Poly(ADP-ribose) polymerase-1 (PARP-1) contributes to the barrier function of a vertebrate chromatin insulator

Journal of Biological Chemistry

Volumn 285, Issue 48, 2010, Pages 37589-37597

  Aker, Mari ^a   Bomsztyk, Karol ^b   Emery, David W ^a,b,c  

^a UNIVERSITY OF WASHINGTON SCHOOL OF MEDICINE   (United States)

^b UNIVERSITY OF WASHINGTON   (United States)

^c UNIVERSITY OF WASHINGTON   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AFFINITY PURIFICATION; BARRIER FUNCTIONS; BINDING ACTIVITIES; BIOCHEMICAL STUDIES; BONE MARROW; CHROMATIN IMMUNOPRECIPITATION; CORE ELEMENTS; CORE REGION; GEL MOBILITY SHIFT ASSAY; IN-CELL; IN-VITRO; IN-VIVO; LENTIVIRAL VECTOR; PARP-INHIBITOR; POLY(ADP-RIBOSE)-POLYMERASE 1 (PARP-1); POSITION EFFECT; PROTEIN BINDING; REPORTER VECTORS; TANDEM MASS SPECTROMETRY;

BINDING ENERGY; BIOCHEMISTRY; BONE; CELL CULTURE; CHROMOSOMES; ELECTROPHORETIC MOBILITY; MASS SPECTROMETRY; PROTEINS;

BINDING SITES;

NICOTINAMIDE ADENINE DINUCLEOTIDE ADENOSINE DIPHOSPHATE RIBOSYLTRANSFERASE 1;

ANIMAL CELL; ARTICLE; BINDING AFFINITY; BONE MARROW CULTURE; CHROMATIN IMMUNOPRECIPITATION; CONTROLLED STUDY; ENZYME ACTIVITY; ENZYME PURIFICATION; GEL MOBILITY SHIFT ASSAY; HUMAN; HUMAN CELL; MOUSE; NONHUMAN; PRIORITY JOURNAL; PROTEIN DNA BINDING; PROTEIN FUNCTION; RETROVIRUS; STRUCTURAL HOMOLOGY; TANDEM MASS SPECTROMETRY;

ANIMALS; BINDING SITES; CELL LINE; CHROMATIN; DNA; GENE SILENCING; HUMANS; INSULATOR ELEMENTS; MICE; MICE, KNOCKOUT; NUCLEIC ACID CONFORMATION; POLY(ADP-RIBOSE) POLYMERASES; PROTEIN BINDING; VERTEBRATES;

MUS; VERTEBRATA;

EID: 78549280576     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M110.174532     Document Type: Article

References (31)

1. West, A. G., Gaszner, M., and Felsenfeld, G. (2002) Genes Dev. 16, 271-288
2. Emery, D. W., Aker, M., and Stamatoyannopoulos, G. (2003) in Gene Transfer and Expression in Mammalian Cells (Makrides, S. C., ed) pp. 381-395, EIC Laboratories Inc., Norwood, MA
3. Gaszner, M., and Felsenfeld, G. (2006) Nat. Rev. Genet. 7, 703-713
4. Wallace, J. A., and Felsenfeld, G. (2007) Curr. Opin. Genet. Dev. 17, 400-407
5. Yusufzai, T. M., and Felsenfeld, G. (2004) Proc. Natl. Acad. Sci. U.S.A. 101, 8620-8624
6. Recillas-Targa, F., Pikaart, M. J., Burgess-Beusse, B., Bell, A. C., Litt, M. D., West, A. G., Gaszner, M., and Felsenfeld, G. (2002) Proc. Natl. Acad. Sci. U.S.A. 99, 6883-6888
7. Chung, J. H., Bell, A. C., and Felsenfeld, G. (1997) Proc. Natl. Acad. Sci. U.S.A. 94, 575-580
8. Bell, A. C., West, A. G., and Felsenfeld, G. (1999) Cell 98, 387-396
9. West, A. G., Huang, S., Gaszner, M., Litt, M. D., and Felsenfeld, G. (2004) Mol. Cell 16, 453-463
10. Huang, S., Li, X., Yusufzai, T. M., Qiu, Y., and Felsenfeld, G. (2007) Mol. Cell. Biol. 27, 7991-8002
11. Gowher, H., Stuhlmann, H., and Felsenfeld, G. (2008) Genes Dev. 22, 2075-2084
12. Aker, M., Tubb, J., Groth, A. C., Bukovsky, A. A., Bell, A. C., Felsenfeld, G., Kiem, H. P., Stamatoyannopoulos, G., and Emery, D. W. (2007) Hum. Gene Ther. 18, 333-343
13. Li, C. L., Xiong, D., Stamatoyannopoulos, G., and Emery, D. W. (2009) Mol. Ther. 17, 716-724
14. Song, C. Z., Keller, K., Chen, Y., and Stamatoyannopoulos, G. (2003) J. Mol. Biol. 329, 207-215
15. Nordhoff, E., Krogsdam, A. M., Jorgensen, H. F., Kallipolitis, B. H., Clark, B. F., Roepstorff, P., and Kristiansen, K. (1999) Nat. Biotechnol. 17, 884-888
16. Emery, D. W., Yannaki, E., Tubb, J., and Stamatoyannopoulos, G. (2000) Proc. Natl. Acad. Sci. U.S.A. 97, 9150-9155
17. Wang, Z. Q., Auer, B., Stingl, L., Berghammer, H., Haidacher, D., Schweiger, M., and Wagner, E. F. (1995) Genes Dev. 9, 509-520
18. Nelson, J. D., Denisenko, O., and Bomsztyk, K. (2006) Nat. Protoc. 1, 179-185
19. Flanagin, S., Nelson, J. D., Castner, D. G., Denisenko, O., and Bomsztyk, K. (2008) Nucleic Acids Res. 36, e17
20. Emery, D. W., Andrews, R. G., and Papayannopoulou, T. (2000) Gene Ther. 7, 359-367
21. Zuker, M. (2003) Nucleic Acids Res. 31, 3406-3415
22. Kaufmann, S. H., Desnoyers, S., Ottaviano, Y., Davidson, N. E., and Poirier, G. G. (1993) Cancer Res. 53, 3976-3985
23. Ouararhni, K., Hadj-Slimane, R., Ait-Si-Ali, S., Robin, P., Mietton, F., Harel-Bellan, A., Dimitrov, S., and Hamiche, A. (2006) Genes Dev. 20, 3324-3336
24. Krishnakumar, R., Gamble, M. J., Frizzell, K. M., Berrocal, J. G., Kininis, M., and Kraus, W. L. (2008) Science 319, 819-821
25. Kim, M. Y., Zhang, T., and Kraus, W. L. (2005) Genes Dev. 19, 1951-1967
26. Kraus, W. L. (2008) Curr. Opin. Cell Biol. 20, 294-302
27. Klenova, E., and Ohlsson, R. (2005) Cell Cycle 4, 96-101
28. Yu, W., Ginjala, V., Pant, V., Chernukhin, I., Whitehead, J., Docquier, F., Farrar, D., Tavoosidana, G., Mukhopadhyay, R., Kanduri, C., Oshimura, M., Feinberg, A. P., Lobanenkov, V., Klenova, E., and Ohlsson, R. (2004) Nat. Genet. 36, 1105-1110
29. Huang, K., Tidyman, W. E., Le, K. U., Kirsten, E., Kun, E., and Ordahl, C. P. (2004) Biochemistry 43, 217-223
30. Lonskaya, I., Potaman, V. N., Shlyakhtenko, L. S., Oussatcheva, E. A., Lyubchenko, Y. L., and Soldatenkov, V. A. (2005) J. Biol. Chem. 280, 17076-17083
31. Potaman, V. N., Shlyakhtenko, L. S., Oussatcheva, E. A., Lyubchenko, Y. L., and Soldatenkov, V. A. (2005) J. Mol. Biol. 348, 609-615