Folding equilibrium constants of telomere G-quadruplexes in free state or associated with proteins determined by isothermal differential hybridization

Analytical Chemistry

Volumn 82, Issue 22, 2010, Pages 9469-9475

  Wang, Quan ^a   Ma, Li ^b   Hao, Yu Hua ^a   Tan, Zheng ^a  

^a INSTITUTE OF ZOOLOGY   (China)

^b WUHAN UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL PROCESS; DUPLEX FORMATION; FREE STATE; G-QUADRUPLEX STRUCTURE; G-QUADRUPLEXES; GENOMIC DNA; HUMAN TELOMERE; MOLECULAR MACHINERY; ORDER OF MAGNITUDE; PHARMACEUTICAL APPLICATIONS; PROTEIN ASSOCIATIONS; PROTEIN BINDING; TECHNICAL SPECIFICATIONS; TELOMERES; THERMAL MELTING;

BIOCHEMISTRY; CHROMOSOMES; EQUILIBRIUM CONSTANTS; MACHINERY; MELTING; NUCLEIC ACIDS; PROTEINS; SODIUM;

DNA SEQUENCES;

DIGOXIN; GUANINE QUADRUPLEX; IMMUNOGLOBULIN F(AB) FRAGMENT; PROTEIN;

ARTICLE; CHEMISTRY; GENETICS; HUMAN; IMMUNOLOGY; METABOLISM; METHODOLOGY; NUCLEIC ACID HYBRIDIZATION; NUCLEOTIDE SEQUENCE; TELOMERE;

BASE SEQUENCE; DIGOXIN; G-QUADRUPLEXES; HUMANS; IMMUNOGLOBULIN FAB FRAGMENTS; NUCLEIC ACID HYBRIDIZATION; PROTEINS; TELOMERE;

EID: 78449267577     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac102168m     Document Type: Article

References (50)

1. Gilbert, D. E. and Feigon, J. Curr. Opin. Struct. Biol. 1999, 9, 305-314
2. Simonsson, T. Biol. Chem. 2001, 382, 621-628
3. Catasti, P., Chen, X., Mariappan, S. V., Bradbury, E. M., and Gupta, G. Genetica 1999, 106, 15-36
4. Huppert, J. L. and Balasubramanian, S. Nucleic Acids Res. 2007, 35, 406-413
5. Du, Z., Zhao, Y., and Li, N. Genome Res. 2008, 18, 233-241
6. Blackburn, E. H. Nature 1991, 350, 569-573
7. Simonsson, T., Pecinka, P., and Kubista, M. Nucleic Acids Res. 1998, 26, 1167-1172
8. Sen, D. and Gilbert, W. Nature 1988, 334, 364-366
9. Hammond-Kosack, M. C., Kilpatrick, M. W., and Docherty, K. J. Mol. Endocrinol. 1993, 10, 121-126
10. Zhang, R., Lin, Y., and Zhang, C. T. Nucleic Acids Res. 2008, 36, D372-376
11. Yadav, V. K., Abraham, J. K., Mani, P., Kulshrestha, R., and Chowdhury, S. Nucleic Acids Res. 2008, 36, D381-385
12. Verma, A., Halder, K., Halder, R., Yadav, V. K., Rawal, P., Thakur, R. K., Mohd, F., Sharma, A., and Chowdhury, S. J. Med. Chem. 2008, 51, 5641-5649
13. Kikin, O., Zappala, Z., D'Antonio, L., and Bagga, P. S. Nucleic Acids Res. 2008, 36, D141-148
14. Hershman, S. G., Chen, Q., Lee, J. Y., Kozak, M. L., Yue, P., Wang, L. S., and Johnson, F. B. Nucleic Acids Res. 2008, 36, 144-156
15. Scaria, V., Hariharan, M., Arora, A., and Maiti, S. Nucleic Acids Res. 2006, 34, W683-685
16. Kostadinov, R., Malhotra, N., Viotti, M., Shine, R., D'Antonio, L., and Bagga, P. Nucleic Acids Res. 2006, 34, D119-124
17. Kikin, O., D'Antonio, L., and Bagga, P. S. Nucleic Acids Res. 2006, 34, W676-682
18. Maizels, N. Nat. Struct. Mol. Biol. 2006, 13, 1055-1059
19. Read, M., Harrison, R. J., Romagnoli, B., Tanious, F. A., Gowan, S. H., Reszka, A. P., Wilson, W. D., Kelland, L. R., and Neidle, S. Proc. Natl. Acad. Sci. U.S.A. 2001, 98, 4844-4849
20. Jing, N., Sha, W., Li, Y., Xiong, W., and Tweardy, D. J. Curr. Pharm. Des. 2005, 11, 2841-2854
21. Shay, J. W. and Keith, W. N. Br. J. Cancer 2008, 98, 677-683
22. Chen, B., Liang, J., Tian, X., and Liu, X. Biochemistry (Moscow) 2008, 73, 853-861
23. Ou, T. M., Lu, Y. J., Tan, J. H., Huang, Z. S., Wong, K. Y., and Gu, L. Q. ChemMedChem 2008, 3, 690-713
24. Zhou, J. L., Lu, Y. J., Ou, T. M., Zhou, J. M., Huang, Z. S., Zhu, X. F., Du, C. J., Bu, X. Z., Ma, L., Gu, L. Q., Li, Y. M., and Chan, A. S. J. Med. Chem. 2005, 48, 7315-7321
25. Neidle, S. and Read, M. A. Biopolymers 2000, 56, 195-208
26. Kerwin, S. M. Curr. Pharm. Des. 2000, 6, 441-478
27. Hurley, L. H., Wheelhouse, R. T., Sun, D., Kerwin, S. M., Salazar, M., Fedoroff, O. Y., Han, F. X., Han, H., Izbicka, E., and Von Hoff, D. D. Pharmacol. Ther. 2000, 85, 141-158
28. Han, H. and Hurley, L. H. Trends Pharmacol. Sci. 2000, 21, 136-142
29. Mergny, J. L. and Helene, C. Nat. Med. 1998, 4, 1366-1367
30. Alberti, P. and Mergny, J. L. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 1569-1573
31. Xu, Y., Hirao, Y., Nishimura, Y., and Sugiyama, H. Bioorg. Med. Chem. 2007, 15, 1275-1279
32. Alberti, P., Bourdoncle, A., Sacca, B., Lacroix, L., and Mergny, J. L. Org. Biomol. Chem. 2006, 4, 3383-3391
33. Mills, M., Mergny, J. L., and Klump, H. H. Arch. Biochem. Biophys. 2008, 474, 8-14
34. Lane, A. N., Chaires, J. B., Gray, R. D., and Trent, J. O. Nucleic Acids Res. 2008, 36, 5482-5515
35. Chaires, J. B. FEBS J. 2010, 277, 1098-1106
36. Rachwal, P. A. and Fox, K. R. Methods 2007, 43, 291-301
37. Ren, J., Qu, X., Trent, J. O., and Chaires, J. B. Nucleic Acids Res. 2002, 30, 2307-2315
38. Antonacci, C., Chaires, J. B., and Sheardy, R. D. Biochemistry 2007, 46, 4654-4660
39. Torimura, M., Kurata, S., Yamada, K., Yokomaku, T., Kamagata, Y., Kanagawa, T., and Kurane, R. Anal. Sci. 2001, 17, 155-160
40. Vaughn, C. P. and Elenitoba-Johnson, K. S. Am. J. Pathol. 2003, 163, 29-35
41. Cavaluzzi, M. J. and Borer, P. N. Nucleic Acids Res. 2004, 32 e13
42. Hardin, C. C., Perry, A. G., and White, K. Biopolymers 2000, 56, 147-194
43. Mergny, J. L., Phan, A. T., and Lacroix, L. FEBS Lett. 1998, 435, 74-78
44. Balagurumoorthy, P. and Brahmachari, S. K. J. Biol. Chem. 1994, 269, 21858-21869
45. Li, W., Wu, P., Ohmichi, T., and Sugimoto, N. FEBS Lett. 2002, 526, 77-81
46. Olsen, C. M., Gmeiner, W. H., and Marky, L. A. J. Phys. Chem. B 2006, 110, 6962-6969
47. Risitano, A. and Fox, K. R. Biochemistry 2003, 42, 6507-6513
48. Zhao, Y., Kan, Z. Y., Zeng, Z. X., Hao, Y. H., Chen, H., and Tan, Z. J. Am. Chem. Soc. 2004, 126, 13255-13264
49. Neidle, S. Curr. Opin. Struct. Biol. 2009, 19, 239-250
50. Liu, H. and Liu, D. Chem. Commun. (Cambridge, U.K.) 2009, 2625-2636