Using NMR metabolomics to investigate tricarboxylic acid cycle-dependent signal transduction in Staphylococcus epidermidis

Journal of Biological Chemistry

Volumn 285, Issue 47, 2010, Pages 36616-36624

  Sadykov, Marat R ^a   Zhang, Bo ^a   Halouska, Steven ^a   Nelson, Jennifer L ^a,b   Kreimer, Lauren W ^a   Zhu, Yefei ^a   Powers, Robert ^a   Somerville, Greg A ^a,c  

^a UNIVERSITY OF NEBRASKA LINCOLN   (United States)

^b Department of Obstetrics Gynecology   (United States)

^c 155 VBS ^*  (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADHESIN; BIOFILM MATRIX; ENVIRONMENTAL CHANGE; ENVIRONMENTAL SIGNALS; EPIDERMIDIS; INTRINSIC PROPERTY; METABOLOMICS; PHENOTYPIC CHANGES; REGULATORY CHANGE; SIGNAL TRANSDUCTION PATHWAYS; STAPHYLOCOCCUS EPIDERMIDIS; TCA CYCLE; TRICARBOXYLIC ACID CYCLE; TRICARBOXYLIC ACIDS;

ACIDS; BACTERIA; BACTERIOLOGY; BACTERIOPHAGES; BIOCHEMISTRY; BIOLOGICAL MATERIALS; BIOSYNTHESIS;

SIGNAL TRANSDUCTION;

ADHESIN; CATABOLITE CONTROL PROTEIN A; POLYSACCHARIDE INTERCELLULAR ADHESIN; TRICARBOXYLIC ACID; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL METABOLISM; CITRIC ACID CYCLE; CONTROLLED STUDY; CULTURE MEDIUM; ENVIRONMENTAL STRESS; METABOLOMICS; NONHUMAN; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PHENOTYPIC VARIATION; PRIORITY JOURNAL; PROTEIN SYNTHESIS; SIGNAL TRANSDUCTION; STAPHYLOCOCCUS EPIDERMIDIS;

BACTERIAL PROTEINS; BLOTTING, NORTHERN; CENTRAL NERVOUS SYSTEM DEPRESSANTS; CITRIC ACID CYCLE; ETHANOL; IRON; MAGNETIC RESONANCE SPECTROSCOPY; METABOLOMICS; RNA, BACTERIAL; SIGNAL TRANSDUCTION; STAPHYLOCOCCUS EPIDERMIDIS;

BACTERIA (MICROORGANISMS); STAPHYLOCOCCUS EPIDERMIDIS;

EID: 78449250298     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M110.152843     Document Type: Article

References (71)

1. von Eiff, C., Peters, G., and Heilmann, C. (2002) Lancet Infect. Dis. 2, 677-685
2. Somerville, G. A., and Proctor, R. A. (2009) Microbiol. Mol. Biol. Rev. 73, 233-248
3. Begun, J., Sifri, C. D., Goldman, S., Calderwood, S. B., and Ausubel, F. M. (2005) Infect. Immun. 73, 872-877
4. Coulter, S. N., Schwan, W. R., Ng, E. Y., Langhorne, M. H., Ritchie, H. D., Westbrock-Wadman, S., Hufnagle, W. O., Folger, K. R., Bayer, A. S., and Stover, C. K. (1998) Mol. Microbiol. 30, 393-404
5. Mei, J. M., Nourbakhsh, F., Ford, C. W., and Holden, D. W. (1997) Mol. Microbiol. 26, 399-407
6. Bae, T., Banger, A. K., Wallace, A., Glass, E. M., Aslund, F., Schneewind, O., and Missiakas, D. M. (2004) Proc. Natl. Acad. Sci. U.S.A. 101, 12312-12317
7. Sadykov, M. R., Olson, M. E., Halouska, S., Zhu, Y., Fey, P. D., Powers, R., and Somerville, G. A. (2008) J. Bacteriol. 190, 7621-7632
8. Somerville, G. A., Chaussee, M. S., Morgan, C. I., Fitzgerald, J. R., Dorward, D. W., Reitzer, L. J., and Musser, J. M. (2002) Infect. Immun. 70, 6373-6382
9. Somerville, G. A., Cockayne, A., Dürr, M., Peschel, A., Otto, M., and Musser, J. M. (2003) J. Bacteriol. 185, 6686-6694
10. Collins, F. M., and Lascelles, J. (1962) J. Gen. Microbiol. 29, 531-535
11. Somerville, G., Mikoryak, C. A., and Reitzer, L. (1999) J. Bacteriol. 181, 1072-1078
12. Varghese, S., Tang, Y., and Imlay, J. A. (2003) J. Bacteriol. 185, 221-230
13. Knobloch, J. K., Bartscht, K., Sabottke, A., Rohde, H., Feucht, H. H., and Mack, D. (2001) J. Bacteriol. 183, 2624-2633
14. Presterl, E., Suchomel, M., Eder, M., Reichmann, S., Lassnigg, A., Graninger, W., and Rotter, M. (2007) J. Antimicrob. Chemother. 60, 417-420
15. Korem, M., Gov, Y., Shirron, N., Shuster, A., and Rosenberg, M. (2007) FEMS Microbiol. Lett. 269, 153-159
16. Lyte, M., Freestone, P. P., Neal, C. P., Olson, B. A., Haigh, R. D., Bayston, R., and Williams, P. H. (2003) Lancet 361, 130-135
17. Otzen, D. E., Sehgal, P., and Nesgaard, L. W. (2007) Biochemistry 46, 4348-4359
18. Mack, D., Siemssen, N., and Laufs, R. (1992) Infect. Immun. 60, 2048-2057
19. Handke, L. D., Slater, S. R., Conlon, K. M., O'Donnell, S. T., Olson, M. E., Bryant, K. A., Rupp, M. E., O'Gara, J. P., and Fey, P. D. (2007) Can. J. Microbiol. 53, 82-91
20. Horton, R. M., Cai, Z. L., Ho, S. N., and Pease, L. R. (1990) BioTechniques 8, 528-535
21. Kennedy, M. C., Emptage, M. H., Dreyer, J. L., and Beinert, H. (1983) J. Biol. Chem. 258, 11098-11105
22. Baughn, A. D., and Malamy, M. H. (2002) Proc. Natl. Acad. Sci. U.S.A. 99, 4662-4667
23. Lowry, O. H., Rosebrough, N. J., Farr, A. L., and Randall, R. J. (1951) J. Biol. Chem. 193, 267-275
24. Vuong, C., Kidder, J. B., Jacobson, E. R., Otto, M., Proctor, R. A., and Somerville, G. A. (2005) J. Bacteriol. 187, 2967-2973
25. Kay, L. E., Keifer, P., and Saarinen, T. (1992) J. Am. Chem. Soc. 114, 10663-10665
26. Palmer, A. G., 3rd, Cavanagh, J., Wright, P. E., and Rance, M. (1991) J. Magn. Reson. 93, 151-170
27. Bax, A., and Davis, D. G. (1985) J. Magn. Reson. 65, 355-360
28. Forgue, P., Halouska, S., Werth, M., Xu, K., Harris, S., and Powers, R. (2006) J. Proteome Res. 5, 1916-1923
29. Halouska, S., Chacon, O., Fenton, R. J., Zinniel, D. K., Barletta, R. G., and Powers, R. (2007) J. Proteome Res. 6, 4608-4614
30. Halouska, S., and Powers, R. (2006) J. Magn. Reson. 178, 88-95
31. Nguyen, B. D., Meng, X., Donovan, K. J., and Shaka, A. J. (2007) J. Magn. Reson. 184, 263-274
32. Craig, A., Cloarec, O., Holmes, E., Nicholson, J. K., and Lindon, J. C. (2006) Anal. Chem. 78, 2262-2267
33. Piotto, M., Saudek, V., and Sklenár, V. (1992) J. Biomol. NMR 2, 661-665
34. Johnson, B. A. (2004) Methods Mol. Biol. 278, 313-352
35. Cui, Q., Lewis, I. A., Hegeman, A. D., Anderson, M. E., Li, J., Schulte, C. F., Westler, W. M., Eghbalnia, H. R., Sussman, M. R., and Markley, J. L. (2008) Nat. Biotechnol. 26, 162-164
36. Ulrich, E. L., Akutsu, H., Doreleijers, J. F., Harano, Y., Ioannidis, Y. E., Lin, J., Livny, M., Mading, S., Maziuk, D., Miller, Z., Nakatani, E., Schulte, C. F., Tolmie, D. E., Kent Wenger, R., Yao, H., and Markley, J. L. (2008) Nucleic Acids Res. 36, D402-D408
37. Wishart, D. S., Tzur, D., Knox, C., Eisner, R., Guo, A. C., Young, N., Cheng, D., Jewell, K., Arndt, D., Sawhney, S., Fung, C., Nikolai, L., Lewis, M., Coutouly, M. A., Forsythe, I., Tang, P., Shrivastava, S., Jeroncic, K., Stothard, P., Amegbey, G., Block, D., Hau, D. D., Wagner, J., Miniaci, J., Clements, M., Gebremedhin, M., Guo, N., Zhang, Y., Duggan, G. E., Macinnis, G. D., Weljie, A. M., Dowlatabadi, R., Bamforth, F., Clive, D., Greiner, R., Li, L., Marrie, T., Sykes, B. D., Vogel, H. J., and Querengesser, L. (2007) Nucleic Acids Res. 35, D521-D526
38. Kanehisa, M., Araki, M., Goto, S., Hattori, M., Hirakawa, M., Itoh, M., Katayama, T., Kawashima, S., Okuda, S., Tokimatsu, T., and Yamanishi, Y. (2008) Nucleic Acids Res. 36, D480-D484
39. Karp, P. D., Ouzounis, C. A., Moore-Kochlacs, C., Goldovsky, L., Kaipa, P., Ahrén, D., Tsoka, S., Darzentas, N., Kunin, V., and López-Bigas, N. (2005) Nucleic Acids Res. 33, 6083-6089
40. Werth, M. T., Halouska, S., Shortridge, M. D., Zhang, B., and Powers, R. (2010) Anal. Biochem. 399, 58-63
41. Efron, B., Halloran, E., and Holmes, S. (1996) Proc. Natl. Acad. Sci. U.S.A. 93, 13429-13434
42. Felsenstein, J. (1985) Evolution 39, 783-791
43. Retief, J. D. (2000) Methods Mol. Biol. 132, 243-258
44. Somerville, G. A., Saïd-Salim, B., Wickman, J. M., Raffel, S. J., Kreiswirth, B. N., and Musser, J. M. (2003) Infect. Immun. 71, 4724-4732
45. Wu, S., de Lencastre, H., and Tomasz, A. (1996) J. Bacteriol. 178, 6036-6042
46. Bischoff, M., Dunman, P., Kormanec, J., Macapagal, D., Murphy, E., Mounts, W., Berger-Bächi, B., and Projan, S. (2004) J. Bacteriol. 186, 4085-4099
47. Bischoff, M., Entenza, J. M., and Giachino, P. (2001) J. Bacteriol. 183, 5171-5179
48. Meier, S., Goerke, C., Wolz, C., Seidl, K., Homerova, D., Schulthess, B., Kormanec, J., Berger-Bächi, B., and Bischoff, M. (2007) Infect. Immun. 75, 4562-4571
49. Pané-Farré, J., Jonas, B., Förstner, K., Engelmann, S., and Hecker, M. (2006) Int. J. Med. Microbiol. 296, 237-258
50. Deutscher, J., and Saier, M. H., Jr. (1983) Proc. Natl. Acad. Sci. U.S.A. 80, 6790-6794
51. Brückner, R., and Titgemeyer, F. (2002) FEMS Microbiol. Lett. 209, 141-148
52. Sonenshein, A. L. (2007) Nat. Rev. Microbiol. 5, 917-927
53. Warner, J. B., and Lolkema, J. S. (2003) Microbiol. Mol. Biol. Rev. 67, 475-490
54. Shivers, R. P., Dineen, S. S., and Sonenshein, A. L. (2006) Mol. Microbiol. 62, 811-822
55. Shivers, R. P., and Sonenshein, A. L. (2004) Mol. Microbiol. 53, 599-611
56. Seidl, K., Goerke, C., Wolz, C., Mack, D., Berger-Bächi, B., and Bischoff, M. (2008) Infect. Immun. 76, 2044-2050
57. Majerczyk, C. D., Sadykov, M. R., Luong, T. T., Lee, C., Somerville, G. A., and Sonenshein, A. L. (2008) J. Bacteriol. 190, 2257-2265
58. Matinaho, S., von Bonsdorff, L., Rouhiainen, A., Lönnroth, M., and Parkkinen, J. (2001) FEMS Microbiol. Lett. 196, 177-182
59. Zhu, Y., Xiong, Y. Q., Sadykov, M. R., Fey, P. D., Lei, M. G., Lee, C. Y., Bayer, A. S., and Somerville, G. A. (2009) Infect. Immun. 77, 4256-4264
60. Bullen, J. J., Rogers, H. J., and Griffiths, E. (1978) Curr. Top. Microbiol. Immunol. 80, 1-35
61. Litwin, C. M., and Calderwood, S. B. (1993) Clin. Microbiol. Rev. 6, 137-149
62. Mekalanos, J. J. (1992) J. Bacteriol. 174, 1-7
63. Park, M. K., Myers, R. A., and Marzella, L. (1992) Clin. Infect. Dis. 14, 720-740
64. Milenbachs, A. A., Brown, D. P., Moors, M., and Youngman, P. (1997) Mol. Microbiol. 23, 1075-1085
65. Vuong, C., Kocianova, S., Voyich, J. M., Yao, Y., Fischer, E. R., DeLeo, F. R., and Otto, M. (2004) J. Biol. Chem. 279, 54881-54886
66. Vuong, C., Voyich, J. M., Fischer, E. R., Braughton, K. R., Whitney, A. R., DeLeo, F. R., and Otto, M. (2004) Cell. Microbiol. 6, 269-275
67. Rupp, M. E., Ulphani, J. S., Fey, P. D., and Mack, D. (1999) Infect. Immun. 67, 2656-2659
68. Rupp, M. E. (1997) in The Staphylococci in Human Disease (Crossley, K. B., and Archer, G. L., eds), pp 379-399, Churchill-Livingstone, New York
69. Deighton, M., and Borland, R. (1993) Infect. Immun. 61, 4473-4479
70. Torres, V. J., Attia, A. S., Mason, W. J., Hood, M. I., Corbin, B. D., Beasley, F. C., Anderson, K. L., Stauff, D. L., McDonald, W. H., Zimmerman, L. J., Friedman, D. B., Heinrichs, D. E., Dunman, P. M., and Skaar, E. P. (2010) Infect. Immun. 78, 1618-1628
71. Goddard, T. D., and Kneller, D. G. Sparky 3, University of California, San Francisco, CA