-
1
-
-
33746263173
-
Transposon technology and vertebrate functional genomics
-
An W, Boeke JD. Transposon technology and vertebrate functional genomics. Genome Biol 2005; 6:361
-
(2005)
Genome Biol
, vol.6
, pp. 361
-
-
An, W.1
Boeke, J.D.2
-
2
-
-
32044467337
-
L1 integration in a transgenic mouse model
-
Babushok DV, Ostertag EM, Courtney CE, Choi JM, Kazazian HH Jr. L1 integration in a transgenic mouse model. Genome Res 2006; 16:1-3.
-
(2006)
Genome Res
, vol.16
, pp. 1-3
-
-
Babushok, D.V.1
Ostertag, E.M.2
Courtney, C.E.3
Choi, J.M.4
Kazazian Jr., H.H.5
-
3
-
-
38449109095
-
Mutagenesis in rodents using the L1 retrotransposon
-
Ostertag EM, Madison BB, Kano H. Mutagenesis in rodents using the L1 retrotransposon. Genome Biol 2007; 8:16.
-
(2007)
Genome Biol
, vol.8
, pp. 16
-
-
Ostertag, E.M.1
Madison, B.B.2
Kano, H.3
-
4
-
-
33845484658
-
Active retrotransposition by a synthetic L1 element in mice
-
An W, Han JS, Wheelan SJ, Davis ES, Coombes CE, Ye P, et al. Active retrotransposition by a synthetic L1 element in mice. Proc Nat Acad Sci USA 2006; 103:18662-7.
-
(2006)
Proc Nat Acad Sci USA
, vol.103
, pp. 18662-18667
-
-
An, W.1
Han, J.S.2
Wheelan, S.J.3
Davis, E.S.4
Coombes, C.E.5
Ye, P.6
-
5
-
-
38449111554
-
Transposons for cancer gene discovery: Sleeping Beauty and beyond
-
Collier LS, Largaespada DA. Transposons for cancer gene discovery: Sleeping Beauty and beyond. Genome Biol 2007; 8:15.
-
(2007)
Genome Biol
, vol.8
, pp. 15
-
-
Collier, L.S.1
Largaespada, D.A.2
-
6
-
-
0036899669
-
A mouse model of human L1 retrotransposition
-
Ostertag EM, DeBerardinis RJ, Goodier JL, Zhang Y, Yang N, Gerton GL, et al. A mouse model of human L1 retrotransposition. Nat Gene 2002; 32: 655-60.
-
(2002)
Nat Gene
, vol.32
, pp. 655-660
-
-
Ostertag, E.M.1
Deberardinis, R.J.2
Goodier, J.L.3
Zhang, Y.4
Yang, N.5
Gerton, G.L.6
-
7
-
-
2442667886
-
Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes
-
Han JS, Szak ST, Boeke JD. Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes. Nature 2004; 429:268-74.
-
(2004)
Nature
, vol.429
, pp. 268-274
-
-
Han, J.S.1
Szak, S.T.2
Boeke, J.D.3
-
8
-
-
0345604433
-
An important role for RUNX3 in human L1 transcription and retrotransposition
-
Yang N, Zhang L, Zhang Y, Kazazian HH, Jr. An important role for RUNX3 in human L1 transcription and retrotransposition. Nucl Acids Res 2003; 31: 4929-40.
-
(2003)
Nucl Acids Res
, vol.31
, pp. 4929-4940
-
-
Yang, N.1
Zhang, L.2
Zhang, Y.3
Kazazian Jr., H.H.4
-
9
-
-
2442671716
-
A highly active synthetic mammalian retrotransposon
-
Han JS, Boeke JD. A highly active synthetic mammalian retrotransposon. Nature 2004; 429:314-8.
-
(2004)
Nature
, vol.429
, pp. 314-318
-
-
Han, J.S.1
Boeke, J.D.2
-
10
-
-
0036077271
-
Evidence consistent with human L1 retrotransposition in maternal meiosis I
-
Brouha B, Meischl C, Ostertag E, de Boer M, Zhang Y, Neijens H, et al. Evidence consistent with human L1 retrotransposition in maternal meiosis I. Am J Hum Genet 2002; 71:327-36.
-
(2002)
Am J Hum Genet
, vol.71
, pp. 327-336
-
-
Brouha, B.1
Meischl, C.2
Ostertag, E.3
de Boer, M.4
Zhang, Y.5
Neijens, H.6
-
11
-
-
50849133226
-
Conditional activation of a single-copy L1 transgene in mice by Cre
-
An W, Han JS, Schrum CM, Maitra A, Koentgen F, Boeke JD. Conditional activation of a single-copy L1 transgene in mice by Cre. Genesis 2008; 46:373-83.
-
(2008)
Genesis
, vol.46
, pp. 373-383
-
-
An, W.1
Han, J.S.2
Schrum, C.M.3
Maitra, A.4
Koentgen, F.5
Boeke, J.D.6
-
12
-
-
33744466012
-
L1 retrotransposition in non-dividing and primary human somatic cells
-
Kubo S, Seleme MC, Soifer HS, Perez JL, Moran JV, Kazazian HH Jr, et al. L1 retrotransposition in non-dividing and primary human somatic cells. Proc Nat Acad Sci USA 2006; 103:8036-41.
-
(2006)
Proc Nat Acad Sci USA
, vol.103
, pp. 8036-8041
-
-
Kubo, S.1
Seleme, M.C.2
Soifer, H.S.3
Perez, J.L.4
Moran, J.V.5
Kazazian Jr., H.H.6
-
13
-
-
20544466648
-
Somatic mosaicism in neuronal precursor cells mediated by L1 retrotransposition
-
Muotri AR, Chu VT, Marchetto MC, Deng W, Moran JV, Gage FH. Somatic mosaicism in neuronal precursor cells mediated by L1 retrotransposition. Nature 2005; 435:903-10.
-
(2005)
Nature
, vol.435
, pp. 903-910
-
-
Muotri, A.R.1
Chu, V.T.2
Marchetto, M.C.3
Deng, W.4
Moran, J.V.5
Gage, F.H.6
-
14
-
-
66149168927
-
L1 retrotransposition occurs mainly in embryogenesis and creates somatic mosaicism
-
Kano H, Godoy I, Courtney C, Vetter MR, Gerton GL, Ostertag EM, et al. L1 retrotransposition occurs mainly in embryogenesis and creates somatic mosaicism. Genes Dev 2009; 23:1303-12.
-
(2009)
Genes Dev
, vol.23
, pp. 1303-1312
-
-
Kano, H.1
Godoy, I.2
Courtney, C.3
Vetter, M.R.4
Gerton, G.L.5
Ostertag, E.M.6
-
17
-
-
46149113196
-
L1 mobile element expression causes multiple types of toxicity
-
Wallace NA, Belancio VP, Deininger PL. L1 mobile element expression causes multiple types of toxicity. Gene 2008; 419:75-81.
-
(2008)
Gene
, vol.419
, pp. 75-81
-
-
Wallace, N.A.1
Belancio, V.P.2
Deininger, P.L.3
-
18
-
-
34548348766
-
Genome-wide prediction of matrix attachment regions that increase gene expression in mammalian cells
-
Girod PA, Nguyen DQ, Calabrese D, Puttini S, Grandjean M, Martinet D, et al. Genome-wide prediction of matrix attachment regions that increase gene expression in mammalian cells. Nat Methods 2007; 4:747-53.
-
(2007)
Nat Methods
, vol.4
, pp. 747-753
-
-
Girod, P.A.1
Nguyen, D.Q.2
Calabrese, D.3
Puttini, S.4
Grandjean, M.5
Martinet, D.6
-
19
-
-
48249096827
-
Episomal vectors for gene therapy
-
Ehrhardt A, Haase R, Schepers A, Deutsch MJ, Lipps HJ, Baiker A. Episomal vectors for gene therapy. Curr Gene Ther 2008; 8:147-61.
-
(2008)
Curr Gene Ther
, vol.8
, pp. 147-161
-
-
Ehrhardt, A.1
Haase, R.2
Schepers, A.3
Deutsch, M.J.4
Lipps, H.J.5
Baiker, A.6
-
20
-
-
59249084751
-
Sustained transgene expression using MAR elements
-
Harraghy N, Gaussin A, Mermod N. Sustained transgene expression using MAR elements. Curr Gene Ther 2008; 8:353-66.
-
(2008)
Curr Gene Ther
, vol.8
, pp. 353-366
-
-
Harraghy, N.1
Gaussin, A.2
Mermod, N.3
-
21
-
-
57049172006
-
Persistent episomal transgene expression in liver following delivery of a scaffold/ matrix attachment region containing non-viral vector
-
Argyros O, Wong SP, Niceta M, Waddington SN, Howe SJ, Coutelle C, et al. Persistent episomal transgene expression in liver following delivery of a scaffold/ matrix attachment region containing non-viral vector. Gene Ther 2008; 15:1593-605.
-
(2008)
Gene Ther
, vol.15
, pp. 1593-1605
-
-
Argyros, O.1
Wong, S.P.2
Niceta, M.3
Waddington, S.N.4
Howe, S.J.5
Coutelle, C.6
-
22
-
-
34548382578
-
Establishment and mitotic stability of an extra-chromosomal mammalian replicon
-
Stehle IM, Postberg J, Rupprecht S, Cremer T, Jackson DA, Lipps HJ. Establishment and mitotic stability of an extra-chromosomal mammalian replicon. BMC Cell Biol 2007; 8:33.
-
(2007)
BMC Cell Biol
, vol.8
, pp. 33
-
-
Stehle, I.M.1
Postberg, J.2
Rupprecht, S.3
Cremer, T.4
Jackson, D.A.5
Lipps, H.J.6
-
23
-
-
0034653773
-
Determination of L1 retrotransposition kinetics in cultured cells
-
Ostertag EM, Prak ET, DeBerardinis RJ, Moran JV, Kazazian HH Jr. Determination of L1 retrotransposition kinetics in cultured cells. Nucl Acids Res 2000; 28:1418-23.
-
(2000)
Nucl Acids Res
, vol.28
, pp. 1418-1423
-
-
Ostertag, E.M.1
Prak, E.T.2
Deberardinis, R.J.3
Moran, J.V.4
Kazazian Jr., H.H.5
-
24
-
-
33746368052
-
SV40 large T antigen upregulates the retrotransposition frequency of viral-like 30 elements
-
Noutsopoulos D, Vartholomatos G, Kolaitis N, Tzavaras T. SV40 large T antigen upregulates the retrotransposition frequency of viral-like 30 elements. J Mol Biol 2006; 361:450-61.
-
(2006)
J Mol Biol
, vol.361
, pp. 450-461
-
-
Noutsopoulos, D.1
Vartholomatos, G.2
Kolaitis, N.3
Tzavaras, T.4
-
25
-
-
3843139313
-
Nuclear scaffold/matrix attached region modules linked to a transcription unit are sufficient for replication and maintenance of a mammalian episome
-
Jenke AC, Stehle IM, Herrmann F, Eisenberger T, Baiker A, Bode J, et al. Nuclear scaffold/matrix attached region modules linked to a transcription unit are sufficient for replication and maintenance of a mammalian episome. Proc Nat Acad Sci USA 2004; 101:11322-7.
-
(2004)
Proc Nat Acad Sci USA
, vol.101
, pp. 11322-11327
-
-
Jenke, A.C.1
Stehle, I.M.2
Herrmann, F.3
Eisenberger, T.4
Baiker, A.5
Bode, J.6
-
26
-
-
0030473770
-
Engineering a miniherpesvirus as a general strategy to transduce up to 180 kb of functional self-replicating human minichromosomes
-
Sun TQ, Livanos E, Vos JM. Engineering a miniherpesvirus as a general strategy to transduce up to 180 kb of functional self-replicating human minichromosomes. Gene Ther 1996; 3:1081-8.
-
(1996)
Gene Ther
, vol.3
, pp. 1081-1088
-
-
Sun, T.Q.1
Livanos, E.2
Vos, J.M.3
-
27
-
-
0033780721
-
Mitotic stability of an episomal vector containing a human scaffold/matrix-attached region is provided by association with nuclear matrix
-
Baiker A, Maercker C, Piechaczek C, Schmidt SB, Bode J, Benham C, et al. Mitotic stability of an episomal vector containing a human scaffold/matrix-attached region is provided by association with nuclear matrix. Nat Cell Biol 2000; 2:182-4.
-
(2000)
Nat Cell Biol
, vol.2
, pp. 182-184
-
-
Baiker, A.1
Maercker, C.2
Piechaczek, C.3
Schmidt, S.B.4
Bode, J.5
Benham, C.6
-
28
-
-
34948866264
-
The coupling of synthesis and partitioning of EBV's plasmid replicon is revealed in live cells
-
Nanbo A, Sugden A, Sugden B. The coupling of synthesis and partitioning of EBV's plasmid replicon is revealed in live cells. EMBO J 2007; 26:4252-62.
-
(2007)
EMBO J
, vol.26
, pp. 4252-4262
-
-
Nanbo, A.1
Sugden, A.2
Sugden, B.3
-
29
-
-
0034162764
-
Expression of the human CFTR gene from episomal oriP-EBNA1-YACs in mouse cells
-
Huertas D, Howe S, McGuigan A, Huxley C. Expression of the human CFTR gene from episomal oriP-EBNA1-YACs in mouse cells. Hum Mol Genet 2000; 9:617-29.
-
(2000)
Hum Mol Genet
, vol.9
, pp. 617-629
-
-
Huertas, D.1
Howe, S.2
McGuigan, A.3
Huxley, C.4
-
30
-
-
0030940594
-
Identification of critical CpG sites for repression of L1 transcription by DNA methylation
-
Hata K, Sakaki Y. Identification of critical CpG sites for repression of L1 transcription by DNA methylation. Gene 1997; 189:227-34.
-
(1997)
Gene
, vol.189
, pp. 227-234
-
-
Hata, K.1
Sakaki, Y.2
-
31
-
-
17644398266
-
Hemimethylation and non-CpG methylation levels in a promoter region of human LINE-1 (L1) repeated elements
-
Burden AF, Manley NC, Clark AD, Gartler SM, Laird CD, Hansen RS. Hemimethylation and non-CpG methylation levels in a promoter region of human LINE-1 (L1) repeated elements. J Biol Chem 2005; 280:14413-9.
-
(2005)
J Biol Chem
, vol.280
, pp. 14413-14419
-
-
Burden, A.F.1
Manley, N.C.2
Clark, A.D.3
Gartler, S.M.4
Laird, C.D.5
Hansen, R.S.6
-
32
-
-
45349086923
-
Global mapping of DNA methylation in mouse promoters reveals epigenetic reprogramming of pluripotency genes
-
Farthing CR, Ficz G, Ng RK, Chan CF, Andrews S, Dean W, et al. Global mapping of DNA methylation in mouse promoters reveals epigenetic reprogramming of pluripotency genes. PLoS Gene 2008; 4:1000116.
-
(2008)
PLoS Gene
, vol.4
, pp. 1000116
-
-
Farthing, C.R.1
Ficz, G.2
Ng, R.K.3
Chan, C.F.4
Andrews, S.5
Dean, W.6
-
33
-
-
33847198958
-
Sleeping beauty transposase has an affinity for heterochromatin conformation
-
Ikeda R, Kokubu C, Yusa K, Keng VW, Horie K, Takeda J. Sleeping beauty transposase has an affinity for heterochromatin conformation. Mol Cell Biol 2007; 27:1665-76.
-
(2007)
Mol Cell Biol
, vol.27
, pp. 1665-1676
-
-
Ikeda, R.1
Kokubu, C.2
Yusa, K.3
Keng, V.W.4
Horie, K.5
Takeda, J.6
-
34
-
-
61349143203
-
Prognostic implications of and relationship between CpG island hypermethylation and repetitive DNA hypomethylation in hepatocellular carcinoma
-
Lee HS, Kim BH, Cho NY, Yoo EJ, Choi M, Shin SH, et al. Prognostic implications of and relationship between CpG island hypermethylation and repetitive DNA hypomethylation in hepatocellular carcinoma. Clin Cancer Res 2009; 15:812-20.
-
(2009)
Clin Cancer Res
, vol.15
, pp. 812-820
-
-
Lee, H.S.1
Kim, B.H.2
Cho, N.Y.3
Yoo, E.J.4
Choi, M.5
Shin, S.H.6
-
35
-
-
27744577751
-
BiQ Analyzer: Visualization and Quality Control For DNA Methylation Data From Bisulfite Sequencing
-
Bock C, Reither S, Mikeska T, Paulsen M, Walter J, Lengauer T. BiQ Analyzer: visualization and quality control for DNA methylation data from bisulfite sequencing. Bioinformatics (Oxford, England) 2005; 21:4067-8.
-
(2005)
Bioinformatics (Oxford, England)
, vol.21
, pp. 4067-4068
-
-
Bock, C.1
Reither, S.2
Mikeska, T.3
Paulsen, M.4
Walter, J.5
Lengauer, T.6
-
36
-
-
66249100555
-
Transposon-mediated genome manipulation in vertebrates
-
Ivics Z, Li MA, Mates L, Boeke JD, Nagy A, Bradley A, et al. Transposon-mediated genome manipulation in vertebrates. Nat Methods 2009; 6:415-22.
-
(2009)
Nat Methods
, vol.6
, pp. 415-422
-
-
Ivics, Z.1
Li, M.A.2
Mates, L.3
Boeke, J.D.4
Nagy, A.5
Bradley, A.6
-
37
-
-
70349774458
-
The L1 retrotransposition assay: A retrospective and toolkit
-
Rangwala SH, Kazazian HH Jr. The L1 retrotransposition assay: A retrospective and toolkit. Methods 2009; 49:219-26.
-
(2009)
Methods
, vol.49
, pp. 219-226
-
-
Rangwala, S.H.1
Kazazian Jr., H.H.2
-
38
-
-
29244487057
-
Gene transfer into human hematopoietic progenitor cells with an episomal vector carrying an S/MAR element
-
Papapetrou EP, Ziros PG, Micheva ID, Zoumbos NC, Athanassiadou A. Gene transfer into human hematopoietic progenitor cells with an episomal vector carrying an S/MAR element. Gene Ther 2006; 13:40-51.
-
(2006)
Gene Ther
, vol.13
, pp. 40-51
-
-
Papapetrou, E.P.1
Ziros, P.G.2
Micheva, I.D.3
Zoumbos, N.C.4
Athanassiadou, A.5
-
39
-
-
0842307053
-
An episomal mammalian replicon: Sequence-independent binding of the origin recognition complex
-
Schaarschmidt D, Baltin J, Stehle IM, Lipps HJ, Knippers R. An episomal mammalian replicon: sequence-independent binding of the origin recognition complex. EMBO J 2004; 23:191-201.
-
(2004)
EMBO J
, vol.23
, pp. 191-201
-
-
Schaarschmidt, D.1
Baltin, J.2
Stehle, I.M.3
Lipps, H.J.4
Knippers, R.5
-
40
-
-
14544277626
-
Origin recognition and the chromosome cycle
-
Stillman B. Origin recognition and the chromosome cycle. FEBS Lett 2005; 579:877-84.
-
(2005)
FEBS Lett
, vol.579
, pp. 877-884
-
-
Stillman, B.1
-
41
-
-
0036705432
-
Extrachromosomal plasmid vectors for gene therapy
-
Stoll SM, Calos MP. Extrachromosomal plasmid vectors for gene therapy. Curr Opin Mol Ther 2002; 4:299-305.
-
(2002)
Curr Opin Mol Ther
, vol.4
, pp. 299-305
-
-
Stoll, S.M.1
Calos, M.P.2
-
42
-
-
33749260340
-
Designing nonviral vectors for efficient gene transfer and long-term gene expression
-
Jackson DA, Juranek S, Lipps HJ. Designing nonviral vectors for efficient gene transfer and long-term gene expression. Mol Ther 2006; 14:613-26.
-
(2006)
Mol Ther
, vol.14
, pp. 613-626
-
-
Jackson, D.A.1
Juranek, S.2
Lipps, H.J.3
-
43
-
-
0034637528
-
A distinct sequence (ATA AA)n separates methylated and unmethylated domains at the 5'-end of the GSTP1 CpG island
-
Millar DS, Paul CL, Molloy PL, Clark SJ. A distinct sequence (ATA AA)n separates methylated and unmethylated domains at the 5'-end of the GSTP1 CpG island. J Biol Chem 2000; 275:24893-9.
-
(2000)
J Biol Chem
, vol.275
, pp. 24893-24899
-
-
Millar, D.S.1
Paul, C.L.2
Molloy, P.L.3
Clark, S.J.4
-
44
-
-
69849108458
-
Control of chicken CR1 retrotransposons is independent of Dicer-mediated RNA interference pathway
-
Lee SH, Eldi P, Cho SY, Rangasamy D. Control of chicken CR1 retrotransposons is independent of Dicer-mediated RNA interference pathway. BMC Biol 2009; 7:53.
-
(2009)
BMC Biol
, vol.7
, pp. 53
-
-
Lee, S.H.1
Eldi, P.2
Cho, S.Y.3
Rangasamy, D.4
-
45
-
-
33746745365
-
Absolute and relative QPCR quantification of plasmid copy number in Escherichia coli
-
Lee C, Kim J, Shin SG, Hwang S. Absolute and relative QPCR quantification of plasmid copy number in Escherichia coli. J Biotechnol 2006; 123:273-80.
-
(2006)
J Biotechnol
, vol.123
, pp. 273-280
-
-
Lee, C.1
Kim, J.2
Shin, S.G.3
Hwang, S.4
|