AFLP analysis of genetic diversity within and among Coffea arabica cultivars

Theoretical and Applied Genetics

Volumn 105, Issue 2-3, 2002, Pages 209-215

  Steiger, D L ^a   Nagai, C ^a   Moore, P H ^b   Morden, C W ^c   Osgood, R V ^a   Ming, R ^a  

^a HAWAII AGRICULTURE RESEARCH CENTER   (United States)

^b AGRICULTURAL RESEARCH SERVICE   (United States)

^c UNIVERSITY OF HAWAII   (United States)

Author keywords

AFLP; Coffea arabica; Genetic diversity; Molecular phylogeny

Indexed keywords

BIOMARKERS; CULTIVATION; DNA; PLANTS (BOTANY);

GENETIC DIVERSITY;

GENETIC ENGINEERING;

COFFEA; COFFEA ARABICA; COFFEA CANEPHORA; COFFEA LIBERICA; EMBRYOPHYTA;

EID: 0036942349     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-002-0939-8     Document Type: Article

References (30)

1. Anthony F, Bertrand B, Quiros O, Wilches A, Lashermes P, Berthaud J, Charrier A (2001) Genetic diversity of wild accessions of coffee (Coffea arabica L.) using molecular markers. Euphytica 87:59-64
2. Berthaud J, Charrier A (1988) Genetic resources of Coffea. In: Clark RJ, Macrae R (eds) Coffee Vol 4: Agronomy. Elsevier, London, pp 1-42
3. Berthou F, Trouslot P (1979) Analysis of enzymatic polymorphism in the genus Coffea: Adaptation of an electrophoresis method in series: First results. In: VIIIth Colloque Scientifique International sur le Cafe. Abidjan, pp 373-383
4. Berthou F, Mathieu C, Vedel F (1983) Chloroplast and mitochondrial DNA variation as an indicator of phylogenetic relationships in the genus Coffea L. Theor Appl Genet 65:77-84
5. Bisco J, Logan WJC (1987) Types and varieties of coffee. In: Bisco J, Logan WJC (eds) Coffee Handbook. Cannon Press, Harare, Zimbabwe
6. Breyne P, Rombaut D, Van Gysel A, Van Montagu M, Gerats T (1999) AFLP analysis of genetic diversity within and between Arabidopsis thaliana ecotypes. Mol Gen Genet 261:627-634
7. Carvalho A (1939) Causas de baixa productividade do coffee arabica L. var maragogipe Hort. Ex Froehner. Bol Tech Inst Agron Compinas 59:1-45
8. Carvalho A, Tango JS, Monaco LC (1965) Genetic control of the caffeine content of coffee. Nature 205:314
9. Chittenden LM, Schertz KF, Lin YR, Wing RA, Paterson AH (1994) A detailed RFLP map of Sorghum bicolor xS. propinquum, suitable for high-density mapping, suggests ancestral duplication of Sorghum chromosomes or chromosomal segments. Theor Appl Genet 87:925-933
10. Ellis RP, McNicol JW, Baird E, Booth A, Lawrence P, Thomas B, Powell W (1997) The use of AFLPs to examine genetic relatedness in barley. Mol Breed 3:359-369
11. Erschadi S, Haberer G, Schoniger M, Torres-Ruiz RA (2000) Estimating genetic diversity of Arabidopsis thaliana ecotypes with amplified fragment length polymorphism (AFLP). Theor Appl Genet 100:633-640
12. Ferwerda FP (1976) Coffee. In: Simmonds NW (ed) Evolution of Crop Plants. Longman, London, pp 257-260
13. Hansen M, Kraft T, Christiansson M, Nilsson N-O (1999) Evaluation of AFLP in Beta. Theor Appl Genet 98:845-852
14. Krug CA (1949) Mutação em coffee arabica L. Bragantia 9:1-10
15. Krug CA, Carvalho A (1951) The genetics of coffee. Adv Genet 4:127-158
16. Krug CA, Mendes JET, Carvalho A (1949) Taxonomia de Coffee arabica L. II. Coffee arabica L. var. catyrra e sua forma xanthocarpa. Bragantia 9:157-163
17. Lashermes P, Trouslot P, Anthony F, Combes MC, Charrier A (1996) Genetic diversity of RAPD markers between cultivated and wild accessions of Coffea arabica. Euphytica 87:59-64
18. Lashermes P, Agwanda CO, Anthony F, Combes MC, Trouslot P, Charrier A (1997a) Molecular marker-assisted selection: A powerful approach for coffee improvement. In: 17th Int Sci Colloq on Coffee. ASIC, Paris, pp 474-480
19. Lashermes P, Combes MC, Trouslot P, Charrier A (1997b) Phylogenetic relationships of coffee-tree species (Coffea L.) as inferred from ITS sequences of nuclear ribosomal DNA. Theor Appl Genet 94:947-955
20. Lashermes P, Combes MC, Robert J, Trouslot P, D'Hont A, Anthony F, Charrier A (1999) Molecular charaterization and origin of the Coffea arabica L. genome. Mol Gen Genet 261:259-266
21. Maughan PJ, Saghai Maroof MA, Buss GR, Huestis GM (1996) Amplified fragment length polymorphism (AFLP) in soybean: Species diversity, inheritance, and near-isogenic line analysis. Theor Appl Genet 93:392-401
22. Nagai C, Sun WG, Bittenbender HC, Meinzer FC, Cavaletto C, Jackson M, Ming R, Osgood RV (2001) Coffee breeding and selection in Hawaii. Proc 19th ASIC Int Conf on Coffee Science. Trieste, Italy
23. Orozco-castillo C, Chalmers KJ, Waugh R, Powell W (1994) Detection of genetic diversity and selective gene introgression in coffee using RAPD markers. Theor Appl Genet 87:934-940
24. Orozco-castillo C, Chalmers KJ, Powell W, Waugh R (1996) RAPD and organelle specific PCR re-affirms taxonomic relationships within the genus Coffea. Theor Appl Genet 87:934-940
25. Pejic I, Ajmone-Marsan P, Morgante M, Kozumplick V, Castiglioni P, Taramino G, Motto M (1998) Comparative analysis of genetic similarity among maize inbred lines detected by RFLPs, RAPDs, SSRs and AFLPs. Theor Appl Genet 97:1248-1255
26. Powell W, Morgante M, Andre C, Hanafey M, Vogel J, Tingey S, Rafalski A (1996) The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis. Mol Breed 2:225-238
27. Russell JR, Fuller JD, Macaulay M, Hatz BG, Jahoor A, Powell W, Waugh R (1997) Direct comparison of levels of genetic variation among barley accessions detected by RFLPs, AFLPs, SSRs and RAPDs. Theor Appl Genet 95:714-722
28. Sneath PHA, Sokal RR (1973) Numerical Taxonomy. Freeman, San Francisco, USA
29. Sokal RR, Michener CD (1958) A statistical method for evaluating systematic relationships. Univ Kansas Sci Bull 38:1409-38
30. Vos P, Hogers R, Bleeker M, Reijans M, van de Lee T, Hornes M, Frijters A, Pot J, Peleman J, Kuiper M, Zabeau M (1995) AFLP: A new technique for DNA fingerprinting. Nucleic Acids Res 23:4407-4414