-
1
-
-
0025651901
-
A rapid method for determining clone frequency in complex populations using PCR and the Poisson distribution
-
1:CAS:528:DyaK3MXns1eisQ%3D%3D 10.1093/nar/18.24.7453 2259641
-
D. C. Alexander 1990 A rapid method for determining clone frequency in complex populations using PCR and the Poisson distribution Nucl Acids Res 18 24 7453 7454 1:CAS:528:DyaK3MXns1eisQ%3D%3D 10.1093/nar/18.24.7453 2259641
-
(1990)
Nucl Acids Res
, vol.18
, Issue.24
, pp. 7453-7454
-
-
Alexander, D.C.1
-
2
-
-
0034043998
-
+ T cell counts despite virologic failure of protease inhibitor-containing antiretroviral combination therapy
-
DOI 10.1086/315429
-
+ T cell counts despite virologic failure of protease inhibitor-containing antiretroviral combination therapy J Infect Dis 181 5 1808 1812 10.1086/315429 10823790 (Pubitemid 30387783)
-
(2000)
Journal of Infectious Diseases
, vol.181
, Issue.5
, pp. 1808-1812
-
-
Belec, L.1
Piketty, C.2
Si-Mohamed, A.3
Goujon, C.4
Hallouin, M.-C.5
Cotigny, S.6
Weiss, L.7
Kazatchkine, M.D.8
-
3
-
-
0029131607
-
Three-dimensional structure of a mutant HIV-1 protease displaying cross-resistance to all protease inhibitors in clinical trials
-
1:CAS:528:DyaK2MXotFajtLg%3D 10.1074/jbc.270.37.21942 7665551
-
Z. Chen Y. Li H. B. Schock, et al. 1995 Three-dimensional structure of a mutant HIV-1 protease displaying cross-resistance to all protease inhibitors in clinical trials J Biol Chem 270 37 21433 21436 1:CAS:528:DyaK2MXotFajtLg%3D 10.1074/jbc.270.37.21942 7665551
-
(1995)
J Biol Chem
, vol.270
, Issue.37
, pp. 21433-21436
-
-
Chen, Z.1
Li, Y.2
Schock, H.B.3
-
4
-
-
1442355578
-
HIV drug resistance
-
1:CAS:528:DC%2BD2cXhvFGjs7c%3D 14999114
-
F. Clavel A. J. Hance 2004 HIV drug resistance N Engl J Med 350 10 1023 1035 1:CAS:528:DC%2BD2cXhvFGjs7c%3D 14999114
-
(2004)
N Engl J Med
, vol.350
, Issue.10
, pp. 1023-1035
-
-
Clavel, F.1
Hance, A.J.2
-
5
-
-
0028952146
-
HIV population dynamics in vivo: Implications for genetic variation, pathogenesis, and therapy
-
1:CAS:528:DyaK2MXjsFShu7w%3D 10.1126/science.7824947 7824947
-
J. M. Coffin 1995 HIV population dynamics in vivo: implications for genetic variation, pathogenesis, and therapy Science 267 483 489 1:CAS:528:DyaK2MXjsFShu7w%3D 10.1126/science.7824947 7824947
-
(1995)
Science
, vol.267
, pp. 483-489
-
-
Coffin, J.M.1
-
6
-
-
10344263394
-
Genetic correlates of in vivo viral resistance to Indinavir, a Human Immunodeficiency Virus type 1 protease inhibitor
-
1:CAS:528:DyaK28XmvVGnurc%3D 8970946
-
J. H. Condra D. J. Holder W. A. Schleif, et al. 1996 Genetic correlates of in vivo viral resistance to Indinavir, a Human Immunodeficiency Virus type 1 protease inhibitor J Virol 70 12 8270 8276 1:CAS:528:DyaK28XmvVGnurc%3D 8970946
-
(1996)
J Virol
, vol.70
, Issue.12
, pp. 8270-8276
-
-
Condra, J.H.1
Holder, D.J.2
Schleif, W.A.3
-
7
-
-
21144449047
-
Genotypic resistance analyses in nucleoside-pretreated patients failing an indinavir containing regimen: Results from a randomized comparative trial: (Novavir ANRS 073)
-
DOI 10.1016/j.jcv.2004.05.019, PII S1386653204002884
-
D. Descamps V. Joly P. Flandre, et al. 2005 Genotypic resistance analyses in nucleoside-pretreated patients failing an indinavir containing regimen: results from a randomized comparative trial: (Novavir ANRS 073) J Clin Virol 33 99 103 1:CAS:528:DC%2BD2MXks1aqsbs%3D 10.1016/j.jcv.2004.05.019 15911424 (Pubitemid 40725302)
-
(2005)
Journal of Clinical Virology
, vol.33
, Issue.2
, pp. 99-103
-
-
Descamps, D.1
Joly, V.2
Flandre, P.3
Peytavin, G.4
Meiffredy, V.5
Delarue, S.6
Lastere, S.7
Aboulker, J.-P.8
Yeni, P.9
Brun-Vezinet, F.10
-
8
-
-
0037369101
-
Genetic characterization of rebounding human immunodeficiency virus type 1 in plasma during multiple interruptions of highly active antiretroviral therapy
-
DOI 10.1128/JVI.77.5.3229-3237.2003
-
M. Dybul M. Daucher M. A. Jensen, et al. 2003 Genetic characterization of rebounding Human Immunodeficiency Virus type 1 in plasma during multiple interruptions of highly active antiretroviral therapy J Virol 77 5 3229 3237 1:CAS:528:DC%2BD3sXhsVOhu7g%3D 10.1128/JVI.77.5.3229-3237.2003 12584346 (Pubitemid 36228106)
-
(2003)
Journal of Virology
, vol.77
, Issue.5
, pp. 3229-3237
-
-
Dybul, M.1
Daucher, M.2
Jensen, M.A.3
Hallahan, C.W.4
Chun, T.-W.5
Belson, M.6
Hidalgo, B.7
Nickle, D.C.8
Yoder, C.9
Metcalf, J.A.10
Davey, R.T.11
Ehler, L.12
Kress-Rock, D.13
Nies-Kraske, E.14
Liu, S.15
Mullins, J.I.16
Fauci, A.S.17
-
9
-
-
0032503931
-
Comparative performance of high-density oligonucleotide sequencing and dideoxynucleotide sequencing of HIV type 1 pol from clinical samples
-
1:CAS:528:DyaK1cXksV2qtbk%3D 10.1089/aid.1998.14.869 9671215
-
H. F. Gunthard J. K. Wong C. C. Ignacio, et al. 1998 Comparative performance of high-density oligonucleotide sequencing and dideoxynucleotide sequencing of HIV type 1 pol from clinical samples AIDS Res Hum Retroviruses 14 869 876 1:CAS:528:DyaK1cXksV2qtbk%3D 10.1089/aid.1998.14.869 9671215
-
(1998)
AIDS Res Hum Retroviruses
, vol.14
, pp. 869-876
-
-
Gunthard, H.F.1
Wong, J.K.2
Ignacio, C.C.3
-
10
-
-
0028286025
-
Selection of multiple human immunodeficiency virus type 1 variants that encode viral proteases with decreased sensitivity to an inhibitor of the viral protease
-
DOI 10.1073/pnas.91.12.5597
-
A. H. Kaplan S. F. Michael R. S. Wehbie, et al. 1994 Selection of multiple Human Immunodeficiency Virus type 1 variants that encode viral proteases with decreased sensitivity to an inhibitor of the viral protease Proc. Natd. Acad. Sci 91 5597 5601 1:CAS:528:DyaK2cXlsVygu7s%3D 10.1073/pnas.91.12. 5597 (Pubitemid 24174375)
-
(1994)
Proceedings of the National Academy of Sciences of the United States of America
, vol.91
, Issue.12
, pp. 5597-5601
-
-
Kaplan, A.H.1
Michael, S.F.2
Wehbie, R.S.3
Knigge, M.F.4
Paul, D.A.5
Everitt, L.6
Kempf, D.J.7
Norbeck, D.W.8
Erickson, J.W.9
Swanstrom, R.10
-
11
-
-
34347354194
-
Prediction of the efficacy of antiviral therapy for hepatitis C virus infection by an ultrasensitive RT-PCR assay
-
DOI 10.1002/jmv.20908
-
E. Kinai H. Hanabusa S. Kato 2007 Prediction of the efficacy of antiviral therapy for Hepatitis C Virus infection by an ultrasensitive RT-PCR assay J Med Virol 79 1113 1119 1:CAS:528:DC%2BD2sXotl2ktb0%3D 10.1002/jmv.20908 17596840 (Pubitemid 47015410)
-
(2007)
Journal of Medical Virology
, vol.79
, Issue.8
, pp. 1113-1119
-
-
Kinai, E.1
Hanabusa, H.2
Kato, S.3
-
12
-
-
63449119880
-
Quantitation of HIV-1 group M proviral DNA using TaqMan MGB real-time PCR
-
1:CAS:528:DC%2BD1MXktF2qsLg%3D 10.1016/j.jviromet.2008.12.006 19126416
-
M. Kondo K. Sudo R. Tanaka, et al. 2009 Quantitation of HIV-1 group M proviral DNA using TaqMan MGB real-time PCR J Virol Methods 157 141 146 1:CAS:528:DC%2BD1MXktF2qsLg%3D 10.1016/j.jviromet.2008.12.006 19126416
-
(2009)
J Virol Methods
, vol.157
, pp. 141-146
-
-
Kondo, M.1
Sudo, K.2
Tanaka, R.3
-
13
-
-
0029075130
-
Lower in vivo mutation rate of human immunodeficiency virus type 1 than that predicted from the fidelity of purified reverse transcriptase
-
1:CAS:528:DyaK2MXmvFWgtr0%3D 7541846
-
L. M. Mansky H. M. Temin 1995 Lower in vivo mutation rate of human immunodeficiency virus type 1 than that predicted from the fidelity of purified reverse transcriptase J Virol 69 5087 5094 1:CAS:528:DyaK2MXmvFWgtr0%3D 7541846
-
(1995)
J Virol
, vol.69
, pp. 5087-5094
-
-
Mansky, L.M.1
Temin, H.M.2
-
14
-
-
19944428265
-
Multiple, linked human immunodeficiency virus type 1 drug resistance mutations in treatment-experienced patients are missed by standard genotype analysis
-
DOI 10.1128/JCM.43.1.406-413.2005
-
S. Palmer M. Kearney F. Maldarelli, et al. 2005 Multiple, linked Human Immunodeficiency Virus type 1 drug resistance mutations in treatment-experienced patients are missed by standard genotype analysis J Clin Microbiol 43 1 406 413 1:CAS:528:DC%2BD2MXhtF2msr8%3D 10.1128/JCM.43.1.406-413.2005 15635002 (Pubitemid 40096331)
-
(2005)
Journal of Clinical Microbiology
, vol.43
, Issue.1
, pp. 406-413
-
-
Palmer, S.1
Kearney, M.2
Maldarelli, F.3
Halvas, E.K.4
Bixby, C.J.5
Bazmi, H.6
Rock, D.7
Falloon, J.8
Davey Jr., R.T.9
Dewar, R.L.10
Metcalf, J.A.11
Hammer, S.12
Mellors, J.W.13
Coffin, J.M.14
-
15
-
-
0029967721
-
HIV-1 dynamics in vivo: Viron clearance rate, infected cell life-span, and viral generation time
-
1:CAS:528:DyaK28XhslSjsbY%3D 10.1126/science.271.5255.1582 8599114
-
A. S. Perelson A. U. Neumann M. Markowitz, et al. 1996 HIV-1 dynamics in vivo: viron clearance rate, infected cell life-span, and viral generation time Science 271 5255 1582 1586 1:CAS:528:DyaK28XhslSjsbY%3D 10.1126/science.271. 5255.1582 8599114
-
(1996)
Science
, vol.271
, Issue.5255
, pp. 1582-1586
-
-
Perelson, A.S.1
Neumann, A.U.2
Markowitz, M.3
-
16
-
-
0024267430
-
Fidelity of HIV-1 reverse transcriptase
-
1:CAS:528:DyaL1MXhs12jtrw%3D 10.1126/science.2460924 2460924
-
B. D. Preston B. J. Poiesz L. A. Loeb 1988 Fidelity of HIV-1 reverse transcriptase Science 242 1168 1171 1:CAS:528:DyaL1MXhs12jtrw%3D 10.1126/science.2460924 2460924
-
(1988)
Science
, vol.242
, pp. 1168-1171
-
-
Preston, B.D.1
Poiesz, B.J.2
Loeb, L.A.3
-
17
-
-
33751235598
-
Genotypic predictors of human immunodeficiency virus type 1 drug resistance
-
DOI 10.1073/pnas.0607274103
-
S. Y. Rhee J. Taylor G. Wadhera, et al. 2006 Genotypic predictors of human immunodeficiency virus type 1 drug resistance Proc Natl Acad Sci USA 103 17355 17360 1:CAS:528:DC%2BD28Xht1KqsbrL 10.1073/pnas.0607274103 17065321 (Pubitemid 44788973)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.46
, pp. 17355-17360
-
-
Rhee, S.-Y.1
Taylor, J.2
Wadhera, G.3
Ben-Hur, A.4
Brutlag, D.L.5
Shafer, R.W.6
-
18
-
-
0032578505
-
Drug-resistant HIV-1 proteases identify enzyme residues important for substrate selection and catalytic rate
-
DOI 10.1021/bi980612k
-
T. W. Ridky A. Kikonyogo J. Leis, et al. 1998 Drugresistant HIV-1 proteases identify enzyme residues important for substrate selection and catalytic rate Biochemistry 37 39 11835 11845 10.1021/bi980612k (Pubitemid 28455561)
-
(1998)
Biochemistry
, vol.37
, Issue.39
, pp. 13835-13845
-
-
Ridky, T.W.1
Kikonyogo, A.2
Leis, J.3
Gulnik, S.4
Copeland, T.5
Erickson, J.6
Wlodawer, A.7
Kurinov, I.8
Harrison, R.W.9
Weber, I.T.10
-
19
-
-
0024273119
-
The accuracy of reverse transcriptase from HIV-1
-
1:CAS:528:DyaL1MXjs1SmsQ%3D%3D 10.1126/science.2460925 2460925
-
J. D. Roberts K. Bebenek T. A. Kunkel 1988 The accuracy of reverse transcriptase from HIV-1 Science 242 1171 1173 1:CAS:528:DyaL1MXjs1SmsQ%3D%3D 10.1126/science.2460925 2460925
-
(1988)
Science
, vol.242
, pp. 1171-1173
-
-
Roberts, J.D.1
Bebenek, K.2
Kunkel, T.A.3
-
20
-
-
33746150392
-
Large-scale amplification, cloning and sequencing of near full-length HIV-1 subtype C genomes
-
DOI 10.1016/j.jviromet.2006.04.009, PII S0166093406001303
-
C. M. Rousseau B. A. Birditt A. R. McKay, et al. 2006 Large-scale amplification, cloning and sequencing of near full-length HIV-1 subtype C genomes J Virol Methods 136 118 125 1:CAS:528:DC%2BD28XntVylsL8%3D 10.1016/j.jviromet.2006.04.009 16701907 (Pubitemid 44081956)
-
(2006)
Journal of Virological Methods
, vol.136
, Issue.1-2
, pp. 118-125
-
-
Rousseau, C.M.1
Birditt, B.A.2
McKay, A.R.3
Stoddard, J.N.4
Lee, T.C.5
McLaughlin, S.6
Moore, S.W.7
Shindo, N.8
Learn, G.H.9
Korber, B.T.10
Brander, C.11
Goulder, P.J.R.12
Kiepiela, P.13
Walker, B.D.14
Mullins, J.I.15
-
21
-
-
0345701517
-
Treatment with indinavir, efavirenz, and adefovir after failure of nelfinavir therapy
-
DOI 10.1086/368287
-
A. J. Saah D. W. Haas DiNubile, et al. 2003 Treatment with Indinavir, Efavirenz, and Adefovir after failure of Nelfinavir therapy J Infect Dis 187 7 1157 1162 1:CAS:528:DC%2BD3sXjtlekurs%3D 10.1086/368287 12660932 (Pubitemid 36399359)
-
(2003)
Journal of Infectious Diseases
, vol.187
, Issue.7
, pp. 1157-1162
-
-
Saah, A.J.1
Haas, D.W.2
DiNubile, M.J.3
Chen, J.4
Holder, D.J.5
Rhodes, R.R.6
Shivaprakash, M.7
Bakshi, K.K.8
Danovich, R.M.9
Graham, D.J.10
Condra, J.H.11
-
22
-
-
41949124934
-
Deciphering human immunodeficiency virus type 1 transmission and early envelope diversification by single-genome amplification and sequencing
-
DOI 10.1128/JVI.02660-07
-
J. F. Salazar-Gonzalez E. Bailes K. T. Pham, et al. 2008 Deciphering Human Immunodeficiency Virus type 1 transmission and early envelope diversification by single genome amplification and sequencing J Virol 82 8 3952 3970 1:CAS:528:DC%2BD1cXksFWrur0%3D 10.1128/JVI.02660-07 18256145 (Pubitemid 351521232)
-
(2008)
Journal of Virology
, vol.82
, Issue.8
, pp. 3952-3970
-
-
Salazar-Gonzalez, J.F.1
Bailes, E.2
Pham, K.T.3
Salazar, M.G.4
Guffey, M.B.5
Keele, B.F.6
Derdeyn, C.A.7
Farmer, P.8
Hunter, E.9
Allen, S.10
Manigart, O.11
Mulenga, J.12
Anderson, J.A.13
Swanstrom, R.14
Haynes, B.F.15
Athreya, G.S.16
Korber, B.T.M.17
Sharp, P.M.18
Shaw, G.M.19
Hahn, B.H.20
more..
-
23
-
-
0036210739
-
Underestimation of HIV type 1 drug resistance mutations: Results from the ENVA-2 genotyping proficiency program
-
DOI 10.1089/088922202753472801
-
R. Schuurman D. Brambilla T. D. Groot, et al. 2002 Underestimation of HIV type 1 drug resistance mutations: results from the ENVA-2 genotyping proficiency program AIDS Res Hum Retroviruses 18 243 248 1:CAS:528: DC%2BD38Xit1WrurY%3D 10.1089/088922202753472801 11860670 (Pubitemid 34253141)
-
(2002)
AIDS Research and Human Retroviruses
, vol.18
, Issue.4
, pp. 243-248
-
-
Schuurman, R.1
Brambilla, D.2
De Groot, T.3
Huang, D.4
Land, S.5
Bremer, J.6
Benders, I.7
Boucher, C.A.B.8
-
24
-
-
0025124532
-
Human Immunodeficiency Virus-infected individuals contain provirus in small numbers of peripheral mononuclear cells and at low copy numbers
-
1:STN:280:DyaK3c7ht1Kmug%3D%3D 2296085
-
P. Simmonds P. Balfe J. F. Peutherer, et al. 1990 Human Immunodeficiency Virus-infected individuals contain provirus in small numbers of peripheral mononuclear cells and at low copy numbers J Virol 64 2 864 872 1:STN:280:DyaK3c7ht1Kmug%3D%3D 2296085
-
(1990)
J Virol
, vol.64
, Issue.2
, pp. 864-872
-
-
Simmonds, P.1
Balfe, P.2
Peutherer, J.F.3
-
25
-
-
0026665013
-
Quantitation of targets for PCR by use of limiting dilution
-
1:CAS:528:DyaK3sXhslSksw%3D%3D 1389177
-
P. J. Sykes S. H. Neoh M. J. Brisco, et al. 1992 Quantitation of targets for PCR by use of limiting dilution Biotechniques 13 3 444 449 1:CAS:528:DyaK3sXhslSksw%3D%3D 1389177
-
(1992)
Biotechniques
, vol.13
, Issue.3
, pp. 444-449
-
-
Sykes, P.J.1
Neoh, S.H.2
Brisco, M.J.3
-
26
-
-
38049028352
-
N348I in the connection domain of HIV-1 reverse transcriptase confers Zidovudine and Nevirapine resistance
-
1:CAS:528:DC%2BD1cXmvVSlsLk%3D 10.1371/journal.pmed.0040335
-
S. H. Yap C. W. Sheen J. Fahey, et al. 2007 N348I in the connection domain of HIV-1 reverse transcriptase confers Zidovudine and Nevirapine resistance Plos Med 4 12 1887 1899 1:CAS:528:DC%2BD1cXmvVSlsLk%3D 10.1371/journal.pmed.0040335
-
(2007)
Plos Med
, vol.4
, Issue.12
, pp. 1887-1899
-
-
Yap, S.H.1
Sheen, C.W.2
Fahey, J.3
|