Dual channel colocalization for cell cycle analysis using 3D confocal microscopy

Proceedings - International Conference on Pattern Recognition

Volumn , Issue , 2010, Pages 2580-2583

  Jaeger, Stefan ^a   Palaniappan, Kannappan ^a   Casas Delucchi, Corella S ^b   Cardoso, M Cristina ^b  

^a Department of Electrical Engineering and Computer Science   (United States)

^b DARMSTADT UNIVERSITY OF TECHNOLOGY   (Germany)

Author keywords

Cell cycle analysis; Colocalization; Confocal microscopy

Indexed keywords

3-D IMAGE; CELL CYCLE ANALYSIS; CO-LOCALIZATION STUDIES; COLOCALIZATION; CONFOCAL MICROSCOPES; D-CHANNEL; DUAL CHANNEL; MOUSE CELLS; SPINNING DISKS; TWO CHANNEL;

CONFOCAL MICROSCOPY; MATRIX ALGEBRA; PATTERN RECOGNITION;

THREE DIMENSIONAL;

EID: 78149471980     PISSN: 10514651     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/ICPR.2010.632     Document Type: Conference Paper

References (16)

1. M. Wang, X. Zhou, F. Li, J. Huckins, R. King, and S. Wong, "Novel cell segmentation and online SVM for cell cycle phase identification in automated microscopy," Bioinformatics, vol. 24, no. 1, pp. 94-101, 2008.
2. T. Buck, A. Rao, L. Coelho, M. Fuhrman, J. Jarvik, P. Berget, and R. Murphy, "Cell cycle dependence of protein subcellular location inferred from static, asynchronous images," in Int. Conf. of the IEEE Engineering in Medicine and Biology Society, vol. 1, 2009, pp. 1016-1019.
3. D. Knowles, D. Sudar, C. Bator-Kelly, M. Bissell, and S. Lelièvre, "Automated local bright feature image analysis of nuclear protein distribution identifies changes in tissue phenotype," Proceedings of the National Academy of Sciences, vol. 103, no. 12, pp. 4445-4450, 2006.
4. N. Harder, F. Mora-Bermudez, and W. G. et al., "Automatic analysis of dividing cells in live cell movies to detect mitotic delays and correlate phenotypes in time," Genome Research, vol. 19, no. 11, pp. 2113-2124, 2009.
5. E. Meijering, O. Dzyubachyk, I. Smal, and W. van Cappellen, "Tracking in cell and developmental biology," in Seminars in Cell and Developmental Biology. Elsevier, 2009, pp. 894-902.
6. I. Ersoy, F. Bunyak, V. Chagin, M. Cardoso, and K. Palaniappan, "Segmentation and classification of cell cycle phases in fluorescence imaging," in Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2009, pp. 617-624.
7. H. Leonhardt, H. Rahn, P. Weinzierl, A. Sporbert, T. Cremer, D. Zink, and M. Cardoso, "Dynamics of DNA replication factories in living cells," Journal of Cell Biology, vol. 149, no. 2, p. 271, 2000.
8. A. Sporbert, A. Gahl, R. Ankerhold, H. Leonhardt, and M. Cardoso, "DNA polymerase clamp shows little turnover at established replication sites but sequential de novo assembly at adjacent origin clusters," Molecular cell, vol. 10, no. 6, pp. 1355-1365, 2002.
9. D. Demandolx and J. Davoust, "Multicolour analysis and local image correlation in confocal microscopy," Journal of Microscopy, vol. 185, no. 1, pp. 21-36, 1997.
10. A. Smallcombe, "Multicolor imaging: the important question of co-localization," Biotechniques, vol. 30, no. 6, pp. 1240-1247, 2001.
11. F. Bunyak, K. Palaniappan, V. Chagin, and M. Cardoso, "Cell segmentation in time-lapse fluorescence microscopy with temporally varying sub-cellular fusion protein patterns," in Int. Conf. of the IEEE Engineering in Medicine and Biology Society, 2009, pp. 1424-1428.
12. rd IEEE Int. Symp. Biomed. Imaging (ISBI), April 2006, pp. 1040-1043.
13. D. Padfield, J. Rittscher, T. Sebastian, N. Thomas, and B. Roysam, "Spatio-temporal cell cycle analysis using 3D level set segmentation of unstained nuclei in line scan confocal fluorescence images," in 3rd IEEE International Symposium on Biomedical Imaging: Nano to Macro, 2006, 2006, pp. 1036-1039.
14. A. Frangi, W. Niessen, K. Vincken, and M. Viergever, "Multiscale vessel enhancement filtering," in Medical Image Computing and Computer-Assisted Intervention (MICCAI), 1998, pp. 130-137.
15. R. Kerekes, S. Gleason, N. Trivedi, and D. Solecki, "Automated 3-D tracking of centrosomes in sequences of confocal image stacks," in Int. Conf. of the IEEE Engineering in Medicine and Biology Society, vol. 1, 2009, pp. 6994-6997.
16. C. Westin, S. Maier, H. Mamata, A. Nabavi, F. Jolesz, and R. Kikinis, "Processing and visualization for diffusion tensor MRI," Medical Image Analysis, vol. 6, no. 2, pp. 93-108, 2002.