Automated local bright feature image analysis of nuclear protein distribution identifies changes in tissue phenotype

Proceedings of the National Academy of Sciences of the United States of America

Volumn 103, Issue 12, 2006, Pages 4445-4450

  Knowles, David W ^a   Sudar, Damir ^a   Bator Kelly, Carol ^b   Bissell, Mina J ^a   Lelièvre, Sophie A ^b,c  

^a LAWRENCE BERKELEY NATIONAL LABORATORY   (United States)

^b PURDUE UNIVERSITY   (United States)

^c PURDUE UNIVERSITY   (United States)

Author keywords

3D automated nuclear segmentation; Breast cancer; Nuclear organization; NuMA; Quantitative imaging

Indexed keywords

NUCLEAR PROTEIN;

ARTICLE; AUTOANALYSIS; AUTOMATION; BREAST CANCER; FLUORESCENCE MICROSCOPY; HUMAN; HUMAN CELL; IMAGE ANALYSIS; IMMUNOHISTOCHEMISTRY; PHENOTYPE; PRIORITY JOURNAL; PROTEIN LOCALIZATION; QUANTITATIVE ANALYSIS; THREE DIMENSIONAL IMAGING;

ANTIGENS, NUCLEAR; BREAST; BREAST NEOPLASMS; CELL PROLIFERATION; FEMALE; HUMANS; MICROSCOPY, CONFOCAL; MICROSCOPY, FLUORESCENCE; NUCLEAR MATRIX-ASSOCIATED PROTEINS; PHENOTYPE; TUMOR CELLS, CULTURED;

EID: 33645230757     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0509944102     Document Type: Article

References (49)

1. Lelièvre, S. A., Bissell, M. J. & Pujuguet, P. (2000) Crit. Rev. Eukaryotic Gene Expression 10, 13-20.
2. Dillon, N. & Festenstein, R. (2002) Trends Genet. 18, 252-258.
3. Mancini, M. A., He, D., Ouspenski, I. I. & Brinkley, B. R. (1996) J. Cell Biochem. 62, 158-164.
4. Gerlich, D., Beaudouin, J., Gebhard, M., Ellenberg, J. & Eils, R. (2001) Nat. Cell Biol. 3, 852-855.
5. Lelièvre, S. A., Weaver, V. M., Nickerson, J. A., Larabell, C. A., Bhaumik, A., Petersen, O. W. & Bissell, M. J. (1998) Proc. Natl. Acad. Sci. USA 95, 14711-14716.
6. Antoniou, M., Carmo-Fonseca, M., Ferreira, J. & Lamond, A. I. (1993) J. Cell Biol. 123, 1055-1068.
7. Beil, M., Durschmied, D., Paschke, S., Schreiner, B., Nolte, U., Bruel, A. & Irinopoulou, T. (2002) Cytometry 47, 217-225.
8. Gribbon, C., Dahm, R., Prescott, A. R. & Quinlan, R. A. (2002) Eur. J. Cell Biol. 81, 557-566.
9. Cammas, F., Oulad-Abdelghani, M., Vonesch, J. L., Huss-Garcia, Y., Chambon, P. & Losson, R. (2002) J. Cell Sci. 115, 3439-3448.
10. Plachot, C. & Lelièvre, S. A. (2004) Exp. Cell Res. 298, 122-132.
11. Powers, M. J., Janigian, D. M., Wack, K. E., Baker, C. S., Beer Stolz, D. & Griffith, L. G. (2002) Tissue Eng. 8, 499-513.
12. Gudjonsson, T., Ronnov-Jessen, L., Villadsen, R., Bissell, M. J. & Petersen, O. W. (2003) Methods 30, 247-255.
13. Jacks, T. & Weinberg, R. A. (2002) Cell 111, 923-925.
14. Bissell, M. J., Weaver, V. M., Lelievre, S. A., Wang, F., Petersen, O. W. & Schmeichel, K. L. (1999) Cancer Res. 59, 1757-1763.
15. Bissell, M. J., Rizki, A. & Mian, S. (2003) Curr. Opin. Cell Biol. 15, 753-762.
16. Weaver, V. M., Lelievre, S., Lakins, J. N., Chienek, M. A., Jones, J. C., Giancotti, F., Werb, Z. & Bissell, M. J. (2002) Cancer Cell 2, 205-216.
17. Petersen, O. W., Ronnov-Jessen, L., Hewlett, A. R. & Bissell, M. J. (1992) Proc. Natl. Acad. Sci. USA 89, 9064-9068.
18. Briand, P., Petersen, O. W. & Van Deurs, B. (1987) In Vitro Cell Dev. Biol. 23, 181-188.
19. Briand, P., Nielsen, K. V., Madsen, M. W. & Petersen, O. W. (1996) Cancer Res. 56, 2039-2044.
20. Weaver, V. M., Petersen, O. W., Wang, F., Larabell, C. A., Briand, P., Damsky, C. & Bissell, M. J. (1997) J. Cell Biol. 137, 231-245.
21. Weaver, V. M., Carson, C. E. Walker, P. R., Chaly, N. Lach, B., Raymond, Y., Brown, D. L. & Sikorska, M. (1996) J. Cell Sci. 109, 45-56.
22. Zweyer, M., Riederer, B. M., Ochs, R. L., Fackelmayer, F. O., Kohwi-Shigematsu, T., Bareggi, R., Narducci, P. & Martelli, A. M. (1997) Exp. Cell Res. 230, 325-336.
23. Mattagajasingh, S. N., Huang, S. C., Hartenstein, J. S., Snyder, M., Marchesi, V. T. & Benz, E. J. (1999) J. Cell Biol. 145, 29-43.
24. Merdes, A. & Cleveland, D. W. (1998) J. Cell Sci. 111, 71-79.
25. Sodja, C., Walker, P. R., Brown, D. L. & Chaly, N. (1997) Biochem. Cell Biol. 75, 399-414.
26. Gil, J. & Wu, H. S. (2003) Cancer Invest. 21, 950-959.
27. Zink, D., Fische, A. H. & Nickerson, J. A. (2004) Nat. Rev. Cancer 4, 677-687.
28. Shumaker, D. K., Kuczmarski, E. R. & Goldman, R. D. (2003) Curr. Opin. Cell Biol. 15, 358-366.
29. Ancin, H., Roysam, B., Dufresne, T. E., Chestnut, M. M., Ridder, G. M., Szarowski, D. H. & Turner, J. N. (1996) Cytometry 25, 221-234.
30. Irinopoulou, T., Vassy, J., Beil, M., Nicolopoulou, P., Encaoua, D. & Rigaut, J. P. (1997) Cytometry 27, 99-105.
31. Lieb, J. D., Ortiz de Solorzano, C., Rodriguez, E. G., Jones, A., Angelo, M., Lockett, S. & Meyer, B. J. (2000) Genetics 156, 1603-1621.
32. Schupp, S., Elmoataz, A., Herlin, P. & Bloyet, D. (2001) Anal. Quant. Cytol. Histol. 23, 257-267.
33. Eils, R. & Athale, C. (2003) J. Cell Biol. 161, 477-481.
34. Voss, T. C., Demarco, I. A., Booker, C. F. & Day, R. N. (2004) BioTechniques 36, 240-247.
35. Swedlow, J. S., Goldberg, I., Brauner, E. & Sorger, P. (2003) Science 300, 100-102.
36. Ecker, R. C. & Steiner, G. E. (2004) Cytometry 59A, 182-190.
37. Rigaut, J. P., Vassy, J., Herlin, P., Duigou, F., Masson, E., Briane, D., Foucrier, J., Carvajal-Gonzalez, S., Downs, A. M. & Mandard, A. M. (1991) Cytometry 12, 511-524.
38. Belien, J. A., van Ginkel, H. A., Tekola, P., Ploeger, L. S., Poulin, N. M., Baak, J. P. & van Diest, P. J. (2002) Cytometry 49, 12-21.
39. Lin, G., Adiga, U., Olson, K., Guzowski, J. F., Barnes, C. A. & Roysam, B. (2003) Cytometry 56A, 23-36.
40. Castleman, K. R. (1996) Digital Image Processing (Prentice-Hall, Englewood Cliffs, NJ).
41. Russ, J. C. (1992) The Image Processing Handbook (CRC, Boca Raton, FL).
42. Jahne, B. (2002) Digital Imaging Processing (Springer, Berlin), 5th Ed.
43. Soille, P. (2003) Morphological Image Analysis (Springer, Berlin), 2nd Ed.
44. Tvarusko, W., Bentele, M., Misteli, T., Rudolf, R., Kaether, C., Spector, D. L., Gerdes, H. H. & Eils, R. (1999) Proc. Natl. Acad. Sci. USA 96, 7950-7955.
45. Eils, R., Gerlich, D., Tvarusko, W., Spector, D. L. & Misteli, T. (2000) Mol. Biol. Cell 11, 413-418.
46. Platani, M., Goldberg, I., Swedlow, J. R. & Lamond, A. I. (2000) J. Cell Biol. 151, 1561-1574.
47. Kyan, M. J., Guan, L., Arnison, M. R. & Cogswell, C. J. (2001) IEEE Trans. Biomed. Eng. 48, 1306-1318.
48. Chin, K., Ortiz de Solorzano, C., Knowles, D., Jones, A., Chou, W., Rodriguez, E. G., Kuo, W. L., Ljung, B. M., Chew, K., Myambo, K., et al. (2004) Nat. Genet. 36, 984-988.
49. Marr, D. (1982) Vision (Freeman, New York).