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Volumn 60, Issue 4, 2010, Pages 816-828

In Situ Dynamics of Microbial Communities during Decomposition of Wheat, Rape, and Alfalfa Residues

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; RIBOSOME DNA; RNA 16S;

EID: 78149467575     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00248-010-9705-7     Document Type: Article
Times cited : (68)

References (54)
  • 1
    • 35548993212 scopus 로고    scopus 로고
    • Efficiency of near-infrared reflectance spectroscopy to assess and predict the stage of transformation of organic matter in the composting process
    • Albrecht R, Joffre R, Gros R, Le Petit J, Terrom G, Périssol C (2008) Efficiency of near-infrared reflectance spectroscopy to assess and predict the stage of transformation of organic matter in the composting process. Bioresour Technol 99: 448-455.
    • (2008) Bioresour Technol , vol.99 , pp. 448-455
    • Albrecht, R.1    Joffre, R.2    Gros, R.3    Le Petit, J.4    Terrom, G.5    Périssol, C.6
  • 3
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann RI, Ludwig W, Schleifer K-H (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59: 143-169.
    • (1995) Microbiol Rev , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.-H.3
  • 4
    • 33748458674 scopus 로고    scopus 로고
    • Microbial colonization of beech and spruce litter-influence of decomposition site and plant litter species on the diversity of microbial community
    • Aneja MK, Sharma S, Fleischmann F, Stich S, Heller W, Bahnweg G, Munch JC, Schloter M (2006) Microbial colonization of beech and spruce litter-influence of decomposition site and plant litter species on the diversity of microbial community. Microb Ecol 52: 127-135.
    • (2006) Microb Ecol , vol.52 , pp. 127-135
    • Aneja, M.K.1    Sharma, S.2    Fleischmann, F.3    Stich, S.4    Heller, W.5    Bahnweg, G.6    Munch, J.C.7    Schloter, M.8
  • 5
    • 58149520176 scopus 로고    scopus 로고
    • Impact of wheat straw decomposition on successional patterns of soil microbial community structure
    • Bastian F, Bouziri L, Nicolardot B, Ranjard L (2009) Impact of wheat straw decomposition on successional patterns of soil microbial community structure. Soil Biol Biochem 41: 262-275.
    • (2009) Soil Biol Biochem , vol.41 , pp. 262-275
    • Bastian, F.1    Bouziri, L.2    Nicolardot, B.3    Ranjard, L.4
  • 6
    • 68849114766 scopus 로고    scopus 로고
    • Residue chemistry and microbial community structure during decomposition of eucalypt, wheat and vetch residues
    • Baumann K, Marschner P, Smernik RJ, Baldock JA (2009) Residue chemistry and microbial community structure during decomposition of eucalypt, wheat and vetch residues. Soil Biol Biochem 41: 1966-1975.
    • (2009) Soil Biol Biochem , vol.41 , pp. 1966-1975
    • Baumann, K.1    Marschner, P.2    Smernik, R.J.3    Baldock, J.A.4
  • 9
    • 0034579175 scopus 로고    scopus 로고
    • Quantifying short-term effects of crop rotations on soil organic carbon in Southwestern Saskatchewan
    • Campbell CA, Zentner RP, Selles F, Biederbeck VO (2000) Quantifying short-term effects of crop rotations on soil organic carbon in Southwestern Saskatchewan. Can J Soil Sci 80: 193-202.
    • (2000) Can J Soil Sci , vol.80 , pp. 193-202
    • Campbell, C.A.1    Zentner, R.P.2    Selles, F.3    Biederbeck, V.O.4
  • 10
    • 57549096497 scopus 로고    scopus 로고
    • Mineralization dynamics and biochemical properties during initial decomposition of plant and animal residues in soil
    • Cayuela ML, Sinicco T, Mondini C (2009) Mineralization dynamics and biochemical properties during initial decomposition of plant and animal residues in soil. Appl Soil Ecol 41: 118-127.
    • (2009) Appl Soil Ecol , vol.41 , pp. 118-127
    • Cayuela, M.L.1    Sinicco, T.2    Mondini, C.3
  • 11
  • 13
    • 0032842007 scopus 로고    scopus 로고
    • Inhibition of Pythium ultimum and Rhizoctonia solani by shredded leaves of Brassica species
    • Charron CS, Sams CE (1999) Inhibition of Pythium ultimum and Rhizoctonia solani by shredded leaves of Brassica species. J Am Soc Hortic Sci 124: 462-467.
    • (1999) J Am Soc Hortic Sci , vol.124 , pp. 462-467
    • Charron, C.S.1    Sams, C.E.2
  • 14
    • 20444406724 scopus 로고    scopus 로고
    • The ade4 package-I: one-table methods
    • Chessel D, Dufour AB, Thioulouse J (2004) The ade4 package-I: one-table methods. R News 4: 5-10.
    • (2004) R News , vol.4 , pp. 5-10
    • Chessel, D.1    Dufour, A.B.2    Thioulouse, J.3
  • 15
    • 55449122505 scopus 로고    scopus 로고
    • Application of near infrared spectrometry for analysis of soils, litter and plant materials
    • Chodak M (2008) Application of near infrared spectrometry for analysis of soils, litter and plant materials. Pol J Environ Stud 17: 631-642.
    • (2008) Pol J Environ Stud , vol.17 , pp. 631-642
    • Chodak, M.1
  • 16
    • 33745647728 scopus 로고    scopus 로고
    • Soil moisture, carbon and nitrogen dynamics following incorporation and surface application of labelled crop residues in soil columns
    • Coppens F, Garnier P, De Gryze S, Merckx R, Recous S (2006) Soil moisture, carbon and nitrogen dynamics following incorporation and surface application of labelled crop residues in soil columns. Eur J Soil Sci 57: 894-905.
    • (2006) Eur J Soil Sci , vol.57 , pp. 894-905
    • Coppens, F.1    Garnier, P.2    de Gryze, S.3    Merckx, R.4    Recous, S.5
  • 17
    • 23744460935 scopus 로고    scopus 로고
    • Living in a fungal world: impact of fungi on soil bacterial niche development
    • De Boer W, Folman LB, Summerbell RC, Boddy L (2005) Living in a fungal world: impact of fungi on soil bacterial niche development. FEMS Microbiol Rev 29: 795-811.
    • (2005) FEMS Microbiol Rev , vol.29 , pp. 795-811
    • de Boer, W.1    Folman, L.B.2    Summerbell, R.C.3    Boddy, L.4
  • 18
    • 0033040923 scopus 로고    scopus 로고
    • Phosphorus availability in a forest soil determined with a respiratory assay compared to chemical methods
    • Demetz M, Insam H (1999) Phosphorus availability in a forest soil determined with a respiratory assay compared to chemical methods. Geoderma 89: 259-271.
    • (1999) Geoderma , vol.89 , pp. 259-271
    • Demetz, M.1    Insam, H.2
  • 19
    • 33947236971 scopus 로고    scopus 로고
    • Toward an ecological classification of soil bacteria
    • Fierer N, Bradford MA, Jackson RB (2007) Toward an ecological classification of soil bacteria. Ecology 88: 1354-1364.
    • (2007) Ecology , vol.88 , pp. 1354-1364
    • Fierer, N.1    Bradford, M.A.2    Jackson, R.B.3
  • 20
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: an approach using the bootstrap
    • Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 21
    • 0038346093 scopus 로고    scopus 로고
    • The priming effect of organic matter: a question of microbial question?
    • Fontaine S, Mariotti A, Abbadie L (2003) The priming effect of organic matter: a question of microbial question? Soil Biol Biochem 35: 837-843.
    • (2003) Soil Biol Biochem , vol.35 , pp. 837-843
    • Fontaine, S.1    Mariotti, A.2    Abbadie, L.3
  • 22
    • 0030152155 scopus 로고    scopus 로고
    • Leaf optical properties with explicit description of its biochemical c: direct and inverse problems
    • Fourty T, Baret F, Jacquemoud S, Schmuck G, Verdebout J (1996) Leaf optical properties with explicit description of its biochemical composition: direct and inverse problems. Remote Sens Environ 56: 104-117.
    • (1996) Remote Sens Environ , vol.56 , pp. 104-117
    • Fourty, T.1    Baret, F.2    Jacquemoud, S.3    Schmuck, G.4    Verdebout, J.5
  • 24
    • 0032171231 scopus 로고    scopus 로고
    • Toxicity of heavy metals to microorganisms and microbial processes in agricultural soils: a review
    • Giller KE, Witter E, McGrath SE (1998) Toxicity of heavy metals to microorganisms and microbial processes in agricultural soils: a review. Soil Biol Biochem 30: 1389-1414.
    • (1998) Soil Biol Biochem , vol.30 , pp. 1389-1414
    • Giller, K.E.1    Witter, E.2    McGrath, S.E.3
  • 25
    • 0002996163 scopus 로고    scopus 로고
    • Plant compounds and their turnover and stability as soil organic matter
    • E. D. Schulze, M. Heimann, S. Harrison, E. Holland, J. L. Lloyd, C. Prentice, and D. Schimel (Eds.), San Diego: Academic Press
    • Gleixner G, Czimczik CJ, Kramer C, Lühker B, Schmidt MWI (2001) Plant compounds and their turnover and stability as soil organic matter. In: Schulze ED, Heimann M, Harrison S, Holland E, Lloyd JL, Prentice C, Schimel D (eds) Global biogeochemical cycles in the climate system. Academic Press, San Diego, pp 201-215.
    • (2001) Global Biogeochemical Cycles in the Climate System , pp. 201-215
    • Gleixner, G.1    Czimczik, C.J.2    Kramer, C.3    Lühker, B.4    Schmidt, M.W.I.5
  • 26
    • 0023466458 scopus 로고
    • Litter placement effects on microbial and organic-matter dynamics in an agrosystem
    • Holland EA, Coleman DC (1987) Litter placement effects on microbial and organic-matter dynamics in an agrosystem. Ecology 68: 425-433.
    • (1987) Ecology , vol.68 , pp. 425-433
    • Holland, E.A.1    Coleman, D.C.2
  • 28
    • 0027079499 scopus 로고
    • The use of near-infrared reflectance spectroscopy in litter decomposition studies
    • Joffre R, Gillon D, Dardenne P, Agneessens R, Biston R (1992) The use of near-infrared reflectance spectroscopy in litter decomposition studies. Ann Sci For 49: 481-488.
    • (1992) Ann Sci For , vol.49 , pp. 481-488
    • Joffre, R.1    Gillon, D.2    Dardenne, P.3    Agneessens, R.4    Biston, R.5
  • 29
    • 0019296687 scopus 로고
    • A simple model for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura M (1980) A simple model for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16: 111-120.
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 30
    • 4544336605 scopus 로고    scopus 로고
    • Carbon sequestration and stabilization in soils: implications for soil productivity and climate change
    • Kuan MG (2004) Carbon sequestration and stabilization in soils: implications for soil productivity and climate change. Soil Sci Plant Nutr 50: 467-476.
    • (2004) Soil Sci Plant Nutr , vol.50 , pp. 467-476
    • Kuan, M.G.1
  • 31
    • 2942636040 scopus 로고    scopus 로고
    • Soil carbon sequestration impacts on global climate change and food security
    • Lal R (2004) Soil carbon sequestration impacts on global climate change and food security. Science 304: 1623-1627.
    • (2004) Science , vol.304 , pp. 1623-1627
    • Lal, R.1
  • 32
    • 0032981853 scopus 로고    scopus 로고
    • Changes in microbial biomass and community composition, and soil carbon and nitrogen pools after incorporation of rye into three California agricultural soils
    • Lundquist E, Jackson LE, Scow K, Hsu C (1999) Changes in microbial biomass and community composition, and soil carbon and nitrogen pools after incorporation of rye into three California agricultural soils. Soil Biol Biochem 31: 221-236.
    • (1999) Soil Biol Biochem , vol.31 , pp. 221-236
    • Lundquist, E.1    Jackson, L.E.2    Scow, K.3    Hsu, C.4
  • 34
    • 0028181604 scopus 로고
    • Carbon and nitrogen cycling through soil microbial biomass at various temperatures
    • Nicolardot B, Fauvet G, Cheneby D (1994) Carbon and nitrogen cycling through soil microbial biomass at various temperatures. Soil Biol Biochem 26: 253-261.
    • (1994) Soil Biol Biochem , vol.26 , pp. 253-261
    • Nicolardot, B.1    Fauvet, G.2    Cheneby, D.3
  • 35
    • 0035134715 scopus 로고    scopus 로고
    • Simulation of C and N mineralization during crop residue decomposition: a simple dynamic model based on the C:N ratio of the residues
    • Nicolardot B, Recous S, Mary B (2001) Simulation of C and N mineralization during crop residue decomposition: a simple dynamic model based on the C: N ratio of the residues. Plan Soil 228: 83-103.
    • (2001) Plan Soil , vol.228 , pp. 83-103
    • Nicolardot, B.1    Recous, S.2    Mary, B.3
  • 36
    • 34247217503 scopus 로고    scopus 로고
    • A microcosm experiment to evaluate the influence of the location and quality of plant residues on residue decomposition and genetic structure of soil microbial communities
    • Nicolardot B, Bouziri L, Bastian F, Ranjard L (2007) A microcosm experiment to evaluate the influence of the location and quality of plant residues on residue decomposition and genetic structure of soil microbial communities. Soil Biol Biochem 39: 1631-1644.
    • (2007) Soil Biol Biochem , vol.39 , pp. 1631-1644
    • Nicolardot, B.1    Bouziri, L.2    Bastian, F.3    Ranjard, L.4
  • 38
    • 0036934630 scopus 로고    scopus 로고
    • Impact of a change in tillage and crop residue management practice on soil chemical and microbiological properties in a cereal-producing red duplex soil in NSW, Australia
    • Pankhurst CE, Kirkby CA, Hawke BG, Harch BD (2002) Impact of a change in tillage and crop residue management practice on soil chemical and microbiological properties in a cereal-producing red duplex soil in NSW, Australia. Biol Fertil Soils 35: 189-196.
    • (2002) Biol Fertil Soils , vol.35 , pp. 189-196
    • Pankhurst, C.E.1    Kirkby, C.A.2    Hawke, B.G.3    Harch, B.D.4
  • 39
    • 85102482407 scopus 로고
    • Factors affecting the decomposition of crop residues by microorganisms
    • Oschwld, WR, ASA, CSSA, SSSA, Madison, WI
    • Parr JF, Papendick RI (1978) Factors affecting the decomposition of crop residues by microorganisms. In: Oschwld WR (ed.) Crop residues management systems. ASA Spec. Publ. 31. ASA, CSSA, SSSA, Madison, WI, pp: 101-129.
    • (1978) Crop residues management systems. ASA Spec. Publ , vol.31 , pp. 101-129
    • Parr, J.F.1    Papendick, R.I.2
  • 40
    • 0002512962 scopus 로고    scopus 로고
    • Humus and soil conservation
    • A. Piccolo (Ed.), Amsterdam: Elsevier
    • Piccolo A (1996) Humus and soil conservation. In: Piccolo A (ed) Humic substances in terrestrial ecosystems. Elsevier, Amsterdam, pp 225-264.
    • (1996) Humic Substances in Terrestrial Ecosystems , pp. 225-264
    • Piccolo, A.1
  • 41
    • 15944385343 scopus 로고    scopus 로고
    • Flux and turnover of fixed carbon in soil microbial biomass of limed and unlimed plots of an upland grassland ecosystem
    • Rangel-Castro JI, Prosser JI, Ostle N, Scrimgeour CM, Killham K, Meharg AA (2005) Flux and turnover of fixed carbon in soil microbial biomass of limed and unlimed plots of an upland grassland ecosystem. Environ Microbiol 7: 544-552.
    • (2005) Environ Microbiol , vol.7 , pp. 544-552
    • Rangel-Castro, J.I.1    Prosser, J.I.2    Ostle, N.3    Scrimgeour, C.M.4    Killham, K.5    Meharg, A.A.6
  • 42
    • 0035489392 scopus 로고    scopus 로고
    • Characterization of bacterial and fungal soil communities by automated ribosomal intergenic spacer analysis fingerprints: biological and methodological variability
    • Ranjard L, Poly F, Lata JC, Mougel C, Thioulouse J, Nazaret S (2001) Characterization of bacterial and fungal soil communities by automated ribosomal intergenic spacer analysis fingerprints: biological and methodological variability. Appl Environ Microbiol 67: 4479-4487.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 4479-4487
    • Ranjard, L.1    Poly, F.2    Lata, J.C.3    Mougel, C.4    Thioulouse, J.5    Nazaret, S.6
  • 43
    • 0242676205 scopus 로고    scopus 로고
    • Sampling strategy in molecular ecology: influence of soil sample size on DNA fingerprinting analysis of fungal and bacterial communities
    • Ranjard L, Lejon DPH, Mougel C, Schehrer L, Merdinoglu D, Chaussod R (2003) Sampling strategy in molecular ecology: influence of soil sample size on DNA fingerprinting analysis of fungal and bacterial communities. Environ Microbiol 5: 1111-1120.
    • (2003) Environ Microbiol , vol.5 , pp. 1111-1120
    • Ranjard, L.1    Lejon, D.P.H.2    Mougel, C.3    Schehrer, L.4    Merdinoglu, D.5    Chaussod, R.6
  • 44
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 45
    • 0031833982 scopus 로고    scopus 로고
    • Biofumigation potential of brassicas-III. In vitro toxicity of isothiocyanates to soil-borne fungal pathogens
    • Sarwar M, Kirkegaard JA, Wong PTW, Desmarchelier JM (1998) Biofumigation potential of brassicas-III. In vitro toxicity of isothiocyanates to soil-borne fungal pathogens. Plant Soil 201: 103-112.
    • (1998) Plant Soil , vol.201 , pp. 103-112
    • Sarwar, M.1    Kirkegaard, J.A.2    Wong, P.T.W.3    Desmarchelier, J.M.4
  • 46
    • 28444494401 scopus 로고    scopus 로고
    • Decomposition and mineralization of organic residues predicted using near infrared spectroscopy
    • Shepherd KD, Vanlauwe B, Gachengo CN, Palm CA (2005) Decomposition and mineralization of organic residues predicted using near infrared spectroscopy. Plant Soil 277: 315-333.
    • (2005) Plant Soil , vol.277 , pp. 315-333
    • Shepherd, K.D.1    Vanlauwe, B.2    Gachengo, C.N.3    Palm, C.A.4
  • 48
    • 0001878986 scopus 로고    scopus 로고
    • Ade-4: a multivariate analysis and graphical display software
    • Thioulouse J, Chessel D, Dolédec S, Oliver JM (1997) Ade-4: a multivariate analysis and graphical display software. Stat Comput 7: 75-83.
    • (1997) Stat Comput , vol.7 , pp. 75-83
    • Thioulouse, J.1    Chessel, D.2    Dolédec, S.3    Oliver, J.M.4
  • 49
    • 0027968068 scopus 로고
    • ClustalW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positionspecific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ (1994) ClustalW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positionspecific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 50
    • 0034194739 scopus 로고    scopus 로고
    • Biochemical quality of crop residues and carbon and nitrogen mineralization kinetics under nonlimiting nitrogen conditions
    • Trinsoutrot I, Recous S, Bentz B, Lineres M, Cheneby D, Nicolardot B (2000) Biochemical quality of crop residues and carbon and nitrogen mineralization kinetics under nonlimiting nitrogen conditions. Soil Sci Soc Am J 64: 918-926.
    • (2000) Soil Sci Soc Am J , vol.64 , pp. 918-926
    • Trinsoutrot, I.1    Recous, S.2    Bentz, B.3    Lineres, M.4    Cheneby, D.5    Nicolardot, B.6
  • 51
    • 0030463956 scopus 로고    scopus 로고
    • Impact of residues quality on the C and N mineralization of leaf and root residues of three agroforestry species
    • Vanlauwe B, Nwoke OCN, Sanginga N, Merckx R (1996) Impact of residues quality on the C and N mineralization of leaf and root residues of three agroforestry species. Plant Soil 183: 221-231.
    • (1996) Plant Soil , vol.183 , pp. 221-231
    • Vanlauwe, B.1    Nwoke, O.C.N.2    Sanginga, N.3    Merckx, R.4
  • 52
    • 34548844441 scopus 로고    scopus 로고
    • Infrared spectroscopy and outer product analysis for quantification of fat, nitrogen, and moisture of cocoa powder
    • Barros VA, AS SA, Delgadillo I, Copikova J, Coimbra MA (2007) Infrared spectroscopy and outer product analysis for quantification of fat, nitrogen, and moisture of cocoa powder. Anal Chim Acta 601: 77-86.
    • (2007) Anal Chim Acta , vol.601 , pp. 77-86
    • Barros, V.A.1    As, S.A.2    Delgadillo, I.3    Copikova, J.4    Coimbra, M.A.5
  • 54
    • 32544448203 scopus 로고    scopus 로고
    • Chemical composition controls residue decomposition in soil differing in initial pH
    • Xu JM, Tang C, Chen ZL (2006) Chemical composition controls residue decomposition in soil differing in initial pH. Soil Biol Biochem 38: 544-552.
    • (2006) Soil Biol Biochem , vol.38 , pp. 544-552
    • Xu, J.M.1    Tang, C.2    Chen, Z.L.3


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