Residue chemistry and microbial community structure during decomposition of eucalypt, wheat and vetch residues

Soil Biology and Biochemistry

Volumn 41, Issue 9, 2009, Pages 1966-1975

  Baumann, Karen ^a   Marschner, Petra ^a   Smernik, Ronald J ^a   Baldock, Jeffrey A ^b  

^a UNIVERSITY OF ADELAIDE   (Australia)

^b CSIRO   (Australia)

Author keywords

C Chemistry; Microbial community structure; NMR; PLFA; Residue decomposition

Indexed keywords

C-CHEMISTRY; MICROBIAL COMMUNITY STRUCTURE; NMR; PLFA; RESIDUE DECOMPOSITION;

FATTY ACIDS; FORESTRY; NUCLEAR MAGNETIC RESONANCE; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PHOSPHOLIPIDS; SOCIAL SCIENCES;

DECOMPOSITION;

COMMUNITY COMPOSITION; COMMUNITY STRUCTURE; DECOMPOSITION; INOCULATION; INORGANIC NITROGEN; MICROBIAL COMMUNITY; MICROCOSM; NUCLEAR MAGNETIC RESONANCE; SUCCESSION; WHEAT;

TRITICUM AESTIVUM; VICIA;

EID: 68849114766     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2009.06.022     Document Type: Article

References (65)

1. Ågren G.I., Bosatta E., and Magill A.H. Combining theory and experiment to understand effects of inorganic nitrogen on litter decomposition. Oecologia 128 (2001) 94-98
2. Aneja M.K., Sharma S., Fleischmann F., Stich S., Heller W., Bahnweg G., Munch J.C., and Schloter M. Microbial colonization of beech and spruce litter - influence of decomposition site and plant litter species on the diversity of microbial community. Microbial Ecology 52 (2006) 127-135
3. Angers D.A., and Recous S. Decomposition of wheat straw and rye residues as affected by particle size. Plant and Soil 189 (1997) 197-203
4. Baldock J.A. Composition and cycling of organic carbon in soil. In: Marschner P., and Rengel Z. (Eds). Nutrient Cycling in Terrestrial Ecosystems (2007), Springer Verlag, Berlin Heidelberg 1-35
5. Baldock J.A., Masiello C.A., Gélinas Y., and Hedges J.I. Cycling and composition of organic matter in terrestrial and marine ecosystems. Marine Chemistry 92 (2004) 39-64
6. 13C NMR spectroscopy. Australian Journal of Soil Research 35 (1997) 1061-1083
7. Baldock J.A., and Skjemstad J.O. Role of the soil matrix and minerals in protecting natural organic materials against biological attack. Organic Geochemistry 31 (2000) 697-710
8. Baldock J.A., and Smernik R.S. Chemical composition and bioavailability of thermally altered Pinus resinosa (Red pine) wood. Organic Geochemistry 33 (2002) 1093-1109
9. Bastian F., Bouziri L., Nicolardot B., and Ranjard L. Impact of wheat straw decomposition on successional patterns of soil microbial community structure. Soil Biology & Biochemistry 41 (2009) 262-275
10. Bending G.D., and Turner M.K. Interaction of biochemical quality and particle size of crop residues and its effect on the microbial biomass and nitrogen dynamics following incorporation into soil. Biology and Fertility of Soils 29 (1999) 319-327
11. Berg B. Litter decomposition and organic matter turnover in northern forest soils. Forest Ecology and Management 133 (2000) 13-22
12. Bradley K., Drijber R.A., and Knops J. Increased N availability in grassland soils modiefies their microbial communities and decreases the abundance of arbuscular mycorrhizal fungi. Soil Biology & Biochemistry 38 (2006) 1583-1595
13. Bucher A.E., and Lanyon L.E. Evaluating soil management with microbial community-level physiological profiles. Applied Soil Ecology 29 (2005) 59-71
14. Caballero R., Alzueta C., Oritz L.T., Rodríguez M.L., Barro C., and Rebolé A. Carbohydrate and protein fractions of fresh and dried common vetch at three maturity stages. Agronomy Journal 93 (2001) 1006-1013
15. Carreiro M.M., Sinsabaugh R.L., Repert D.A., and Parkhurst D.F. Microbial enzyme shifts explain litter decay response to simulated nitrogen deposition. Ecology 81 (2000) 2365-2539
16. Clegg C.D. Impact of cattle grazing and inorganic fertiliser additions to managed grasslands on the microbial community composition of soils. Applied Soil Ecology 31 (2006) 73-82
17. Cox P., Wilkinson S.P., and Anderson J.M. Effects of fungal inocula on the decomposition of lignin and structural polysaccharides in Pinus sylvestris litter. Biology and Fertility of Soils 33 (2001) 246-251
18. Crawford D.L., and Crawford R.L. Microbial degradation of lignin. Enzyme Microbial Technology 2 (1980) 11-22
19. Fernandes L., Loguercio-Leite C., Esposito E., and Reis M.M. In vitro wood decay of Eucalyptus grandis by the basidiomycete fungus Phellinus flavomarginatus. International Biodeterioration & Biodegradation 55 (2005) 187-193
20. Fierer N., Bradford M.A., and Jackson R.B. Toward an ecological classification of soil bacteria. Ecology 88 (2007) 1354-1364
21. Fog K. The effect of added nitrogen on the rate of decomposition of organic matter. Biological Reviews 63 (1988) 433-462
22. Frostegård A., Tunlid A., and Bååth E. Microbial biomass measurement as total lipid phosphate in soils of different organic content. Journal of Microbiological Methods 14 (1991) 151-163
23. Frostegård A., Tunlid A., and Baath E. Phospholipid fatty acid composition, biomass and activity of microbial communities from two soil types experimentally exposed to different heavy metals. Applied and Environmental Microbiology 59 (1993) 3605-3617
24. Garrett S.D. Ecological groups of soil fungi: a survey of substrate relationships. New Phytologist 50 (1951) 149-166
25. Georgieva S., Christensen S., Petersen H., Gjelstrup P., and Thorup-Kristensen K. Early decomposer assemblages of soil organisms in litterbags with vetch and rye roots. Soil Biology & Biochemistry 37 (2005) 1145-1155
26. Graham J.H., Hodge N.C., and Morton J.B. Fatty acid methyl ester profiles for characterization of glomalean fungi and their endomycorrhizae. Applied and Environmental Microbiology 61 (1995) 58-64
27. Guckert J.B., Antworth C.P., Nichols P.D., and White D.C. Phospholipid, ester-linked fatty acid profiles as reproducible assays for changes in prokaryotic community structure of estuarine sediments. FEMS Microbiology Ecology 31 (1985) 147-158
28. Heal O.W., Anderson J.M., and Swift M.J. Plant litter quality and decomposition: an historical review. In: Cadisch G., and Giller K.E. (Eds). Driven by Nature: Plant Litter Quality and Decomposition (1997), CAB International, Wallingford 3-30
29. 15N in soil by solid-state nuclear magnetic resonance spectroscopy. European Journal of Soil Science 48 (1997) 623-631
30. Jones D.L., and Kielland K. Soil amino acid turnover dominates the nitrogen flux in permafrost-dominated taiga forest soils. Biology & Biochemistry 34 (2002) 209-219
31. Kaal E.E.J., Jong E., and Field J.A. Stimulation of ligninolytic peroxidase activity by nitrogen nutrients in the white rot fungus Bjerkandera sp. strain BOS55. Applied and Environmental Microbiology 59 (1993) 4031-4036
32. Keyser P., Kirk T.K., and Zeikus J.G. Ligninolytic enzyme system of Phanerochaete chrysosporium: synthesized in the absence of lignin in response to nitrogen starvation. Journal of Bacteriology 135 (1978) 790-797
33. Killham K. Soil Ecology (1994), Cambridge University Press 260 pp.
34. Kirschbaum M.U.F. The temperature dependence of soil organic matter decomposition, and the effect of global warming on soil organic C storage. Soil Biology and Biochemistry 27 (1995) 753-760
35. 15N NMR spectroscopy as a tool in soil organic matter studies. Geoderma 80 (1997) 243-270
36. Kögel-Knabner I. The macromolecular organic composition of plant and microbial residues as inputs to soil organic matter. Soil Biology & Biochemistry 34 (2002) 139-162
37. Kraus T.E.C., Zasoski R.J., Dahlgren R.A., Horwath W.R., and Preston C.M. Carbon and nitrogen dynamics in a forest soil amended with purified tannins from different plant species. Soil Biology & Biochemistry 36 (2004) 309-321
38. Ladd J.N., Amato M., Li-Kai Y., and Schultz J.E. Differential effects of rotation, plant residue and nitrogen fertilizer on microbial biomass and organic matter in an Australian alfisol. Soil Biology & Biochemistry 26 (1994) 821-831
39. Lemma B., Nilsson I., Kleja D.B., Olsson M., and Knicker H. Decomposition and substrate quality of leaf litters and fine roots from three exotic plantations and a native forest in the southwestern highlands of Ethiopia. Soil Biology & Biochemistry 39 (2007) 2317-2328
40. Leung P.-C., and Pointing S.B. Effect of different carbon and nitrogen regimes on Poly R decolorization by white-rot fungi. Mycological Research 106 (2002) 86-92
41. 13C NMR. Phytochemistry 35 (1994) 489-491
42. Marschner P., Kandeler E., and Marschner B. Structure and function of the soil microbial community in a long-term fertilizer experiment. Soil Biology & Biochemistry 35 (2003) 453-461
43. McMahon S.K., Williams M.A., Bottomley P.J., and Myrold D.D. Dynamics of microbial communities during decomposition of carbon-13 labeled ryegrass fractions in soil. Soil Science Society of America Journal 69 (2005) 1238-1247
44. Neely C.L., Beare M.H., Hargrove W.L., and Coleman D.C. Relationships between fungal and bacterial substrate-induced respiration, biomass and plant residue decomposition. Soil Biology & Biochemistry 23 (1991) 947-954
45. Osono T., Hirose D., and Fujimaki R. Fungal colonization as affected by litter depth and decomposition stage of needle litter. Soil Biology & Biochemistry 38 (2006) 2743-2752
46. Palm C.A., and Sanchez P.A. Decomposition and nutrient release patterns of the leaves of three tropical legumes. Biotropica 22 (1990) 330-338
47. Périé F.H., and Gold M.H. Manganese regulation of manganese peroxidase expression and lignin degradation by the white-rot fungus Dichomitus squalens. Applied and Environmental Microbiology 57 (1991) 2240-2245
48. Poll C., Marhan S., Ingwersen J., and Kandeler E. Dynamics of litter carbon turnover and microbial abundance in a rye detritusphere. Soil Biology & Biochemistry 40 (2008) 1306-1321
49. Preston C. Applications of NMR to soil organic matter analysis: history and prospects. Soil Science 161 (1996) 145-166
50. Randlett D.L., Zak D.R., Pregitzer K.S., and Curtis P.S. Elevated atmospheric carbon dioxide and leaf litter chemistry: influences on microbial respiration and net nitrogen mineralization. Soil Science Society of America Journal 60 (1996) 1571-1577
51. Romani A.M., Fischer H., Mille-Lindblom C., and Tranvik L.J. Interactions of bacteria and fungi on decomposing litter: differential extracellular enzyme activities. Ecology 87 (2006) 2559-2569
52. Stark C., Condron L.M., Stewart A., Di H.J., and O'Callaghan M. Influence of organic and mineral amendments on microbial soil properties and processes. Applied Soil Ecology 35 (2007) 79-93
53. Swift M.J., Heal O.W., and Anderson J.M. Decomposition in Terrestrial Ecosystems (1979), Blackwell Scientific Publications, Oxford 372 pp.
54. Thormann M.N., Currah R.S., and Bayley S.E. Succession of microfungal assemblages in decomposing peatland plants. Plant and Soil 250 (2003) 323-333
55. Tian G., Kang B.T., and Brussaard L. Biological effects of plant residues with contrasting chemical compositions under humid tropical conditions - decomposition and nutrient release. Soil Biology & Biochemistry 24 (1992) 1051-1060
56. Ullrey D.E., Robinson P.T., and Whetter P.A. Composition of preferred and rejected Eucalyptus browse offered to captive koalas, Phascolarctos cinereus (Marsupialia). Australian Journal of Zoology 29 (1981) 839-846
57. Valmaseda M., Martínez M.J., and Martínez A.T. Kinetics of wheat straw solid-state fermentation with Trametes versicolor and Pleurotus ostreatus - lignin and polysaccharide alteration and production of related enzymatic activities. Applied Microbiology and Technology 35 (1991) 817-823
58. Van Veen J.A., and Kuikman P.J. Soil structural aspects of decomposition of organic matter by micro-organisms. Biogeochemistry 11 (1990) 213-233
59. Wang W.J., Baldock J.A., Dalal R.C., and Moody P.W. Decomposition dynamics of plant materials in relation to nitrogen availability and biochemistry determined by NMR and wet-chemical analysis. Soil Biology & Biochemistry 36 (2004) 2045-2058
60. White L.M., Hartman G.P., and Bergman J.W. In vitro digestibility, crude protein, and phosphorus content of straw of winter wheat, spring wheat, barley, and oat cultivars in Eastern Montana. Agronomy Journal 73 (1981) 117-121
61. 13C-labeled clover and ryegrass residues into a residue-associated microbial community under field conditions. Soil Biology & Biochemistry 39 (2007) 819-822
62. Xu J.M., Tang C., and Chen Z.L. Chemical composition controls residue decomposition in soils differing in initial pH. Soil Biology & Biochemistry 38 (2006) 544-552
63. 2 and the composition and function of soil microbial communities. Ecological Applications 10 (2000) 47-59
64. Zech W., Senesi N., Guggenberger G., Kaiser K., Lehmann J., Miano T.M., Miltner A., and Schroth G. Factors controlling humification and mineralization of soil organic matter in the tropics. Geoderma 79 (1997) 117-161
65. Zelles L. Fatty acid pattern of phospholipids and lipopolysaccarides in the characterisation of microbial communities in soil: a review. Biology and Fertility of Soils 29 (1999) 111-129