Predicting soil quality indices with near infrared analysis in a wildfire chronosequence

Science of the Total Environment

Volumn 407, Issue 3, 2009, Pages 1200-1205

  Cécillon, Lauric ^a,b   Cassagne, Nathalie ^c   Czarnes, Sonia ^d   Gros, Raphaël ^e   Vennetier, Michel ^f   Brun, Jean Jacques ^a  

^a Cemagref   (France)

^b French Agency for Environment and Energy Management ADEME   (France)

^c French National Institute for Agriculture   (France)

^d University of Lyon   (France)

^e Institut Me diterrane en d Ecologie et de Pale oe cologie IMEP   (France)

^f UR EMAX   (France)

Author keywords

GISQ; NIRS; Soil biogenic structures; Soil health; Soil monitoring; Soil quality

Indexed keywords

BIOACTIVITY; BIOGEOCHEMISTRY; BIOLOGICAL MATERIALS; ECOSYSTEMS; FIRES; INFRARED DEVICES; LEAST SQUARES APPROXIMATIONS; ORGANIC COMPOUNDS; PRINCIPAL COMPONENT ANALYSIS; REGRESSION ANALYSIS; SOIL MECHANICS; SOILS; STRUCTURAL HEALTH MONITORING;

GISQ; NIRS; SOIL BIOGENIC STRUCTURES; SOIL HEALTH; SOIL MONITORING; SOIL QUALITY;

QUALITY CONTROL;

SOIL ORGANIC MATTER;

BIOACTIVITY; CHRONOSEQUENCE; EARTHWORM; ECOSYSTEM SERVICE; ENVIRONMENTAL DISTURBANCE; NEAR INFRARED; PERFORMANCE ASSESSMENT; PREDICTION; QUANTITATIVE ANALYSIS; SOIL ANALYSIS; SOIL ORGANIC MATTER; SOIL QUALITY; WILDFIRE;

ARTICLE; BIOLOGICAL ACTIVITY; CHRONOSEQUENCE; EARTHWORM; NEAR INFRARED SPECTROSCOPY; NUTRIENT SUPPLY; PARTIAL LEAST SQUARES REGRESSION; PRINCIPAL COMPONENT ANALYSIS; PRIORITY JOURNAL; SOIL QUALITY; WILDFIRE CHRONOSEQUENCE;

EID: 57149107792     PISSN: 00489697     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.scitotenv.2008.07.029     Document Type: Article

References (45)

1. Adam G., and Duncan H. Development of a sensitive and rapid method for the measurement of total microbial activity using fluorescein diacetate (fda) in a range of soils. Soil Biol Biochem 33 (2001) 943-951
2. Anderson J.P.E., and Domsch K.H. A physiological method for the quantitative measurement of microbial biomass in soils. Soil Biol Biochem 10 (1978) 215-221
3. Andrews S.S., Karlen D.L., and Cambardella C.A. The soil management assessment framework: a quantitative soil quality evaluation method. Soil Sci Soc Am J 68 (2004) 1945-1962
4. Awiti A.O., Walsh M.G., Shepherd K.D., and Kinyamario J. Soil condition classification using infrared spectroscopy: a proposition for assessment of soil condition along a tropical forest-cropland chronosequence. Geoderma 143 (2008) 73-84
5. Beare M.H., Neely C.L., Coleman D.C., and Hargrove W.L. A substrate-induced respiration (sir) method for measurement of fungal and bacterial biomass on plant residues. Soil Biol Biochem 22 (1990) 585-594
6. Breure A.M. Ecological soil monitoring and soil quality assessment. In: Doelman P., and Eijsackers H. (Eds). Vital Soil: Function, Value, and Properties. Dev Soil Sci 29 (2004), Elsevier 281-306
7. Brunet D., Barthès B.G., Chotte J.L., and Feller C. Determination of carbon and nitrogen contents in Alfisols, Oxisols and Ultisols from Africa and Brazil using NIRS analysis: effects of sample grinding and set heterogeneity. Geoderma 139 (2007) 106-117
8. Cécillon L., and Brun J.J. Near-infrared reflectance spectroscopy (NIRS): a practical tool for the assessment of soil carbon and nitrogen budget. In: Jandl R., and Olsson M. (Eds). COST Action 639: Greenhouse-gas Budget of Soils under Changing Climate and Land Use (BurnOut). Federal Research and Training Centre for Forests, Natural Hazards and Landscape, Vienna (2007) 103-110
9. Cécillon L., Cassagne N., Czarnes S., Gros R., and Brun J.J. Variable selection in near infrared spectra for the biological characterization of soil and earthworm casts. Soil Biol Biochem 40 (2008) 1975-1979
10. Chessel D., Dufour A.B., and Thioulouse J. The ade4 package - I: one-table methods. R News 4 (2004) 5-10
11. Chong I.G., and Jun C.H. Performance of some variable selection methods when multicollinearity is present. Chemometr Intell Lab Syst 78 (2005) 103-112
12. Cohen M.J., Dabral S., Graham W.D., Prenger J.P., and Debusk W.F. Evaluating ecological condition using soil biogeochemical parameters and near infrared reflectance spectra. Environ Monit Assess 116 (2006) 427-457
13. Deng S.P., and Tabatabai M.A. Cellulase activity of soils. Soil Biol Biochem 26 (1994) 1347-1354
14. Doran J.W., and Safley M. Defining and assessing soil health and sustainable productivity. In: Pankhurst C.E., Doube B.M., and Gupta V.V.S.R. (Eds). Biological Indicators of Soil Health (1997), CAB International 1-28
15. Foley W.J., McIlwee A., Lawler I.R., Aragones L., Woolnough A., and Berding N. Ecological applications of near-infrared spectroscopy - a tool for rapid, cost-effective prediction of the composition of plant and animal tissues and aspects of animal performance. Oecologia 116 (1998) 293-305
16. Gonzalez-Pérez J.A., Gonzalez-Vila F.J., Almendros G., and Knicker H. The effect of fire on soil organic matter - a review. Environ Int 30 (2004) 855-870
17. Haberern J. Viewpoint: a soil health index. J Soil Water Conserv 47 (1992) 6
18. Hedde M., Lavelle P., Joffre R., Jiménez J.J., and Decaëns T. Specific functional signature in soil macro-invertebrates biostructures. Funct Ecol 19 (2005) 785-793
19. IUSS Working Group WRB. World reference base for soil resources. World Soil Resources Reports No. 103 (2006), FAO, Rome 128 pp
20. Krom M.D. Spectrophotometric determination of ammonia: a study of a modified Berthelot reaction using salicylate and dichloroisocyanurate. Analyst 105 (1980) 305-316
21. Lavelle P., Decaëns T., Aubert M., Barot S., Blouin M., Bureau F., Margerie P., Mora P., and Rossi J.P. Soil invertebrates and ecosystem services. Eur J Soil Biol 42 (2006) S3-S15
22. Malley D.F., Martin P.D., and Ben-Dor E. Application in analysis of soils. In: Roberts C.A. (Ed). Near-infrared Spectroscopy in Agriculture. Agronomy Monograph 44. American Society of Agronomy, Crop Science Society of America, Soil Science Society of America (2004) 729-784
23. Mevik B.H., and Wehrens R. The pls package: principal component and partial least squares regression in R. J Stat Softw 18 2 (2007) 1-24
24. Morvan X., Saby N.P.A., Arrouays D., Le Bas C., Jones R.J.A., Verheijen F.G.A., Bellamy P.H., Stephens M., and Kibblewhite M.G. Soil monitoring in Europe: a review of existing systems and requirements for harmonisation. Sci Total Environ 391 (2008) 1-12
25. NF ISO 10390. Soil quality, determination of pH. AFNOR (2005) 7 pp
26. NF ISO 10694. Qualité du sol, dosage du carbone organique et du carbone total après combustion sèche (analyse élémentaire). AFNOR (1995) 7 pp
27. NF ISO 13878. Soil quality, determination of total nitrogen content by dry combustion ("elemental analysis"). AFNOR (1998) 5 pp
28. + extractibles par l'acétate d'ammonium, méthode par agitation. AFNOR (2002) 8 pp
29. NF X 31-130. Qualité des sols, méthodes chimiques, détermination de la capacité d'échange cationique (CEC) et des cations extractibles. AFNOR (1999) 15 pp
30. Pietikäinen J., and Fritze H. Clear-cutting and prescribed burning in coniferous forest: comparison of effects on soil fungal and total microbial biomass, respiration activity and nitrification. Soil Biol Biochem 27 (1995) 101-109
31. R Development Core Team. R:A Language and Environment for Statistical Computing. R Foundation for Statistical Computing (2007) Vienna, Austria
32. Rundel P.W. Fire as an ecological factor. In: Lange, O.L., Nobel, P.S., Osmond, C.B., Ziegler, H., editors. Physiological plant ecology I (1981), Springer-Verlag, New York, USA 501-538
33. Shepherd K.D., and Walsh M.G. Review: Infrared spectroscopy-enabling an evidence-based diagnostic surveillance approach to agricultural and environmental management in developing countries. J Near Infrared Spectrosc 15 (2007) 1-19
34. Smith M.S., and Tiedje J.M. Phases of denitrification following oxygen depletion in soil. Soil Biol Biochem 11 (1979) 261-267
35. Sojka R.E., and Upchurch D.R. Reservations regarding the soil quality concept. Soil Sci Soc Am J 63 (1999) 1039-1054
36. Stevens A., van Wesemael B., Bartholomeus H., Rosillon D., Tychon B., and Ben-Dor E. Laboratory, field and airborne spectroscopy for monitoring organic carbon content in agricultural soils. Geoderma 144 (2008) 395-404
37. Tenenhaus M. La régression PLS (1998), Editions Technip, Paris 254 pp
38. Tiedje J.M., Simkins S., and Groffman P.M. Perspectives on measurement of denitrification in the field including recommended protocols for acetylene based methods. Plant Soil 115 (1989) 261-284
39. Vågen T.-G., Shepherd K.D., and Walsh M.G. Sensing landscape level change in soil quality following deforestation and conversion in the highlands of Madagascar using Vis-NIR spectroscopy. Geoderma 133 (2006) 281-294
40. Velasquez E., Lavelle P., Barrios E., Joffre R., and Reversat F. Evaluating soil quality in tropical agroecosystems of Colombia using NIRS. Soil Biol Biochem 37 (2005) 889-898
41. Velasquez E., Lavelle P., and Andrade M. GISQ, a multifunctional indicator of soil quality. Soil Biol Biochem 39 (2007) 3066-3080
42. Williams P.C. What does the raw material have to say. NIR News 5 (1993) 13
43. Wold S., Johansson E., and Cocchi M. PLS - partial least-squares projections to latent structures. In: Kubinyi H. (Ed). 3D QSAR in drug design; theory, methods and applications (1993), ESCOM Science Publishers, Leiden, Holland 523-550
44. Yoshinari T., Hynes R., and Knowles R. Acetylene inhibition of nitrous oxide reduction and measurement of denitrification and nitrogen fixation in soil. Soil Biol Biochem 9 (1977) 177-183
45. Zornoza R., Mataix-Solera J., Guerrero C., Arcenegui V., García-Orenes F., Mataix-Beneyto J., and Morugán A. Evaluation of soil quality using multiple linear regression based on physical, chemical and biochemical properties. Sci Total Environ 378 (2007) 233-237