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Volumn 5, Issue 10, 2010, Pages

Genetic admixture and population substructure in Guanacaste Costa Rica

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CLUSTER ANALYSIS; CONTROLLED STUDY; COSTA RICA; FALSE POSITIVE RESULT; FEMALE; GENE LINKAGE DISEQUILIBRIUM; GENETIC ANALYSIS; GENETIC DISTANCE; GENOTYPE; GEOGRAPHIC DISTRIBUTION; HETEROZYGOSITY; HUMAN; POPULATION GENETICS; POPULATION STRUCTURE; PRINCIPAL COMPONENT ANALYSIS; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 78149438449     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0013336     Document Type: Article
Times cited : (17)

References (32)
  • 1
    • 77949897520 scopus 로고    scopus 로고
    • Genetic structure of a unique admixed population: Implications for medical research
    • Patterson N, Petersen DC, Ross RE, Sudoyo H, Glashoff RH, et al. (2010) Genetic structure of a unique admixed population: implications for medical research. Hum Mol Genet 19(3): 411-9.
    • (2010) Hum Mol Genet , vol.19 , Issue.3 , pp. 411-419
    • Patterson, N.1    Petersen, D.C.2    Ross, R.E.3    Sudoyo, H.4    Glashoff, R.H.5
  • 2
    • 17144403675 scopus 로고    scopus 로고
    • Relation of type 2 diabetes to individual admixture and candidate gene polymorphisms in the HispanicAmerican population of San Luis Valley, Colorado
    • Parra EJ, Hoggart CJ, Bonilla C, Dios S, Norris JM, et al. (2004) Relation of type 2 diabetes to individual admixture and candidate gene polymorphisms in the HispanicAmerican population of San Luis Valley, Colorado. J Med Genet 41: e116.
    • (2004) J Med Genet , vol.41
    • Parra, E.J.1    Hoggart, C.J.2    Bonilla, C.3    Dios, S.4    Norris, J.M.5
  • 3
    • 13944250687 scopus 로고    scopus 로고
    • Admixture mapping for hypertension loci with genome-scan markers
    • Zhu X, Luke A, Copper RS, Quertermous T, Hanis C, et al. (2005) Admixture mapping for hypertension loci with genome-scan markers. Nat Genet 37: 177-181.
    • (2005) Nat Genet , vol.37 , pp. 177-181
    • Zhu, X.1    Luke, A.2    Copper, R.S.3    Quertermous, T.4    Hanis, C.5
  • 4
    • 33749003979 scopus 로고    scopus 로고
    • Admixture mapping identifies 8q24 as a prostate cancer risk locus in African-American men
    • Freedman ML, Haiman CA, Patterson N, McDonald GJ, Tandon A, et al. (2006) Admixture mapping identifies 8q24 as a prostate cancer risk locus in African-American men. Proc Natl Acad Sci USA 103: 14068-14073.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 14068-14073
    • Freedman, M.L.1    Haiman, C.A.2    Patterson, N.3    McDonald, G.J.4    Tandon, A.5
  • 5
  • 6
    • 21044439425 scopus 로고    scopus 로고
    • Is the Central Valley of Costa Rica a genetic isolate?
    • Morera B, Barrantes R (2004) Is the Central Valley of Costa Rica a genetic isolate? Rev Biol Trop 52(3): 629-644.
    • (2004) Rev Biol Trop , vol.52 , Issue.3 , pp. 629-644
    • Morera, B.1    Barrantes, R.2
  • 7
    • 77952504856 scopus 로고    scopus 로고
    • Common genetic variants and risk for HPV persistence and progression to cervical cancer
    • Wang SS, Gonzalez P, Yu K, Porras C, Li Q, et al. (2010) Common genetic variants and risk for HPV persistence and progression to cervical cancer. PLoS One 5(1): e8667.
    • (2010) PLoS One , vol.5 , Issue.1
    • Wang, S.S.1    Gonzalez, P.2    Yu, K.3    Porras, C.4    Li, Q.5
  • 8
    • 33750964482 scopus 로고    scopus 로고
    • African human diversity, origins and migrations
    • Reed FA, Tishkoff SA (2006) African human diversity, origins and migrations. Curr Opin Genet Dev 16: 597-605.
    • (2006) Curr Opin Genet Dev , vol.16 , pp. 597-605
    • Reed, F.A.1    Tishkoff, S.A.2
  • 9
    • 21244479740 scopus 로고    scopus 로고
    • Detecting the number of clusters of individuals using the software STRUCTURE: A simulation study
    • Evanno G, Regnaut S,Goudet J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol 14: 2611-2620.
    • (2005) Mol Ecol , vol.14 , pp. 2611-2620
    • Evanno, G.1    Regnaut, S.2    Goudet, J.3
  • 10
    • 33751562397 scopus 로고
    • Black and part-Black populations in colonial Costa Rica: Ethnohistorical resources and problems
    • Olien M (1980) Black and part-Black populations in colonial Costa Rica: Ethnohistorical resources and problems. Ethnohistory 27: 13-29.
    • (1980) Ethnohistory , vol.27 , pp. 13-29
    • Olien, M.1
  • 11
    • 73349108482 scopus 로고    scopus 로고
    • A Genealogical Interpretation of Principal Components Analysis
    • McVean G (2009) A Genealogical Interpretation of Principal Components Analysis. PLoS Genet 5(10): e1000686.
    • (2009) PLoS Genet , vol.5 , Issue.10
    • McVean, G.1
  • 12
    • 0035163561 scopus 로고    scopus 로고
    • Population structure in admixed populations: Effect of admixture dynamics on the pattern of linkage disequilibrium
    • Pfaff CL, Parra EJ, Bonilla C, Hiester K, McKeigue PM, et al. (2001) Population structure in admixed populations: effect of admixture dynamics on the pattern of linkage disequilibrium. Am J Hum Genet 68: 198-207.
    • (2001) Am J Hum Genet , vol.68 , pp. 198-207
    • Pfaff, C.L.1    Parra, E.J.2    Bonilla, C.3    Hiester, K.4    McKeigue, P.M.5
  • 14
    • 36749084053 scopus 로고    scopus 로고
    • A genomewide association study of skin pigmentation in a South Asian population
    • Stokowski RP, Pant PV, Dadd T, Fereday A, Hinds DA, et al. (2007) A genomewide association study of skin pigmentation in a South Asian population. Am J Hum Genet 81(6): 1119-1132.
    • (2007) Am J Hum Genet , vol.81 , Issue.6 , pp. 1119-1132
    • Stokowski, R.P.1    Pant, P.V.2    Dadd, T.3    Fereday, A.4    Hinds, D.A.5
  • 15
    • 29144485743 scopus 로고    scopus 로고
    • SLC24A5, a putative cation exchanger, affects pigmentation in zebrafish and humans
    • Lamason RL, Mohideen MA, Mest JR, Wong AC, Norton HL, et al. (2005) SLC24A5, a putative cation exchanger, affects pigmentation in zebrafish and humans. Science 310(5755): 1782-1786.
    • (2005) Science , vol.310 , Issue.5755 , pp. 1782-1786
    • Lamason, R.L.1    Mohideen, M.A.2    Mest, J.R.3    Wong, A.C.4    Norton, H.L.5
  • 16
    • 13444269543 scopus 로고    scopus 로고
    • Haploview: Analysis and visualization of LD and haplotype maps
    • Barrett JC, Fry B, Maller J, Daly MJ (2005) Haploview: analysis and visualization of LD and haplotype maps. Bioinformatics 21(2): 263-265.
    • (2005) Bioinformatics , vol.21 , Issue.2 , pp. 263-265
    • Barrett, J.C.1    Fry, B.2    Maller, J.3    Daly, M.J.4
  • 17
    • 41949133594 scopus 로고    scopus 로고
    • Geographic patterns of genome admixture in Latin American Mestizos
    • Wang S, Ray N, Rojas W, Parra MV, Bedoya G, et al. (2008) Geographic patterns of genome admixture in Latin American Mestizos. PLoS Genet 4(3): e1000037.
    • (2008) PLoS Genet , vol.4 , Issue.3
    • Wang, S.1    Ray, N.2    Rojas, W.3    Parra, M.V.4    Bedoya, G.5
  • 18
    • 33745460778 scopus 로고    scopus 로고
    • The use of mitochondrial DNA to discover pre- Columbian migrations to the Caribbean: Results for Puerto Rico and expectations for the Dominican Republic
    • [On-line Journal], Special Issue, Lynne Guitar, Ed
    • Martínez Cruzado JC (2002) The use of mitochondrial DNA to discover pre- Columbian migrations to the Caribbean: results for Puerto Rico and expectations for the Dominican Republic. KACIKE: The Journal of Caribbean Amerindian History and Anthropology [On-line Journal], Special Issue, Lynne Guitar, Ed.
    • (2002) KACIKE: The Journal of Caribbean Amerindian History and Anthropology
    • Martínez Cruzado, J.C.1
  • 19
    • 0038143616 scopus 로고    scopus 로고
    • Genetic demography of Antioquia (Colombia) and the Central Valley of Costa Rica
    • Carvajal-Carmona LG, Ophoff R, Service S, Hartiala J, Molina J, et al. (2003) Genetic demography of Antioquia (Colombia) and the Central Valley of Costa Rica. Hum Genet 112: 534-541.
    • (2003) Hum Genet , vol.112 , pp. 534-541
    • Carvajal-Carmona, L.G.1    Ophoff, R.2    Service, S.3    Hartiala, J.4    Molina, J.5
  • 20
    • 0346728470 scopus 로고    scopus 로고
    • The X chromosome in population genetics
    • Schaffner SF (2004) The X chromosome in population genetics. Nat Rev Genet 5: 43-51.
    • (2004) Nat Rev Genet , vol.5 , pp. 43-51
    • Schaffner, S.F.1
  • 21
    • 73149121163 scopus 로고    scopus 로고
    • Highly punctuated patterns of population structure on the X chromosome and implications for African evolutionary history
    • Lambert CA, Connelly CF, Madeoy J, Qiu R, Olson MV, et al. (2010) Highly punctuated patterns of population structure on the X chromosome and implications for African evolutionary history. Am J Hum Genet 86(1): 34-44.
    • (2010) Am J Hum Genet , vol.86 , Issue.1 , pp. 34-44
    • Lambert, C.A.1    Connelly, C.F.2    Madeoy, J.3    Qiu, R.4    Olson, M.V.5
  • 22
    • 0034654151 scopus 로고    scopus 로고
    • Population-based study of human papillomavirus infection and cervical neoplasia in rural Costa Rica
    • Herrero R, Hildesheim A, Bratti C, Sherman ME, Hutchinson M, et al. (2000) Population-based study of human papillomavirus infection and cervical neoplasia in rural Costa Rica. J Natl Cancer Inst 92: 464-474.
    • (2000) J Natl Cancer Inst , vol.92 , pp. 464-474
    • Herrero, R.1    Hildesheim, A.2    Bratti, C.3    Sherman, M.E.4    Hutchinson, M.5
  • 23
    • 0030850686 scopus 로고    scopus 로고
    • Design and methods of a population-based natural history study of cervical neoplasia in a rural province of Costa Rica: The Guanacaste Project
    • Herrero R, Schiffman MH, Bratti C, Hildesheim A, Balmaceda I, et al. (1997) Design and methods of a population-based natural history study of cervical neoplasia in a rural province of Costa Rica: the Guanacaste Project. Rev Panam Salud Publica 1: 362-375.
    • (1997) Rev Panam Salud Publica , vol.1 , pp. 362-375
    • Herrero, R.1    Schiffman, M.H.2    Bratti, C.3    Hildesheim, A.4    Balmaceda, I.5
  • 24
    • 0033912689 scopus 로고    scopus 로고
    • Statistical tests for detection of misspecified relationships by use of genome-screen data
    • McPeek MS, Sun L (2000) Statistical tests for detection of misspecified relationships by use of genome-screen data. Am J Hum Genet 66: 1076-1094.
    • (2000) Am J Hum Genet , vol.66 , pp. 1076-1094
    • McPeek, M.S.1    Sun, L.2
  • 25
    • 49749122987 scopus 로고    scopus 로고
    • Population substructure and control selection in genome-wide association studies
    • Yu K, Wang Z, Li Q, Wacholder S, Hunter DJ, et al. (2008) Population substructure and control selection in genome-wide association studies. PLoS One 3(7): e2551.
    • (2008) PLoS One , vol.3 , Issue.7
    • Yu, K.1    Wang, Z.2    Li, Q.3    Wacholder, S.4    Hunter, D.J.5
  • 26
    • 0041817568 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies
    • Falush D, Stephens M, Pritchard JK (2003) Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 164: 1567-1587.
    • (2003) Genetics , vol.164 , pp. 1567-1587
    • Falush, D.1    Stephens, M.2    Pritchard, J.K.3
  • 27
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155: 945-959.
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 29
    • 34547861256 scopus 로고    scopus 로고
    • CLUMPP: A cluster matching and permutation program dealing with label switching and multimodality in analysis of population structure
    • Jakobsson M, Rosenberg NA (2007) CLUMPP: a cluster matching and permutation program dealing with label switching and multimodality in analysis of population structure. Bioinformatics 23(14): 1801-1806.
    • (2007) Bioinformatics , vol.23 , Issue.14 , pp. 1801-1806
    • Jakobsson, M.1    Rosenberg, N.A.2
  • 30
    • 1342331102 scopus 로고    scopus 로고
    • Distruct: A program for the graphical display of population structure
    • Rosenberg NA (2004) Distruct: a program for the graphical display of population structure. Mol Ecol Notes 4: 137-138.
    • (2004) Mol Ecol Notes , vol.4 , pp. 137-138
    • Rosenberg, N.A.1
  • 31
    • 33846006923 scopus 로고    scopus 로고
    • Population structure and eigenanalysis
    • Patterson N, Price AL, Reich D (2006) Population structure and eigenanalysis. PLoS Genet 2(12): e190.
    • (2006) PLoS Genet , vol.2 , Issue.12
    • Patterson, N.1    Price, A.L.2    Reich, D.3
  • 32
    • 33746512512 scopus 로고    scopus 로고
    • Principal components analysis corrects for stratification in genome-wide association studies
    • Price AL, Patterson NJ, Plenge RM, Weinblatt ME, Shadick NA, et al. (2006) Principal components analysis corrects for stratification in genome-wide association studies. Nat Genet 38: 904-909.
    • (2006) Nat Genet , vol.38 , pp. 904-909
    • Price, A.L.1    Patterson, N.J.2    Plenge, R.M.3    Weinblatt, M.E.4    Shadick, N.A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.