SCOPUS 정보 검색 플랫폼

Molecular BioSystems

Volumn 6, Issue 12, 2010, Pages 2439-2447

Guanine quadruplex DNA structure restricts methylation of CpG dinucleotides genome-wide

(6) Halder, Rashi a Halder, Kangkan a Sharma, Priyanka a Garg, Gaurav a Sengupta, Shantanu a Chowdhury, Shantanu a

a CSIR INSTITUTE OF GENOMICS AND INTEGRATIVE BIOLOGY (India)

Author keywords

[No Author keywords available]

Indexed keywords

CYTIDYLYL 3' 5' GUANOSINE; CYTIDYLYL-3'-5'-GUANOSINE; DINUCLEOSIDE PHOSPHATE; GUANINE QUADRUPLEX; SPACER DNA;

ARTICLE; DNA METHYLATION; EMBRYONIC STEM CELL; EXON; GENETICS; HUMAN; HUMAN GENOME; INTRON; METABOLISM; NUCLEOTIDE SEQUENCE; PROMOTER REGION; REPRODUCIBILITY;

BASE SEQUENCE; DINUCLEOSIDE PHOSPHATES; DNA METHYLATION; DNA, INTERGENIC; EMBRYONIC STEM CELLS; EXONS; G-QUADRUPLEXES; GENOME, HUMAN; HUMANS; INTRONS; PROMOTER REGIONS, GENETIC; REPRODUCIBILITY OF RESULTS;

MAMMALIA;

EID: 78149435311 PISSN: 1742206X EISSN: 17422051 Source Type: Journal
DOI: 10.1039/c0mb00009d Document Type: Article

Times cited : (62)

References (55)

1
- 0035228079
- P. Avner E. Heard Nat. Rev. Genet. 2001 2 59 67
- (2001) Nat. Rev. Genet. , vol.2 , pp. 59-67
- Avner, P.¹ Heard, E.²

2
- 0035234557
- W. Reik J. Walter Nat. Rev. Genet. 2001 2 21 32
- (2001) Nat. Rev. Genet. , vol.2 , pp. 21-32
- Reik, W.¹ Walter, J.²

3
- 0036144048
- A. Bird Genes Dev. 2002 16 6 21
- (2002) Genes Dev. , vol.16 , pp. 6-21
- Bird, A.¹

4
- 0029126403
- A. Razin R. Shemer Hum. Mol. Genet. 1995 4 1751 1755
- (1995) Hum. Mol. Genet. , vol.4 , pp. 1751-1755
- Razin, A.¹ Shemer, R.²

5
- 78149461003
- D. H. K. Lim E. R. Maher The Obstetrician & Gynaecologist 2010 12 37 42
- (2010) The Obstetrician & Gynaecologist , vol.12 , pp. 37-42
- Lim, D.H.K.¹ Maher, E.R.²

6
- 0037133565
- D. Takai P. A. Jones Proc. Natl. Acad. Sci. U. S. A. 2002 99 3740 3745
- (2002) Proc. Natl. Acad. Sci. U. S. A. , vol.99 , pp. 3740-3745
- Takai, D.¹ Jones, P.A.²

7
- 31944432339
- S. Saxonov P. Berg D. L. Brutlag Proc. Natl. Acad. Sci. U. S. A. 2006 103 1412 1417
- (2006) Proc. Natl. Acad. Sci. U. S. A. , vol.103 , pp. 1412-1417
- Saxonov, S.¹ Berg, P.² Brutlag, D.L.³

8
- 0036274359
- P. A. Jones S. B. Baylin Nat. Rev. Genet. 2002 3 415 428
- (2002) Nat. Rev. Genet. , vol.3 , pp. 415-428
- Jones, P.A.¹ Baylin, S.B.²

9
- 0142216237
- M. Teitell B. Richardson Clin. Immunol. 2003 109 2 5
- (2003) Clin. Immunol. , vol.109 , pp. 2-5
- Teitell, M.¹ Richardson, B.²

10
- 0034614637
- D. Hanahan R. A. Weinberg Cell 2000 100 57 70
- (2000) Cell , vol.100 , pp. 57-70
- Hanahan, D.¹ Weinberg, R.A.²

11
- 24744471011
- M. J. Hoffmann W. A. Schulz Biochem. Cell Biol. 2005 83 296 321
- (2005) Biochem. Cell Biol. , vol.83 , pp. 296-321
- Hoffmann, M.J.¹ Schulz, W.A.²

12
- 0033753779
- T. H. Bestor Hum. Mol. Genet. 2000 9 2395 2402
- (2000) Hum. Mol. Genet. , vol.9 , pp. 2395-2402
- Bestor, T.H.¹

13
- 0033579311
- A. Bird Science 1999 286 2287 2288
- (1999) Science , vol.286 , pp. 2287-2288
- Bird, A.¹

14
- 33646120548
- F. A. Feltus E. K. Lee J. F. Costello C. Plass P. M. Vertino Genomics 2006 87 572 579
- (2006) Genomics , vol.87 , pp. 572-579
- Feltus, F.A.¹ Lee, E.K.² Costello, J.F.³ Plass, C.⁴ Vertino, P.M.⁵

15
- 33645777446
- C. Bock M. Paulsen S. Tierling T. Mikeska T. Lengauer J. Walter PLoS Genet. 2006 2 e26
- (2006) PLoS Genet. , vol.2 , pp. 26
- Bock, C.¹ Paulsen, M.² Tierling, S.³ Mikeska, T.⁴ Lengauer, T.⁵ Walter, J.⁶

16
- 0026008102
- S. S. Smith J. L. Kan D. J. Baker B. E. Kaplan P. Dembek J. Mol. Biol. 1991 217 39 51
- (1991) J. Mol. Biol. , vol.217 , pp. 39-51
- Smith, S.S.¹ Kan, J.L.² Baker, D.J.³ Kaplan, B.E.⁴ Dembek, P.⁵

17
- 0028148342
- S. S. Smith A. Laayoun R. G. Lingeman D. J. Baker J. Riley J. Mol. Biol. 1994 243 143 151
- (1994) J. Mol. Biol. , vol.243 , pp. 143-151
- Smith, S.S.¹ Laayoun, A.² Lingeman, R.G.³ Baker, D.J.⁴ Riley, J.⁵

18
- 0031917564
- X. Chen S. V. Mariappan R. K. Moyzis E. M. Bradbury G. Gupta J Biomol. Struct. Dyn. 1998 15 745 756
- (1998) J Biomol. Struct. Dyn. , vol.15 , pp. 745-756
- Chen, X.¹ Mariappan, S.V.² Moyzis, R.K.³ Bradbury, E.M.⁴ Gupta, G.⁵

19
- 0031004279
- M. N. Weitzmann K. J. Woodford K. Usdin J. Biol. Chem. 1997 272 9517 9523
- (1997) J. Biol. Chem. , vol.272 , pp. 9517-9523
- Weitzmann, M.N.¹ Woodford, K.J.² Usdin, K.³

20
- 0037142071
- G. N. Parkinson M. P. Lee S. Neidle Nature 2002 417 876 880
- (2002) Nature , vol.417 , pp. 876-880
- Parkinson, G.N.¹ Lee, M.P.² Neidle, S.³

21
- 0023868393
- A. J. Jeffreys N. J. Royle V. Wilson Z. Wong Nature 1988 332 278 281
- (1988) Nature , vol.332 , pp. 278-281
- Jeffreys, A.J.¹ Royle, N.J.² Wilson, V.³ Wong, Z.⁴

22
- 0033034413
- L. A. Hanakahi H. Sun N. Maizels J. Biol. Chem. 1999 274 15908 15912
- (1999) J. Biol. Chem. , vol.274 , pp. 15908-15912
- Hanakahi, L.A.¹ Sun, H.² Maizels, N.³

23
- 0027190015
- W. Dunnick G. Z. Hertz L. Scappino C. Gritzmacher Nucleic Acids Res. 1993 21 365 372
- (1993) Nucleic Acids Res. , vol.21 , pp. 365-372
- Dunnick, W.¹ Hertz, G.Z.² Scappino, L.³ Gritzmacher, C.⁴

24
- 33745121203
- P. Rawal V. B. Kummarasetti J. Ravindran N. Kumar K. Halder R. Sharma M. Mukerji S. K. Das S. Chowdhury Genome Res. 2006 16 644 655
- (2006) Genome Res. , vol.16 , pp. 644-655
- Rawal, P.¹ Kummarasetti, V.B.² Ravindran, J.³ Kumar, N.⁴ Halder, K.⁵ Sharma, R.⁶ Mukerji, M.⁷ Das, S.K.⁸ Chowdhury, S.⁹

25
- 33846928449
- J. L. Huppert S. Balasubramanian Nucleic Acids Res. 2007 35 406 413
- (2007) Nucleic Acids Res. , vol.35 , pp. 406-413
- Huppert, J.L.¹ Balasubramanian, S.²

26
- 38549092075
- V. K. Yadav J. K. Abraham P. Mani R. Kulshrestha S. Chowdhury Nucleic Acids Res. 2008 36 D381 D385
- (2008) Nucleic Acids Res. , vol.36
- Yadav, V.K.¹ Abraham, J.K.² Mani, P.³ Kulshrestha, R.⁴ Chowdhury, S.⁵

27
- 52449093394
- A. Verma K. Halder R. Halder V. K. Yadav P. Rawal R. K. Thakur F. Mohd A. Sharma S. Chowdhury J. Med. Chem. 2008 51 5641 5649
- (2008) J. Med. Chem. , vol.51 , pp. 5641-5649
- Verma, A.¹ Halder, K.² Halder, R.³ Yadav, V.K.⁴ Rawal, P.⁵ Thakur, R.K.⁶ Mohd, F.⁷ Sharma, A.⁸ Chowdhury, S.⁹

28
- 84887212593
- P. Mani V. K. Yadav S. K. Das S. Chowdhury PLoS One 2009 4 e4399
- (2009) PLoS One , vol.4 , pp. 4399
- Mani, P.¹ Yadav, V.K.² Das, S.K.³ Chowdhury, S.⁴

29
- 71749095786
- W. Shen L. Gao M. Balakrishnan R. A. Bambara J. Biol. Chem. 2009 284 33883 33893
- (2009) J. Biol. Chem. , vol.284 , pp. 33883-33893
- Shen, W.¹ Gao, L.² Balakrishnan, M.³ Bambara, R.A.⁴

30
- 72949109535
- K. Halder R. Halder S. Chowdhury Mol. BioSyst. 2009 5 1703 1712
- (2009) Mol. BioSyst. , vol.5 , pp. 1703-1712
- Halder, K.¹ Halder, R.² Chowdhury, S.³

31
- 72949086633
- H. M. Wong J. L. Huppert Mol. BioSyst. 2009 5 1713 1719
- (2009) Mol. BioSyst. , vol.5 , pp. 1713-1719
- Wong, H.M.¹ Huppert, J.L.²

32
- 0032030327
- T. Simonsson P. Pecinka M. Kubista Nucleic Acids Res. 1998 26 1167 1172
- (1998) Nucleic Acids Res. , vol.26 , pp. 1167-1172
- Simonsson, T.¹ Pecinka, P.² Kubista, M.³

33
- 0037015078
- A. Siddiqui-Jain C. L. Grand D. J. Bearss L. H. Hurley Proc. Natl. Acad. Sci. U. S. A. 2002 99 11593 11598
- (2002) Proc. Natl. Acad. Sci. U. S. A. , vol.99 , pp. 11593-11598
- Siddiqui-Jain, A.¹ Grand, C.L.² Bearss, D.J.³ Hurley, L.H.⁴

34
- 23044485047
- S. Rankin A. P. Reszka J. Huppert M. Zloh G. N. Parkinson A. K. Todd S. Ladame S. Balasubramanian S. Neidle J. Am. Chem. Soc. 2005 127 10584 10589
- (2005) J. Am. Chem. Soc. , vol.127 , pp. 10584-10589
- Rankin, S.¹ Reszka, A.P.² Huppert, J.³ Zloh, M.⁴ Parkinson, G.N.⁵ Todd, A.K.⁶ Ladame, S.⁷ Balasubramanian, S.⁸ Neidle, S.⁹

35
- 38049017592
- Y. Qin E. M. Rezler V. Gokhale D. Sun L. H. Hurley Nucleic Acids Res. 2007 35 7698 7713
- (2007) Nucleic Acids Res. , vol.35 , pp. 7698-7713
- Qin, Y.¹ Rezler, E.M.² Gokhale, V.³ Sun, D.⁴ Hurley, L.H.⁵

36
- 66249142691
- M. Paramasivam A. Membrino S. Cogoi H. Fukuda H. Nakagama L. E. Xodo Nucleic Acids Res. 2009 37 2841 2853
- (2009) Nucleic Acids Res. , vol.37 , pp. 2841-2853
- Paramasivam, M.¹ Membrino, A.² Cogoi, S.³ Fukuda, H.⁴ Nakagama, H.⁵ Xodo, L.E.⁶

37
- 0037059740
- D. Ma Z. Xing B. Liu N. G. Pedigo S. G. Zimmer Z. Bai E. H. Postel D. M. Kaetzel J. Biol. Chem. 2002 277 1560 1567
- (2002) J. Biol. Chem. , vol.277 , pp. 1560-1567
- Ma, D.¹ Xing, Z.² Liu, B.³ Pedigo, N.G.⁴ Zimmer, S.G.⁵ Bai, Z.⁶ Postel, E.H.⁷ Kaetzel, D.M.⁸

38
- 0029670040
- R. M. Howell K. J. Woodford M. N. Weitzmann K. Usdin J. Biol. Chem. 1996 271 5208 5214
- (1996) J. Biol. Chem. , vol.271 , pp. 5208-5214
- Howell, R.M.¹ Woodford, K.J.² Weitzmann, M.N.³ Usdin, K.⁴

39
- 33646462913
- T. S. Dexheimer D. Sun L. H. Hurley J. Am. Chem. Soc. 2006 128 5404 5415
- (2006) J. Am. Chem. Soc. , vol.128 , pp. 5404-5415
- Dexheimer, T.S.¹ Sun, D.² Hurley, L.H.³

40
- 33744472232
- S. Cogoi L. E. Xodo Nucleic Acids Res. 2006 34 2536 2549
- (2006) Nucleic Acids Res. , vol.34 , pp. 2536-2549
- Cogoi, S.¹ Xodo, L.E.²

41
- 58549096734
- R. K. Thakur P. Kumar K. Halder A. Verma A. Kar J. L. Parent R. Basundra A. Kumar S. Chowdhury Nucleic Acids Res. 2009 37 172 183
- (2009) Nucleic Acids Res. , vol.37 , pp. 172-183
- Thakur, R.K.¹ Kumar, P.² Halder, K.³ Verma, A.⁴ Kar, A.⁵ Parent, J.L.⁶ Basundra, R.⁷ Kumar, A.⁸ Chowdhury, S.⁹

42
- 67249138595
- A. Verma V. K. Yadav R. Basundra A. Kumar S. Chowdhury Nucleic Acids Res. 2009 37 4194 4204
- (2009) Nucleic Acids Res. , vol.37 , pp. 4194-4204
- Verma, A.¹ Yadav, V.K.² Basundra, R.³ Kumar, A.⁴ Chowdhury, S.⁵

43
- 39149144832
- Y. Mikami-Terao M. Akiyama Y. Yuza T. Yanagisawa O. Yamada H. Yamada Cancer Lett. 2008 261 226 234
- (2008) Cancer Lett. , vol.261 , pp. 226-234
- Mikami-Terao, Y.¹ Akiyama, M.² Yuza, Y.³ Yanagisawa, T.⁴ Yamada, O.⁵ Yamada, H.⁶

44
- 33646100776
- M. D. Huber M. L. Duquette J. C. Shiels N. Maizels J. Mol. Biol. 2006 358 1071 1080
- (2006) J. Mol. Biol. , vol.358 , pp. 1071-1080
- Huber, M.D.¹ Duquette, M.L.² Shiels, J.C.³ Maizels, N.⁴

45
- 0033534467
- L. A. Dempsey H. Sun L. A. Hanakahi N. Maizels J. Biol. Chem. 1999 274 1066 1071
- (1999) J. Biol. Chem. , vol.274 , pp. 1066-1071
- Dempsey, L.A.¹ Sun, H.² Hanakahi, L.A.³ Maizels, N.⁴

46
- 70450217879
- R. Lister M. Pelizzola R. H. Dowen R. D. Hawkins G. Hon J. Tonti-Filippini J. R. Nery L. Lee Z. Ye Q. M. Ngo L. Edsall B. Antosiewicz R. Stewart V. Ruotti A. H. Millar J. A. Thomson B. Ren J. R. Ecker Nature 2009 462 315 322
- (2009) Nature , vol.462 , pp. 315-322
- Lister, R.¹ Pelizzola, M.² Dowen, R.H.³ Hawkins, R.D.⁴ Hon, G.⁵ Tonti-Filippini, J.⁶ Nery, J.R.⁷ Lee, L.⁸ Ye, Z.⁹ Ngo, Q.M.¹⁰ Edsall, L.¹¹ Antosiewicz, B.¹² Stewart, R.¹³ Ruotti, V.¹⁴ Millar, A.H.¹⁵ Thomson, J.A.¹⁶ Ren, B.¹⁷ Ecker, J.R.¹⁸

47
- 33751505540
- F. Eckhardt J. Lewin R. Cortese V. K. Rakyan J. Attwood M. Burger J. Burton T. V. Cox R. Davies T. A. Down C. Haefliger R. Horton K. Howe D. K. Jackson J. Kunde C. Koenig J. Liddle D. Niblett T. Otto R. Pettett S. Seemann C. Thompson T. West J. Rogers A. Olek K. Berlin S. Beck Nat. Genet. 2006 38 1378 1385
- (2006) Nat. Genet. , vol.38 , pp. 1378-1385
- Eckhardt, F.¹ Lewin, J.² Cortese, R.³ Rakyan, V.K.⁴ Attwood, J.⁵ Burger, M.⁶ Burton, J.⁷ Cox, T.V.⁸ Davies, R.⁹ Down, T.A.¹⁰ Haefliger, C.¹¹ Horton, R.¹² Howe, K.¹³ Jackson, D.K.¹⁴ Kunde, J.¹⁵ Koenig, C.¹⁶ Liddle, J.¹⁷ Niblett, D.¹⁸ Otto, T.¹⁹ Pettett, R.²⁰ more..

48
- 42449109111
- K. Tsumagari L. Qi K. Jackson C. Shao M. Lacey J. Sowden R. Tawil V. Vedanarayanan M. Ehrlich Nucleic Acids Res. 2008 36 2196 2207
- (2008) Nucleic Acids Res. , vol.36 , pp. 2196-2207
- Tsumagari, K.¹ Qi, L.² Jackson, K.³ Shao, C.⁴ Lacey, M.⁵ Sowden, J.⁶ Tawil, R.⁷ Vedanarayanan, V.⁸ Ehrlich, M.⁹

49
- 70549099970
- T. A. Brooks L. H. Hurley Nat Rev Cancer 2009 9 849 861
- (2009) Nat Rev Cancer , vol.9 , pp. 849-861
- Brooks, T.A.¹ Hurley, L.H.²

50
- 77954659099
- R. K. Chodavarapu S. Feng Y. V. Bernatavichute P. Y. Chen H. Stroud Y. Yu J. A. Hetzel F. Kuo J. Kim S. J. Cokus D. Casero M. Bernal P. Huijser A. T. Clark U. Kramer S. S. Merchant X. Zhang S. E. Jacobsen M. Pellegrini Nature 2010 466 388 392
- (2010) Nature , vol.466 , pp. 388-392
- Chodavarapu, R.K.¹ Feng, S.² Bernatavichute, Y.V.³ Chen, P.Y.⁴ Stroud, H.⁵ Yu, Y.⁶ Hetzel, J.A.⁷ Kuo, F.⁸ Kim, J.⁹ Cokus, S.J.¹⁰ Casero, D.¹¹ Bernal, M.¹² Huijser, P.¹³ Clark, A.T.¹⁴ Kramer, U.¹⁵ Merchant, S.S.¹⁶ Zhang, X.¹⁷ Jacobsen, S.E.¹⁸ Pellegrini, M.¹⁹

51
- 0027467617
- R. F. Macaya P. Schultze F. W. Smith J. A. Roe J. Feigon Proc. Natl. Acad. Sci. U. S. A. 1993 90 3745 3749
- (1993) Proc. Natl. Acad. Sci. U. S. A. , vol.90 , pp. 3745-3749
- MacAya, R.F.¹ Schultze, P.² Smith, F.W.³ Roe, J.A.⁴ Feigon, J.⁵

52
- 33644858313
- Y. Xu H. Sugiyama Nucleic Acids Res. 2006 34 949 954
- (2006) Nucleic Acids Res. , vol.34 , pp. 949-954
- Xu, Y.¹ Sugiyama, H.²

53
- 77957260077
- 10.1111/j.1742-4658.2010.07814.x
- R. Basundra A. Kumar Amrane Samir A. Verma A. T. Phan S. Chowdhury FEBS Journal 10.1111/j.1742-4658.2010.07814.x
- FEBS Journal
- Basundra, R.¹ Kumar, A.² Amrane, S.³ Verma, A.⁴ Phan, A.T.⁵ Chowdhury, S.⁶

54
- 0030898057
- Y. Fang Y. Wei C. Bai Y. Tang S. B. Lin L. S. Kan J. Biomol. Struct. Dyn. 1997 14 485 493
- (1997) J. Biomol. Struct. Dyn. , vol.14 , pp. 485-493
- Fang, Y.¹ Wei, Y.² Bai, C.³ Tang, Y.⁴ Lin, S.B.⁵ Kan, L.S.⁶

55
- 0026093154
- A. Randa-Anzaldo Med. Hypotheses 1991 34 81 87
- (1991) Med. Hypotheses , vol.34 , pp. 81-87
- Randa-Anzaldo, A.¹

* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.