Predicted sub-populations in a marine shrimp proteome as revealed by combined EST and cDNA data from multiple Penaeus species

BMC Research Notes

Volumn 3, Issue , 2010, Pages

  Leekitcharoenphon, Pimlapas ^a   Taweemuang, Udon ^a   Palittapongarnpim, Prasit ^a,b   Kotewong, Rattanawadee ^c   Supasiri, Thararat ^c   Sonthayanon, Burachai ^a,b  

^a MAHIDOL UNIVERSITY   (Thailand)

^b NATIONAL SCIENCE AND TECHNOLOGY DEVELOPMENT AGENCY   (Thailand)

^c SRINAKHARINWIROT UNIVERSITY   (Thailand)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMALIA; ARTEMIA; ARTEMIA FRANCISCANA; CAENORHABDITIS ELEGANS; CARCINUS MAENAS; CLADOCERA; CRUSTACEA; DAPHNIA; DAPHNIA PULEX; DECAPODA (CRUSTACEA); DROSOPHILA MELANOGASTER; FENNEROPENAEUS CHINENSIS; HEXAPODA; HOMARUS AMERICANUS; LITOPENAEUS VANNAMEI; MARSUPENAEUS JAPONICUS; PENAEIDAE; PENAEUS; PENAEUS MONODON; SIPHONAPTERA (FLEAS);

EID: 78149347750     PISSN: None     EISSN: 17560500     Source Type: Journal    
DOI: 10.1186/1756-0500-3-295     Document Type: Article

References (31)

1. Detection of major penaeid shrimp viruses in Asia, a historical perspective with emphasis on Thailand. TW Flegel, Aquaculture 2006 258 1 33
2. Shrimp farming in China: Operating characteristics, environmental impact and perspectives. X Biao Y Kaijin, Ocean & Coastal Management 2007 50 538 550
3. GenBank. DA Benson I Karsch-Mizrachi DJ Lipman J Ostell EW Sayers, Nucleic Acids Res 2010 38 46 D51
4. wFleaBase: the Daphnia genome database. JK Colbourne VR Singan DG Gilbert, BMC Bioinformatics 2005 6 45
5. Sampling Daphnia's expressed genes: preservation, expansion and invention of crustacean genes with reference to insect genomes. JK Colbourne BD Eads J Shaw E Bohuski DJ Bauer J Andrews, BMC Genomics 2007 8 217
6. The components of the Daphnia pulex immune system as revealed by complete genome sequencing. SJ McTaggart C Conlon JK Colbourne ML Blaxter TJ Little, BMC Genomics 2009 10 175
7. dbEST - database for "expressed sequence tags". MS Boguski TM Lowe CM Tolstoshev, Nature Genet 1993 4 332 3
8. Penaeus monodon gene discovery project: The generation of an EST collection and establishment of a database. A Tassanakajon S Klinbunga N Paunglarp V Rimphanitchayakit A Udomkit S Jitrapakdee K Sritunyalucksana A Phongdara S Pongsomboon P Supungul S Tang K Kuphanumart R Pichyangkura C Lursinsap, Gene 2006 384 104 112
9. Comparative analysis of differentially expressed genes in normal and white spot syndrome virus infected Penaeus monodon. JH Leu CC Chang JL Wu CW Hsu I Hirono T Aoki HF Juan CF Lo GH Kou HC Huang, BMC Genomics 2007 8 120
10. The genome sequence of Drosophila melanogaster. MD Adams SE Celniker RA Holt CA Evans JD Gocayne PG Amanatides SE Scherer PW Li RA Hoskins RF Galle RA George SE Lewis S Richards M Ashburner SN Henderson GG Sutton JR Wortman MD Yandell Q Zhang LX Chen RC Brandon YH Rogers RG Blazej M Champe BD Pfeiffer KH Wan C Doyle EG Baxter G Helt CR Nelson GL Gabor JF Abril A Agbayani HJ An C Andrews-Pfannkoch D Baldwin RM Ballew A Basu J Baxendale L Bayraktaroglu EM Beasley KY Beeson PV Benos BP Berman D Bhandari S Bolshakov D Borkova MR Botchan J Bouck P Brokstein P Brottier KC Burtis DA Busam H Butler E Cadieu A Center I Chandra JM Cherry S Cawley C Dahlke LB Davenport P Davies B de Pablos A Delcher Z Deng AD Mays I Dew SM Dietz K Dodson LE Doup M Downes S Dugan-Rocha BC Dunkov P Dunn KJ Durbin CC Evangelista C Ferraz S Ferriera W Fleischmann C Fosler AE Gabrielian NS Garg WM Gelbart K Glasser A Glodek F Gong JH Gorrell Z Gu P Guan M Harris NL Harris D Harvey TJ Heiman JR Hernandez J Houck D Hostin KA Houston TJ Howland MH Wei C Ibegwam M Jalali F Kalush GH Karpen Z Ke JA Kennison KA Ketchum BE Kimmel CD Kodira C Kraft S Kravitz D Kulp Z Lai P Lasko Y Lei AA Levitsky J Li Z Li Y Liang X Lin X Liu B Mattei TC McIntosh MP McLeod D McPherson G Merkulov NV Milshina C Mobarry J Morris A Moshrefi SM Mount M Moy B Murphy L Murphy DM Muzny DL Nelson DR Nelson KA Nelson K Nixon DR Nusskern JM Pacleb M Palazzolo GS Pittman S Pan J Pollard V Puri MG Reese K Reinert K Remington RD Saunders F Scheeler H Shen BC Shue I Sidén-Kiamos M Simpson MP Skupski T Smith E Spier AC Spradling M Stapleton R Strong E Sun R Svirskas C Tector R Turner E Venter AH Wang X Wang ZY Wang DA Wassarman GM Weinstock J Weissenbach SM Williams T Woodage KC Worley D Wu S Yang QA Yao J Ye RF Yeh JS Zaveri M Zhan G Zhang Q Zhao L Zheng XH Zheng FN Zhong W Zhong X Zhou S Zhu X Zhu HO Smith RA Gibbs EW Myers GM Rubin JC Venter, Science 2000 287 2185 95
11. The genome sequence of the malarial mosquito Anopheles gambiae. RA Holt GM Subramanian A Halpern GG Sutton R Charlab DR Nusskern P Wincker AG Clark JM Ribeiro R Wides,, et al. Science 2002 298 129 149
12. Genome sequence of Aedes aegypti, a major arbovirus vector. V Nene JR Wortman D Lawson B Haas C Kodira Z Tu B Loftus Z Xi K Megy M Grabherr Q Ren,, et al. Science 2007 316 1718 1723
13. The genome of the model beetle and pest Tribolium castaneum. Tribolium Genome Sequencing Consortium, Nature 2008 452 949 955
14. Genome sequence of the nematoe C. elegans: A platform for investigating biology. C. elegans Sequencing Consortium, Science 1998 282 2012 2018
15. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. LD Stein Z Bao D Blasiar T Blumenthal MR Brent N Chen A Chinwalla L Clarke C Clee A Coghlan A Coulson P D'Eustachio DH Fitch LA Fulton RE Fulton S Griffiths-Jones TW Harris LW Hillier R Kamath PE Kuwabara ER Mardis MA Marra TL Miner P Minx JC Mullikin RW Plumb J Rogers JE Schein M Sohrmann J Spieth JE Stajich C Wei D Willey RK Wilson R Durbin RH Waterston, PLoS Biol 2003 1 45
16. The genome of the sea urchin Strongylocentrotus purpuratus. Sea Urchin Genome Sequencing Consortium, Science 2006 314 941 952
17. Complementary DNA sequencing: expressed sequence tags and human genome project. MD Adams JM Kelley JD Gocayne M Dubnick MH Polymeropoulos H Xiao CR Merril A Wu B Olde RF Moreno,, et al. Science 1991 252 1651 6
18. Molecular cloning, characterization and expression of a masquerade-like serine proteinase homologue from black tiger shrimp Penaeus monodon. P Amparyup R Jitvaropas N Pulsook A Tassanakajon, Fish & Shellfish Immunol 2007 22 535 546
19. PmRab7 is a VP28-binding protein involved in White Spot Syndrome Virus infection in shrimp. K Sritunyalucksana W Wannapho CF Lo TW Flegel, J Virol 2006 80 10734 10742
20. Suppression subtractive hybridization (SSH) for isolation and characterization of genes related to testicular development in the giant tiger shrimp Penaeus monodon. R Leelatanawit S Klinbunga T Aoki I Hirono R Valyasevi P Menasveta, BMB Report 2008 41 796 802
21. The ribophorin I from Penaeus monodon shrimp: cDNA cloning, expression and phylogenetic analysis. C Chotwiwatthanakun J Ngopon S Unajak S Jitrapakdee, Comparative Biochem Physiol part B 2008 150 331 337
22. Molecular characterization and expression analysis of a c-type and two novel muramidase-deficient i-type lysozymes from Penaeus monodon. P Supungul V Rimphanitchayakit T Aoki I Hirono A Tassanakajon, Fish & Shellfish Immunol 2010 28 490 498
23. Transcriptome analysis of gills from the white shrimp Litopenaeus vannamei infected with White Spot Syndrome Virus. A Clavero-Salas RR Sotelo-Mundo T Gollas-Galvn J Hernndez-Lápez AB Peregrino-Uriarte A Muhlia-Almazn G Yepiz-Plascencia, Fish & Shellfish Immunol 2007 23 459 472
24. Insights into the immune transcriptome of the shrimp Litopenaeus vannamei: tissue-specific expression profiles and transcriptome responses to immune challenge. J Robalino JS Almeida D McKillen J Colglazier HF Trent YA Chen MET Peck CL Browdy RW Chapman GW Warr PS Gross, Physiol Genomics 2007 29 44 56
25. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. SF Altschul TL Madden AA Schäffer J Zhang Z Zhang W Miller DJ Lipman, Nucleic Acids Res 1997 25 3389 3402
26. Gene ontology: tool for the unification of biology. M Ashburner CA Ball JA Blake D Botstein H Butler JM Cherry AP Davis K Dolinski SS Dwight JT Eppig MA Harris DP Hill L Issel-Tarver A Kasarskis S Lewis JC Matese JE Richardson M Ringwald GM Rubin G Sherlock, The Gene Ontology Consortium Nat Genet 2000 25 25 9
27. FlyBase: genes and gene models. RA Drysdale MA Crosby The FlyBase Consortium, Nucleic Acids Res 2005 33 390 D395
28. WormBase: a comprehensive data resource for Caenorhabditis biology and genomics. N Chen TW Harris I Antoshechkin C Bastiani T Bieri D Blasiar K Bradnam P Canaran J Chan C-K Chen WJ Chen F Cunningham P Davis E Kenny R Kishore D Lawson R Lee H-M Muller C Nakamura S Pai P Ozersky A Petcherski A Rogers A Sabo EM Schwarz K Van Auken Q Wang R Durbin J Spieth PW Sternberg LD Stein, Nucleic Acids Res 2005 33 383 D389
29. Ensembl. T Hubbard D Andrews M Caccamo G Cameron Y Chen M Clamp L Clarke G Coates T Cox F Cunningham V Curwen T Cutts T Down R Durbin XM Fernandez-Suarez J Gilbert M Hammond J Herrero H Hotz K Howe V Iyer K Jekosch A Kahari A Kasprzyk D Kneefe S Keenan F Kokocinsci D London I Longden G McVicker C Melsopp P Meidl S Potter G Proctor M Rae D Rios M Schuster S Searle J Severin G Slater D Smedley J Smith W Spooner A Stabenau J Stalker R Storey S Trevanion A Ureta-Vidal J Vogel S White C Woodwark E Birney, Nucleic Acids Res 2005 33 447 D453
30. The Universal Protein Resources. The UniProt Consortium, Nucleic Acids Res 2008 36 190 D195
31. The Bioperl Toolkit: Perl Modules for the Life Sciences. JE Stajich D Bloch K Boulez SE Brenner SA Chervitz C Dagdigian G Fuellen JGR Gilbert I Korf H Lapp H Lehvaslaiho C Matsalla CJ Mungall BI Osborne MR Pocock P Schnattner M Senger LD Stein E Stupka MD Wilkinson E Birney, Genome Res 2002 12 1611 1618