-
1
-
-
0004282618
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Riddle,D.L., Blumenthal,T., Meyer,B.J. and Priess,J.R. (1997) C. elegans II. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(1997)
C. Elegans II
-
-
Riddle, D.L.1
Blumenthal, T.2
Meyer, B.J.3
Priess, J.R.4
-
2
-
-
0346494826
-
WormBase: A multi-species resource for nematode biology and genomics
-
(Database issue)
-
Harris,T.W., Chen,N., Cunningham,F., Tello-Ruiz,M., Antoshechkin,I., Bastiani,C., Bieri,T., Blasiar,D., Bradnam,K., Chan,J. et al. (2004) WormBase: a multi-species resource for nematode biology and genomics. Nucleic Acids Res., 32 (Database issue), D411-D417.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Harris, T.W.1
Chen, N.2
Cunningham, F.3
Tello-Ruiz, M.4
Antoshechkin, I.5
Bastiani, C.6
Bieri, T.7
Blasiar, D.8
Bradnam, K.9
Chan, J.10
-
3
-
-
0037246685
-
WormBase: A cross-species database for comparative genomics
-
Harris,T.W., Lee,R., Schwarz,E., Bradnam,K., Lawson,D., Chen,W., Blasier,D., Kenny,E., Cunningham,F., Kishore,R. et al. (2003) WormBase: a cross-species database for comparative genomics. Nucleic Acids Res., 31, 133-137.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 133-137
-
-
Harris, T.W.1
Lee, R.2
Schwarz, E.3
Bradnam, K.4
Lawson, D.5
Chen, W.6
Blasier, D.7
Kenny, E.8
Cunningham, F.9
Kishore, R.10
-
4
-
-
0035165576
-
WormBase: Network access to the genome and biology of Caenorhabditis elegans
-
Stein,L., Sternberg,P., Durbin,R., Thierry-Mieg,J. and Spieth,J. (2001) WormBase: network access to the genome and biology of Caenorhabditis elegans. Nucleic Acids Res., 29, 82-86.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 82-86
-
-
Stein, L.1
Sternberg, P.2
Durbin, R.3
Thierry-Mieg, J.4
Spieth, J.5
-
5
-
-
0032509302
-
The C.elegans Sequencing Consortium Genome sequence of the nematode C.elegans: A platform for investigating biology
-
The C.elegans Sequencing Consortium (1998) Genome sequence of the nematode C.elegans: a platform for investigating biology. Science, 282, 2012-2018.
-
(1998)
Science
, vol.282
, pp. 2012-2018
-
-
-
6
-
-
7444261393
-
WormBase as an integrated platform for the C. elegans ORFeome
-
Chen,N., Lawson,D., Bradnam,K. and Harris,T.W. (2004) WormBase as an integrated platform for the C. elegans ORFeome. Genome Res. 14, 2155-2161.
-
(2004)
Genome Res.
, vol.14
, pp. 2155-2161
-
-
Chen, N.1
Lawson, D.2
Bradnam, K.3
Harris, T.W.4
-
7
-
-
0037448540
-
Systematic functional analysis of the Caenorhabditis elegans genome using RNAi
-
Kamath,R.S., Fraser,A.G., Dong,Y., Poulin,G., Durbin,R., Gotta,M., Kanapin,A., Le Bot,N., Moreno,S., Sohrmann,M. et al. (2003) Systematic functional analysis of the Caenorhabditis elegans genome using RNAi. Nature, 421, 231-237.
-
(2003)
Nature
, vol.421
, pp. 231-237
-
-
Kamath, R.S.1
Fraser, A.G.2
Dong, Y.3
Poulin, G.4
Durbin, R.5
Gotta, M.6
Kanapin, A.7
Le Bot, N.8
Moreno, S.9
Sohrmann, M.10
-
8
-
-
0035860551
-
A gene expression map for Caenorhabditis elegans
-
Kim,S.K., Lund,J., Kiraly,M., Duke,K., Jiang,M., Stuart,J.M., Eizinger,A., Wylie,B.N. and Davidson,G.S. (2001) A gene expression map for Caenorhabditis elegans. Science, 293, 2087-2092.
-
(2001)
Science
, vol.293
, pp. 2087-2092
-
-
Kim, S.K.1
Lund, J.2
Kiraly, M.3
Duke, K.4
Jiang, M.5
Stuart, J.M.6
Eizinger, A.7
Wylie, B.N.8
Davidson, G.S.9
-
9
-
-
9144264169
-
A map of the interactome network of the metazoan C. elegans
-
Li,S., Armstrong,C.M., Bertin,N., Ge,H., Milstein,S., Boxem,M., Vidalain,P.O., Han,J.D., Chesneau,A., Hao,T. et al. (2004) A map of the interactome network of the metazoan C. elegans. Science, 303, 540-543.
-
(2004)
Science
, vol.303
, pp. 540-543
-
-
Li, S.1
Armstrong, C.M.2
Bertin, N.3
Ge, H.4
Milstein, S.5
Boxem, M.6
Vidalain, P.O.7
Han, J.D.8
Chesneau, A.9
Hao, T.10
-
10
-
-
0034892172
-
Changes in gene expression associated with developmental arrest and longevity in Caenorhabditis elegans
-
Jones,S.J., Riddle,D.L., Pouzyrev,A.T., Velculescu,V.E., Hillier,L., Eddy,S.R., Stricklin,S.L., Baillie,D.L., Waterston,R. and Marra,M.A. (2001) Changes in gene expression associated with developmental arrest and longevity in Caenorhabditis elegans. Genome Res., 11, 1346-1352.
-
(2001)
Genome Res.
, vol.11
, pp. 1346-1352
-
-
Jones, S.J.1
Riddle, D.L.2
Pouzyrev, A.T.3
Velculescu, V.E.4
Hillier, L.5
Eddy, S.R.6
Stricklin, S.L.7
Baillie, D.L.8
Waterston, R.9
Marra, M.A.10
-
11
-
-
3242683216
-
-
Cold Spring Harbor, NY
-
McKay,S.J., Johnsen,R., Khattra,J., Asano,J., Baillie,D.L., Chan,S., Dube,N., Fang,L., Goszczynski,B., Ha,E. et al. (2004) Cold Spring Harbor Symposia on Quantitative Biology. Cold Spring Harbor, NY, Vol. 68, pp. 159-170.
-
(2004)
Cold Spring Harbor Symposia on Quantitative Biology
, vol.68
, pp. 159-170
-
-
McKay, S.J.1
Johnsen, R.2
Khattra, J.3
Asano, J.4
Baillie, D.L.5
Chan, S.6
Dube, N.7
Fang, L.8
Goszczynski, B.9
Ha, E.10
-
12
-
-
4243088097
-
The genome sequence of Caenorhabditis briggsae: A platform for comparative genomics
-
Stein,L.D., Bao,Z., Blasiar,D., Blumenthal,T., Brent,M.R., Chen,N., Chinwalla,A., Clarke,L., Clee,C., Coghlan,A. et al. (2003) The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. PLoS Biol., 1, E45.
-
(2003)
PLoS Biol.
, vol.1
-
-
Stein, L.D.1
Bao, Z.2
Blasiar, D.3
Blumenthal, T.4
Brent, M.R.5
Chen, N.6
Chinwalla, A.7
Clarke, L.8
Clee, C.9
Coghlan, A.10
-
13
-
-
0347756679
-
The draft genome sequence of the nematode Caenorhabditis briggsae, a companion to C. elegans
-
Gupta,B.P. and Sternberg,P.W. (2003) The draft genome sequence of the nematode Caenorhabditis briggsae, a companion to C. elegans. Genome Biol., 4, 238.
-
(2003)
Genome Biol.
, vol.4
, pp. 238
-
-
Gupta, B.P.1
Sternberg, P.W.2
-
14
-
-
0042902833
-
The COG database: An updated version includes eukaryotes
-
Tatusov,R.L., Fedorova,N.D., Jackson,J.D., Jacobs,A.R., Kiryutin,B., Koonin,E.V., Krylov,D.M., Mazumder,R., Mekhedov,S.L., Nikolskaya,A.N. et al. (2003) The COG database: an updated version includes eukaryotes. BMC Bioinformatics, 4, 41.
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 41
-
-
Tatusov, R.L.1
Fedorova, N.D.2
Jackson, J.D.3
Jacobs, A.R.4
Kiryutin, B.5
Koonin, E.V.6
Krylov, D.M.7
Mazumder, R.8
Mekhedov, S.L.9
Nikolskaya, A.N.10
-
15
-
-
1242274627
-
Genome annotation by high-throughput 5′ RNA end determination
-
Hwang,B.J., Muller,H.M. and Sternberg,P.W. (2004) Genome annotation by high-throughput 5′ RNA end determination. Proc. Natl Acad. Sci. USA, 101, 1650-1655.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 1650-1655
-
-
Hwang, B.J.1
Muller, H.M.2
Sternberg, P.W.3
-
16
-
-
0036616218
-
The Protein Data Bank
-
Berman,H.M., Battistuz,T., Bhat,T.N., Bluhm,W.F., Bourne,P.E., Burkhardt,K., Feng,Z., Gilliland,G.L., Iype,L., Jain,S. et al. (2002) The Protein Data Bank. Acta Crystallogr. D Biol. Crystallogr., 58, 899-907.
-
(2002)
Acta Crystallogr. D Biol. Crystallogr.
, vol.58
, pp. 899-907
-
-
Berman, H.M.1
Battistuz, T.2
Bhat, T.N.3
Bluhm, W.F.4
Bourne, P.E.5
Burkhardt, K.6
Feng, Z.7
Gilliland, G.L.8
Iype, L.9
Jain, S.10
-
17
-
-
18644368714
-
The Bioperl toolkit: Perl modules for the life sciences
-
Stajich,J.E., Block,D., Boulez,K., Brenner,S.E., Chervitz,S.A., Dagdigian,C., Fuellen,G., Gilbert,J.G., Korf,I., Lapp,H. et al. (2002) The Bioperl toolkit: Perl modules for the life sciences. Genome Res., 12, 1611-1618.
-
(2002)
Genome Res.
, vol.12
, pp. 1611-1618
-
-
Stajich, J.E.1
Block, D.2
Boulez, K.3
Brenner, S.E.4
Chervitz, S.A.5
Dagdigian, C.6
Fuellen, G.7
Gilbert, J.G.8
Korf, I.9
Lapp, H.10
-
18
-
-
2942547885
-
The distributed annotation system
-
Dowell,R.D., Jokerst,R.M., Day,A., Eddy,S.R. and Stein,L. (2001) The distributed annotation system. BMC Bioinformatics, 2 7.
-
(2001)
BMC Bioinformatics
, vol.2
, pp. 7
-
-
Dowell, R.D.1
Jokerst, R.M.2
Day, A.3
Eddy, S.R.4
Stein, L.5
-
19
-
-
0032441460
-
Scriptable access to the Caenorhabditis elegans genome sequence and other ACEDB databases
-
Stein,L.D. and Thierry-Mieg,J. (1998) Scriptable access to the Caenorhabditis elegans genome sequence and other ACEDB databases. Genome Res., 8, 1308-1315.
-
(1998)
Genome Res.
, vol.8
, pp. 1308-1315
-
-
Stein, L.D.1
Thierry-Mieg, J.2
-
20
-
-
0043122927
-
WU-Blast2 server at the European Bioinformatics Institute
-
Lopez,R., Silventoinen,V., Robinson,S., Kibria,A. and Gish,W. (2003) WU-Blast2 server at the European Bioinformatics Institute. Nucleic Acids Res., 31, 3795-3798.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3795-3798
-
-
Lopez, R.1
Silventoinen, V.2
Robinson, S.3
Kibria, A.4
Gish, W.5
-
21
-
-
0036226603
-
BLAT - The BLAST-like alignment tool
-
Kent,W.J. (2002) BLAT - the BLAST-like alignment tool. Genome Res., 12, 656-664.
-
(2002)
Genome Res.
, vol.12
, pp. 656-664
-
-
Kent, W.J.1
-
22
-
-
0030920610
-
Sequence mapping by electronic PCR
-
Schuler,G.D. (1997) Sequence mapping by electronic PCR. Genome Res., 7, 541-550.
-
(1997)
Genome Res.
, vol.7
, pp. 541-550
-
-
Schuler, G.D.1
-
23
-
-
14044254746
-
Testpresso: An ontology-based information retrieval and extraction system for C. elegans literature
-
Muller,H.M., Kenny,E. and Sternberg,P. (2004) Testpresso: an ontology-based information retrieval and extraction system for C. elegans literature. PLoS Biol., 2, e309.
-
(2004)
PLoS Biol.
, vol.2
-
-
Muller, H.M.1
Kenny, E.2
Sternberg, P.3
-
24
-
-
2942521105
-
CisOrtho: A program pipeline for genome-wide identification of transcription factor target genes using phylogenetic footprinting
-
Bigelow,H.R., Wenick,A.S., Wong,A. and Hobert,O. (2004) CisOrtho: a program pipeline for genome-wide identification of transcription factor target genes using phylogenetic footprinting. BMC Bioinformatics, 5, 27.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 27
-
-
Bigelow, H.R.1
Wenick, A.S.2
Wong, A.3
Hobert, O.4
-
25
-
-
0012306021
-
Apollo: A sequence annotation editor
-
RESEARCH0082
-
Lewis,S.E., Searle,S.M., Harris,N., Gibson,M., Lyer,V., Richter,J., Wiel,C., Bayraktaroglir,L., Birney,E., Crosby,M.A. et al. (2002) Apollo: a sequence annotation editor. Genome Biol., 3 RESEARCH0082.
-
(2002)
Genome Biol.
, vol.3
-
-
Lewis, S.E.1
Searle, S.M.2
Harris, N.3
Gibson, M.4
Lyer, V.5
Richter, J.6
Wiel, C.7
Bayraktaroglir, L.8
Birney, E.9
Crosby, M.A.10
-
26
-
-
18644378331
-
The generic genome browser: A building block for a model organism system database
-
Stein,L.D., Mungall,C., Shu,S., Caudy,M., Mangone,M., Day,A., Nickerson,E., Stajich,J.E., Harris,T.W., Arva,A. et al. (2002) The generic genome browser: a building block for a model organism system database. Genome Res., 12, 1599-1610.
-
(2002)
Genome Res.
, vol.12
, pp. 1599-1610
-
-
Stein, L.D.1
Mungall, C.2
Shu, S.3
Caudy, M.4
Mangone, M.5
Day, A.6
Nickerson, E.7
Stajich, J.E.8
Harris, T.W.9
Arva, A.10
-
27
-
-
0037249406
-
The FlyBase database of the Drosophila genome projects and community literature
-
FlyBase
-
FlyBase (2003) The FlyBase database of the Drosophila genome projects and community literature. Nucleic Acids Res., 31 172-175.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 172-175
-
-
-
28
-
-
9144256665
-
Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms
-
(Database issue)
-
Christie,K.R., Weng,S., Balakrishnan,R., Costanzo,M.C., Dolinski,K., Dwight,S.S., Engel,S.R., Feierbach,B., Fisk,D.G., Hirschman,J.E. et al. (2004) Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms. Nucleic Acids Res., 32 (Database issue), D311-D314.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Christie, K.R.1
Weng, S.2
Balakrishnan, R.3
Costanzo, M.C.4
Dolinski, K.5
Dwight, S.S.6
Engel, S.R.7
Feierbach, B.8
Fisk, D.G.9
Hirschman, J.E.10
-
29
-
-
9144259164
-
Ensembl 2004
-
(Database issue)
-
Birney,E., Andrews,D., Bevan,P., Caccamo,M., Cameron,G., Chen,Y., Clarke,L., Coates,G., Cox,T., Cuff,J. et al. (2004) Ensembl 2004. Nucleic Acids Res., 32 (Database issue), D468-D470.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Birney, E.1
Andrews, D.2
Bevan, P.3
Caccamo, M.4
Cameron, G.5
Chen, Y.6
Clarke, L.7
Coates, G.8
Cox, T.9
Cuff, J.10
-
30
-
-
18444394318
-
Rat Genome Database (RGD): Mapping disease onto the genome
-
Twigger,S., Lu,J., Shimoyama,M., Chen,D., Pasko,D., Long,H., Ginster,J., Chen,C.F., Nigam,R., Kwitek,A. et al. (2002) Rat Genome Database (RGD): mapping disease onto the genome. Nucleic Acids Res. 30, 125-128.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 125-128
-
-
Twigger, S.1
Lu, J.2
Shimoyama, M.3
Chen, D.4
Pasko, D.5
Long, H.6
Ginster, J.7
Chen, C.F.8
Nigam, R.9
Kwitek, A.10
-
31
-
-
9144234728
-
The Mouse Genome Database (MGD): Integrating biology with the genome
-
(Database issue)
-
Bult,C.J., Blake,J.A., Richardson,J.E., Kadin,J.A., Eppig,J.T., Baldarelli,R.M., Barsanti,K., Baya,M., Beal,J.S., Boddy,W.J. et al. (2004) The Mouse Genome Database (MGD): integrating biology with the genome. Nucleic Acids Res., 32 (Database issue), D476-D481.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Bult, C.J.1
Blake, J.A.2
Richardson, J.E.3
Kadin, J.A.4
Eppig, J.T.5
Baldarelli, R.M.6
Barsanti, K.7
Baya, M.8
Beal, J.S.9
Boddy, W.J.10
-
32
-
-
9144269670
-
EnsMart: A generic system for fast and flexible access to biological data
-
Kasprzyk,A., Keefe,D., Smedley,D., London,D., Spooner,W., Melsopp,C., Hammond,M., Rocca-Serra,P., Cox,T. and Birney,E. (2004) EnsMart: a generic system for fast and flexible access to biological data. Genome Res., 14, 160-169.
-
(2004)
Genome Res.
, vol.14
, pp. 160-169
-
-
Kasprzyk, A.1
Keefe, D.2
Smedley, D.3
London, D.4
Spooner, W.5
Melsopp, C.6
Hammond, M.7
Rocca-Serra, P.8
Cox, T.9
Birney, E.10
-
33
-
-
0346494819
-
MetaCyc: A multiorganism database of metabolic pathways and enzymes
-
(Database issue)
-
Krieger,C.J., Zhang,P., Mueller,L.A., Wang,A., Paley,S., Arnaud,M., Pick,J., Rhee,S.Y. and Karp,P.D. (2004) MetaCyc: a multiorganism database of metabolic pathways and enzymes. Nucleic Acids Res., 32 (Database issue), D438-D442.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Krieger, C.J.1
Zhang, P.2
Mueller, L.A.3
Wang, A.4
Paley, S.5
Arnaud, M.6
Pick, J.7
Rhee, S.Y.8
Karp, P.D.9
|