Phylogeographic patterns and conservation units of a vulnerable species, Cabot's tragopan (Tragopan caboti), endemic to southeast China

Conservation Genetics

Volumn 11, Issue 6, 2010, Pages 2231-2242

  Dong, Lu ^a   Zhang, Jie ^b   Sun, Yue ^a   Liu, Ying ^a   Zhang, Yanyun ^a   Zheng, Guangmei ^a  

^a BEIJING NORMAL UNIVERSITY   (China)

^b Civil Aviation Administration of China   (China)

Author keywords

China; Management units (MUs); Mitochondrial DNA; Phylogeography; Tragopan caboti

Indexed keywords

CLADISTICS; DIVERGENCE; ENDANGERED SPECIES ACT; ENDEMIC SPECIES; GAMEBIRD; GENETIC VARIATION; GEOGRAPHICAL DISTRIBUTION; GLACIATION; HABITAT FRAGMENTATION; INTRASPECIFIC VARIATION; ISOLATED POPULATION; MITOCHONDRIAL DNA; PHYLOGEOGRAPHY; POPULATION SIZE; SUBSPECIES; TAXONOMY; VULNERABILITY;

CHINA;

TRAGOPAN; TRAGOPAN CABOTI;

EID: 78049376277     PISSN: 15660621     EISSN: 15729737     Source Type: Journal    
DOI: 10.1007/s10592-010-0108-6     Document Type: Article

References (65)

1. Anisimova M, Gascuel O (2006) Approximate likelihood-ratio test for branches: a fast, accurate, and powerful alternative. Syst Biol 55: 539-552.
2. Armstrong DP, Seddon PJ (2008) Direction to reintroduction. Trends Ecol Evol 23: 20-25.
3. Avise JC (2000) Phylogeography. Harvard University Press, Cambridge.
4. Avise JC, Nelson WS (1989) Molecular genetic relationships of the extinct dusky seaside sparrow. Science 243: 646-649.
5. Bandelt H-J, Forster P, Rohl A (1999) Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol 16: 37-48.
6. Benedict NG, Oyler-McCance SJ, Taylor SE, Braun CE, Quinn TW (2003) Evaluation of the eastern (Centrocercus urophasianus urophasianus) and western (Centrocercus urophasianus phaios) subspecies of sage-grouse using mitochondrial control-region sequence data. Conserv Genet 4: 301-310.
7. Brennan LA (1999) Northern bobwhite (Colinus virginianus) In: Poole A, Gill F (eds) The birds of North America. The Birds of North America, Inc., Philadelphia.
8. Chen JK (1989) Systematic and evolutionary biology studies on Chinese Sagittaria. Wuhan University Press, Wuhan, China.
9. Cheng TH, Wu MC (1979) A new subspecies of Tragopan caboti-Tragopan caboti guangxiensis. Acta Ecol Sin 25: 292-294.
10. Cheng TH, Tan YK, Lu TC, Tang CZ, Bao GJ, Li FL (1978) Fauna sinica. Aves vol. 4: galliformes. Science Press, Beijing.
11. Collar NJ, Andreev AV, Chen S, Crosby MJ, Subramanya S, Tobias JA (2001) Threatened bids of Asia. Cambridge University Press, Cambridge.
12. Crandall KA, Templeton AR (1993) Empirical tests of some predictions from coalescent theory with applications to intraspecific phylogeny reconstruction. Genetics 134: 959-969.
13. Crandall KA, Bininda-Emonds ORP, Mace GM, Wayne RK (2000) Considering evolutionary processes in conservation biology. Trends Ecol Evol 15: 290-295.
14. del Hoyo J, Elliott A, Sargatal J (1994) Handbook of the birds of the world, volume 2: new world vultures to Guinea fowl. Lynx Edicions, Barcelona, Spain.
15. Deng WH, Zheng GM (2004) Landscape and habitat factors affecting Cabot's tragopan Tragopan caboti occurrence in habitat fragments. Biol Conserv 117: 25-32.
16. Deng WH, Zheng GM, Zhang ZW, Garson PJ, McGowan PJK (2005) Providing artificial nest platforms for Cabot's tragopan Tragopan caboti (Aves: Galliformes): a useful conservation tool? Oryx 39: 158-163.
17. Ding CQ, Zheng GM (1997) The nest site selection of the Cabot's tragopan (Tragopan caboti). Acta Zool Sin 43: 27-33.
18. Eo SH, Wares JP, Carroll JP (2009) Subspecies and units for conservation and management of the northern bobwhite in the eastern United States. Conserv Genet 11: 867-875.
19. Excoffier L, Laval G, Schneider S (2005) Arlequin ver. 3. 11: an integrated software package for population genetics data analysis. Evol Bioinform Online 1: 47-50.
20. Frankham R, Ballou JD, Briscoe DA (2002) Introduction to conservation genetics. Cambridge University Press, Cambridge.
21. Fu YX (1997) Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147: 915-925.
22. Fuller RA, Garson PJ (2000) Pheasants: Status Survey and Conservation Action Plan 2000-2004. IUCN, Cambridge, UK.
23. Guindon S, Gascuel O (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52: 696-704.
24. Holder K, Montgomerie R, Friesen VL (2004) Genetic diversity and management of Nearctic rock ptarmigan Lagopus mutus. Can J Zool 82: 564-575.
25. Houlden BA, Costello BH, Sharkey D, Fowler EV, Melzer A, Ellis W, Carrick F, Baverstock PR, Elphinstone MS (1999) Phylogeographic differentiation in the mitochondrial control region in the koala, Phascolarctos cinereus (Goldfuss 1817). Mol Ecol 8: 999-1011.
26. IUCN (2008) IUCN Redlist of Threatened Species. IUCN, Gland, Switzerland.
27. Kimball RT, Braun EL, Zwartjes P, Crowe TM, Ligon JD (1999) A molecular phylogeny of the pheasants and partridges suggests that these lineages are not monophyletic. Mol Phylogenet Evol 11: 38-54.
28. Klicka J, Zink RM (1997) The importance of recent ice ages in speciation: a failed paradigm. Science 277: 1666-1669.
29. Li SH, Yeung CK, Feinstein J, Han LX, Le MH, Wang CX, Ding P (2009) Sailing through the Late Pleistocene: unusual historical demography of an east Asian endemic, the Chinese Hwamei (Leucodioptron canorum canorum), during the last glacial period. Mol Ecol 18: 622-633.
30. Lovette IJ (2004) Mitochondrial dating and mixed support for the "2%" rule in birds. Auk 121: 1-6.
31. Moritz C (1994) Applications of mitochondrial DNA analysis in conservation: a critical review. Mol Ecol 3: 401-411.
32. Nei M (1987) Molecular evolutionary genetics. Columbia University Press, New York.
33. Nesje M, Røed KH, Lifjeld JT, Linberg P, Steen OF (2000) Genetic relationships in the peregrine falcon (Falco peregrinus) analysed by microsatellite DNA markers. Mol Ecol 9: 53-60.
34. Nielsen R, Wakeley JW (2001) Distinguishing migration from isolation: an MCMC approach. Genetics 158: 885-896.
35. Peterson AT (1992) Philopatry and genetic differentiation in the Aphelocoma jays (Gorvidae). Biol J Linn Soc Lond 47: 249-260.
36. Posada D (2008) jModelTest: phylogenetic model averaging. Mol Biol Evol 25: 1253-1256.
37. Posada D, Crandall KA (2001) Intraspecific gene genealogies: trees grafting into networks. Trends Ecol Evol 16: 37-45.
38. Qian FW, Zheng GM (1993) Study on habitat of Cabot's tragopan. J Beijing Norm Univ 29: 256-264.
39. Qu JY, Liu NF, Bao XK, Wang XL (2009) Phylogeography of the ring-necked pheasant (Phasianus colchicus) in China. Mol Phylogenet Evol 52: 125-132.
40. Randi E, Lucchini V (1998) Organization and evolution of the mitochondrial DNA control region in the avian genus Alectoris. J Mol Evol 47: 449-462.
41. Randi E, Lucchini V, Prewitt TA, Kimball RT, Braun EL, Ligon JD (2000) Mitochondrial DNA phylogeny and speciation in the tragopans. Auk 117: 1003-1015.
42. Randi E, Tabarroni C, Rimond S, Lucchini V, Sfougaris A (2003) Phylogeography of the rock partridge Alectoris graeca. Mol Ecol 12: 2201-2214.
43. Rogers AR, Harpending H (1992) Population growth curves in the distribution of pairwise genetic differences. Mol Biol Evol 19: 522-569.
44. Rozas J, Sáchez-delbarrio JC, Messeguer X, Rozas R (2003) DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19: 2496-2497.
45. Sorenson MD, Fleischer RC (1996) Multiple independent transpositions of mitochondrial DNA control region sequences to the nucleus. Proc Natl Acad Sci USA 93: 15239-15243.
46. Spaulding AW, Mock KE, Schroeders MA, Warheit KI (2006) Recency, range expansion, and unsorted lineages: implications for interpreting neutral genetic variation in the sharp-tailed grouse (Tympanuchus phasianellus). Mol Ecol 15: 2317-2332.
47. Sun YH, Zheng GM (1992) The home range of Cabot's tragopan by radio tracking. Acta Zool Sin 38: 385-392.
48. Sun Y, Dong L, Zhang YY, Zheng GM, Browne SJ (2009) Is a forest road a barrier for Cabot's tragopan in Wuyishan, Jiangxi, China? Oryx 43: 614-617.
49. Swofford DL (2002) PAUP*: phylogenetic analysis using parsimony (*and other methods). Version 4. 0b10. Sinauer Associates, Sunderland, MA.
50. Tajima F (1983) Evolutionary relationship of DNA sequences in finite populations. Genetics 105: 437-460.
51. Tajima F (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585-595.
52. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4. 0. Mol Biol Evol 24: 1596-1599.
53. Winnepenninckx B, Backeljau T, De Wachter R (1993) Extraction of high molecular weight DNA from molluscs. Trends Genet 9: 407.
54. Young L, Zheng GM, Zhang ZW (1991) Winter movements and habitat use by Cabot's tragopan Tragopan caboti in southeastern China. Ibis 133: 121-126.
55. Zhang YY (2005) A review on the research of the Cabot's tragopan. Chin J Zool 40: 104-107.
56. Zhang YY (2006) Semen characterization and sperm storage in Cabot's tragopan. Poult Sci 85: 892-898.
57. Zhang JP, Zheng GM (1990) The studies of the population number and structure of Cabot's tragopan (Tragopan caboti). Zool Res Sin 11: 201-207.
58. Zhang YY, Zheng GM (2007) A population viability analysis for Cabot's tragopan (Tragopan caboti) in Wuyanling, southwest China. Bird Conserv Int 17: 151-161.
59. Zheng GM (1987) Tragopan caboti. Chin J Zool 22: 40-43.
60. Zheng GM, Wang QS (1988) China red data book of endangered animals. Science Press, Beijing.
61. Zheng GM, Zhao XR, Song J, Liu ZX, Zhou HQ (1985) On the breeding ecology of Cabot's tragopan. Acta Ecol Sin 5: 379-385.
62. Zink RM (2004) The role of subspecies in obscuring avian biological diversity and misleading conservation policy. Proc R Soc Lond B Biol Sci 271: 561-564.
63. Zink RM, Barrowclough GF (2008) Mitochondrial DNA under siege in avian phylogeography. Mol Ecol 17: 2107-2121.
64. Zink RM, Barrowclough GF, Atwood JL, Blackwell-Rago RC (2000) Genetics, taxonomy and conservation of the threatened California gnatcatcher. Conserv Biol 14: 1394-1405.
65. Zou FS, Lim HC, Marks BD, Moyle RG, Sheldon FH (2007) Molecular phylogenetic analysis of the grey-cheeked Fulvetta (Alcippe morrisonia) of China and Indochina: a case of remarkable genetic divergence in a 'species'. Mol Phylogenet Evol 44: 165-174.