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Volumn 7, Issue 1, 2010, Pages

Regulation of pathogen metabolism by small RNA

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL RNA; CHAPERONE; MESSENGER RNA; PROTEIN HFQ; UNCLASSIFIED DRUG;

EID: 78049257251     PISSN: 17406765     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ddmec.2010.09.001     Document Type: Review
Times cited : (7)

References (58)
  • 1
    • 70449705831 scopus 로고    scopus 로고
    • The spectrum of latent tuberculosis: Rethinking the biology and intervention strategies
    • C.E. Barry 3rd The spectrum of latent tuberculosis: rethinking the biology and intervention strategies Nat. Rev. Microbiol. 7 2009 845 855
    • (2009) Nat. Rev. Microbiol. , vol.7 , pp. 845-855
    • Barry III, C.E.1
  • 2
    • 43049182981 scopus 로고    scopus 로고
    • The enduring hypoxic response of Mycobacterium tuberculosis
    • T.R. Rustad The enduring hypoxic response of Mycobacterium tuberculosis PLoS One 3 2008 e1502
    • (2008) PLoS One , vol.3 , pp. 1502
    • Rustad, T.R.1
  • 3
    • 0036687143 scopus 로고    scopus 로고
    • The heat shock response of Mycobacterium tuberculosis: Linking gene expression, immunology and pathogenesis
    • G.R. Stewart The heat shock response of Mycobacterium tuberculosis: linking gene expression, immunology and pathogenesis Comp. Funct. Genomics 3 2002 348 351
    • (2002) Comp. Funct. Genomics , vol.3 , pp. 348-351
    • Stewart, G.R.1
  • 4
    • 0043142536 scopus 로고    scopus 로고
    • Transcriptional adaptation of Mycobacterium tuberculosis within macrophages: Insights into the phagosomal environment
    • D. Schnappinger Transcriptional adaptation of Mycobacterium tuberculosis within macrophages: insights into the phagosomal environment J. Exp. Med. 198 2003 693 704
    • (2003) J. Exp. Med. , vol.198 , pp. 693-704
    • Schnappinger, D.1
  • 5
    • 67651225588 scopus 로고    scopus 로고
    • Identification of small RNAs in Mycobacterium tuberculosis
    • K.B. Arnvig, and D.B. Young Identification of small RNAs in Mycobacterium tuberculosis Mol. Microbiol. 73 2009 397 408
    • (2009) Mol. Microbiol. , vol.73 , pp. 397-408
    • Arnvig, K.B.1    Young, D.B.2
  • 6
    • 77955077136 scopus 로고    scopus 로고
    • Multiple small RNAs identified in Mycobacterium bovis BCG are also expressed in Mycobacterium tuberculosis and Mycobacterium smegmatis
    • J.M. Dichiara Multiple small RNAs identified in Mycobacterium bovis BCG are also expressed in Mycobacterium tuberculosis and Mycobacterium smegmatis Nucleic Acids Res. 2010
    • (2010) Nucleic Acids Res.
    • Dichiara, J.M.1
  • 7
    • 34247173351 scopus 로고    scopus 로고
    • Identification of small RNAs in diverse bacterial species
    • J. Livny, and M.K. Waldor Identification of small RNAs in diverse bacterial species Curr. Opin. Microbiol. 10 2007 96 101
    • (2007) Curr. Opin. Microbiol. , vol.10 , pp. 96-101
    • Livny, J.1    Waldor, M.K.2
  • 8
    • 72849114230 scopus 로고    scopus 로고
    • Prokaryotic transcriptomics: A new view on regulation, physiology and pathogenicity
    • R. Sorek, and P. Cossart Prokaryotic transcriptomics: a new view on regulation, physiology and pathogenicity Nat. Rev. Genet. 11 2010 9 16
    • (2010) Nat. Rev. Genet. , vol.11 , pp. 9-16
    • Sorek, R.1    Cossart, P.2
  • 9
    • 58149139033 scopus 로고    scopus 로고
    • A rough guide to the non-coding RNA world of Salmonella
    • J. Vogel A rough guide to the non-coding RNA world of Salmonella Mol. Microbiol. 71 2009 1 11
    • (2009) Mol. Microbiol. , vol.71 , pp. 1-11
    • Vogel, J.1
  • 10
    • 60149089144 scopus 로고    scopus 로고
    • Regulatory RNAs in bacteria
    • L.S. Waters, and G. Storz Regulatory RNAs in bacteria Cell 136 2009 615 628
    • (2009) Cell , vol.136 , pp. 615-628
    • Waters, L.S.1    Storz, G.2
  • 11
    • 33646483181 scopus 로고    scopus 로고
    • The role of RNAs in the regulation of virulence-gene expression
    • P. Romby The role of RNAs in the regulation of virulence-gene expression Curr. Opin. Microbiol. 9 2006 229 236
    • (2006) Curr. Opin. Microbiol. , vol.9 , pp. 229-236
    • Romby, P.1
  • 12
    • 41849139346 scopus 로고    scopus 로고
    • Small RNAs encoded within genetic islands of Salmonella typhimurium show host-induced expression and role in virulence
    • G. Padalon-Brauch Small RNAs encoded within genetic islands of Salmonella typhimurium show host-induced expression and role in virulence Nucleic Acids Res. 36 2008 1913 1927
    • (2008) Nucleic Acids Res. , vol.36 , pp. 1913-1927
    • Padalon-Brauch, G.1
  • 13
    • 75249100904 scopus 로고    scopus 로고
    • The role of Hfq in bacterial pathogens
    • Y. Chao, and J. Vogel The role of Hfq in bacterial pathogens Curr. Opin. Microbiol. 13 2010 24 33
    • (2010) Curr. Opin. Microbiol. , vol.13 , pp. 24-33
    • Chao, Y.1    Vogel, J.2
  • 14
    • 50849105413 scopus 로고    scopus 로고
    • Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq
    • A. Sittka Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq PLoS Genet. 4 2008 e1000163
    • (2008) PLoS Genet. , vol.4 , pp. 1000163
    • Sittka, A.1
  • 15
    • 0036714801 scopus 로고    scopus 로고
    • Predicted structure and phyletic distribution of the RNA-binding protein Hfq
    • X. Sun Predicted structure and phyletic distribution of the RNA-binding protein Hfq Nucleic Acids Res. 30 2002 3662 3671
    • (2002) Nucleic Acids Res. , vol.30 , pp. 3662-3671
    • Sun, X.1
  • 16
    • 69949101616 scopus 로고    scopus 로고
    • On the facultative requirement of the bacterial RNA chaperone, Hfq
    • A. Jousselin On the facultative requirement of the bacterial RNA chaperone, Hfq Trends Microbiol. 17 2009 399 405
    • (2009) Trends Microbiol. , vol.17 , pp. 399-405
    • Jousselin, A.1
  • 17
    • 33847095025 scopus 로고    scopus 로고
    • No detectable effect of RNA-binding protein Hfq absence in Staphylococcus aureus
    • C. Bohn No detectable effect of RNA-binding protein Hfq absence in Staphylococcus aureus BMC Microbiol. 7 2007 10
    • (2007) BMC Microbiol. , vol.7 , pp. 10
    • Bohn, C.1
  • 18
    • 0038187589 scopus 로고    scopus 로고
    • Small non-coding RNAs, co-ordinators of adaptation processes in Escherichia coli: The RpoS paradigm
    • F. Repoila Small non-coding RNAs, co-ordinators of adaptation processes in Escherichia coli: the RpoS paradigm Mol. Microbiol. 48 2003 855 861
    • (2003) Mol. Microbiol. , vol.48 , pp. 855-861
    • Repoila, F.1
  • 19
    • 77349109268 scopus 로고    scopus 로고
    • Role of RpoS in virulence of pathogens
    • T. Dong, and H.E. Schellhorn Role of RpoS in virulence of pathogens Infect. Immun. 78 2010 887 897
    • (2010) Infect. Immun. , vol.78 , pp. 887-897
    • Dong, T.1    Schellhorn, H.E.2
  • 20
    • 33746629034 scopus 로고    scopus 로고
    • Role of histone-like proteins H-NS and StpA in expression of virulence determinants of uropathogenic Escherichia coli
    • C.M. Muller Role of histone-like proteins H-NS and StpA in expression of virulence determinants of uropathogenic Escherichia coli J. Bacteriol. 188 2006 5428 5438
    • (2006) J. Bacteriol. , vol.188 , pp. 5428-5438
    • Muller, C.M.1
  • 21
    • 4444272137 scopus 로고    scopus 로고
    • The small noncoding DsrA RNA is an acid resistance regulator in Escherichia coli
    • R.A. Lease The small noncoding DsrA RNA is an acid resistance regulator in Escherichia coli J. Bacteriol. 186 2004 6179 6185
    • (2004) J. Bacteriol. , vol.186 , pp. 6179-6185
    • Lease, R.A.1
  • 22
    • 33745900506 scopus 로고    scopus 로고
    • Limited role for the DsrA and RprA regulatory RNAs in rpoS regulation in Salmonella enterica
    • A.M. Jones Limited role for the DsrA and RprA regulatory RNAs in rpoS regulation in Salmonella enterica J. Bacteriol. 188 2006 5077 5088
    • (2006) J. Bacteriol. , vol.188 , pp. 5077-5088
    • Jones, A.M.1
  • 23
    • 60649103647 scopus 로고    scopus 로고
    • e stress response in Salmonella enterica serovar Typhimurium
    • E stress response in Salmonella enterica serovar Typhimurium Mol. Microbiol. 71 2009 1228 1238
    • (2009) Mol. Microbiol. , vol.71 , pp. 1228-1238
    • Muller, C.1
  • 24
    • 33751383274 scopus 로고    scopus 로고
    • e-dependent small RNAs of Salmonella respond to membrane stress by accelerating global omp mRNA decay
    • E-dependent small RNAs of Salmonella respond to membrane stress by accelerating global omp mRNA decay Mol. Microbiol. 62 2006 1674 1688
    • (2006) Mol. Microbiol. , vol.62 , pp. 1674-1688
    • Papenfort, K.1
  • 25
    • 34249807616 scopus 로고    scopus 로고
    • e regulates and is regulated by a small RNA in Escherichia coli
    • E regulates and is regulated by a small RNA in Escherichia coli J. Bacteriol. 189 2007 4243 4256
    • (2007) J. Bacteriol. , vol.189 , pp. 4243-4256
    • Thompson, K.M.1
  • 26
    • 4944264194 scopus 로고    scopus 로고
    • GadY, a small-RNA regulator of acid response genes in Escherichia coli
    • J.A. Opdyke GadY, a small-RNA regulator of acid response genes in Escherichia coli J. Bacteriol. 186 2004 6698 6705
    • (2004) J. Bacteriol. , vol.186 , pp. 6698-6705
    • Opdyke, J.A.1
  • 27
    • 0032531904 scopus 로고    scopus 로고
    • The OxyS regulatory RNA represses rpoS translation and binds the Hfq (HF-I) protein
    • A. Zhang The OxyS regulatory RNA represses rpoS translation and binds the Hfq (HF-I) protein EMBO J. 17 1998 6061 6068
    • (1998) EMBO J. , vol.17 , pp. 6061-6068
    • Zhang, A.1
  • 28
    • 18344371528 scopus 로고    scopus 로고
    • A highly conserved 6S RNA structure is required for regulation of transcription
    • A.E. Trotochaud, and K.M. Wassarman A highly conserved 6S RNA structure is required for regulation of transcription Nat. Struct. Mol. Biol. 12 2005 313 319
    • (2005) Nat. Struct. Mol. Biol. , vol.12 , pp. 313-319
    • Trotochaud, A.E.1    Wassarman, K.M.2
  • 29
    • 17844379221 scopus 로고    scopus 로고
    • 6S RNA is a widespread regulator of eubacterial RNA polymerase that resembles an open promoter
    • J.E. Barrick 6S RNA is a widespread regulator of eubacterial RNA polymerase that resembles an open promoter RNA 11 2005 774 784
    • (2005) RNA , vol.11 , pp. 774-784
    • Barrick, J.E.1
  • 30
    • 0034625237 scopus 로고    scopus 로고
    • 6S RNA regulates E. coli RNA polymerase activity
    • K.M. Wassarman, and G. Storz 6S RNA regulates E. coli RNA polymerase activity Cell 101 2000 613 623
    • (2000) Cell , vol.101 , pp. 613-623
    • Wassarman, K.M.1    Storz, G.2
  • 31
    • 3242807381 scopus 로고    scopus 로고
    • 6S RNA function enhances long-term cell survival
    • A.E. Trotochaud, and K.M. Wassarman 6S RNA function enhances long-term cell survival J. Bacteriol. 186 2004 4978 4985
    • (2004) J. Bacteriol. , vol.186 , pp. 4978-4985
    • Trotochaud, A.E.1    Wassarman, K.M.2
  • 32
    • 77952190441 scopus 로고    scopus 로고
    • Legionella pneumophila 6S RNA optimizes intracellular multiplication
    • S.P. Faucher Legionella pneumophila 6S RNA optimizes intracellular multiplication Proc. Natl. Acad. Sci. U. S. A. 107 2010 7533 7538
    • (2010) Proc. Natl. Acad. Sci. U. S. A. , vol.107 , pp. 7533-7538
    • Faucher, S.P.1
  • 34
    • 33745484154 scopus 로고    scopus 로고
    • Control of iron metabolism in Mycobacterium tuberculosis
    • G.M. Rodriguez Control of iron metabolism in Mycobacterium tuberculosis Trends Microbiol. 14 2006 320 327
    • (2006) Trends Microbiol. , vol.14 , pp. 320-327
    • Rodriguez, G.M.1
  • 35
    • 34247092927 scopus 로고    scopus 로고
    • Small RNAs controlling iron metabolism
    • E. Masse Small RNAs controlling iron metabolism Curr. Opin. Microbiol. 10 2007 140 145
    • (2007) Curr. Opin. Microbiol. , vol.10 , pp. 140-145
    • Masse, E.1
  • 36
    • 0035954304 scopus 로고    scopus 로고
    • Novel small RNA-encoding genes in the intergenic regions of Escherichia coli
    • L. Argaman Novel small RNA-encoding genes in the intergenic regions of Escherichia coli Curr. Biol. 11 2001 941 950
    • (2001) Curr. Biol. , vol.11 , pp. 941-950
    • Argaman, L.1
  • 37
    • 0035395606 scopus 로고    scopus 로고
    • Identification of novel small RNAs using comparative genomics and microarrays
    • K.M. Wassarman Identification of novel small RNAs using comparative genomics and microarrays Genes Dev. 15 2001 1637 1651
    • (2001) Genes Dev. , vol.15 , pp. 1637-1651
    • Wassarman, K.M.1
  • 38
    • 0037007078 scopus 로고    scopus 로고
    • A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli
    • E. Masse, and S. Gottesman A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli Proc. Natl. Acad. Sci. U. S. A. 99 2002 4620 4625
    • (2002) Proc. Natl. Acad. Sci. U. S. A. , vol.99 , pp. 4620-4625
    • Masse, E.1    Gottesman, S.2
  • 39
    • 20444473805 scopus 로고    scopus 로고
    • Characterization of the small untranslated RNA RyhB and its regulon in Vibrio cholerae
    • B.M. Davis Characterization of the small untranslated RNA RyhB and its regulon in Vibrio cholerae J. Bacteriol. 187 2005 4005 4014
    • (2005) J. Bacteriol. , vol.187 , pp. 4005-4014
    • Davis, B.M.1
  • 40
    • 51949096025 scopus 로고    scopus 로고
    • Global gene expression as a function of the iron status of the bacterial cell: Influence of differentially expressed genes in the virulence of the human pathogen Vibrio vulnificus
    • A.F. Alice Global gene expression as a function of the iron status of the bacterial cell: influence of differentially expressed genes in the virulence of the human pathogen Vibrio vulnificus Infect. Immun. 76 2008 4019 4037
    • (2008) Infect. Immun. , vol.76 , pp. 4019-4037
    • Alice, A.F.1
  • 41
    • 3042840984 scopus 로고    scopus 로고
    • Identification of tandem duplicate regulatory small RNAs in Pseudomonas aeruginosa involved in iron homeostasis
    • P.J. Wilderman Identification of tandem duplicate regulatory small RNAs in Pseudomonas aeruginosa involved in iron homeostasis Proc. Natl. Acad. Sci. U. S. A. 101 2004 9792 9797
    • (2004) Proc. Natl. Acad. Sci. U. S. A. , vol.101 , pp. 9792-9797
    • Wilderman, P.J.1
  • 42
    • 28244485425 scopus 로고    scopus 로고
    • Fur regulates acid resistance in Shigella flexneri via RyhB and ydeP
    • A.G. Oglesby Fur regulates acid resistance in Shigella flexneri via RyhB and ydeP Mol. Microbiol. 58 2005 1354 1367
    • (2005) Mol. Microbiol. , vol.58 , pp. 1354-1367
    • Oglesby, A.G.1
  • 43
    • 34447254589 scopus 로고    scopus 로고
    • RyhB, an iron-responsive small RNA molecule, regulates Shigella dysenteriae virulence
    • E.R. Murphy, and S.M. Payne RyhB, an iron-responsive small RNA molecule, regulates Shigella dysenteriae virulence Infect. Immun. 75 2007 3470 3477
    • (2007) Infect. Immun. , vol.75 , pp. 3470-3477
    • Murphy, E.R.1    Payne, S.M.2
  • 44
    • 34249777280 scopus 로고    scopus 로고
    • The small RNA RyhB activates the translation of shiA mRNA encoding a permease of shikimate, a compound involved in siderophore synthesis
    • K. Prevost The small RNA RyhB activates the translation of shiA mRNA encoding a permease of shikimate, a compound involved in siderophore synthesis Mol. Microbiol. 64 2007 1260 1273
    • (2007) Mol. Microbiol. , vol.64 , pp. 1260-1273
    • Prevost, K.1
  • 45
    • 33847206046 scopus 로고    scopus 로고
    • Control of fur synthesis by the non-coding RNA RyhB and iron-responsive decoding
    • B. Vecerek Control of Fur synthesis by the non-coding RNA RyhB and iron-responsive decoding EMBO J. 26 2007 965 975
    • (2007) EMBO J. , vol.26 , pp. 965-975
    • Vecerek, B.1
  • 46
    • 23944509113 scopus 로고    scopus 로고
    • Characterization of Vibrio cholerae RyhB: The RyhB regulon and role of ryhB in biofilm formation
    • A.R. Mey Characterization of Vibrio cholerae RyhB: the RyhB regulon and role of ryhB in biofilm formation Infect. Immun. 73 2005 5706 5719
    • (2005) Infect. Immun. , vol.73 , pp. 5706-5719
    • Mey, A.R.1
  • 47
    • 38749084963 scopus 로고    scopus 로고
    • Fur regulates expression of the Salmonella pathogenicity island 1 type III secretion system through HilD
    • J.R. Ellermeier, and J.M. Slauch Fur regulates expression of the Salmonella pathogenicity island 1 type III secretion system through HilD J. Bacteriol. 190 2008 476 486
    • (2008) J. Bacteriol. , vol.190 , pp. 476-486
    • Ellermeier, J.R.1    Slauch, J.M.2
  • 48
    • 0031904825 scopus 로고    scopus 로고
    • The Shigella virulence gene regulatory cascade: A paradigm of bacterial gene control mechanisms
    • C.J. Dorman, and M.E. Porter The Shigella virulence gene regulatory cascade: a paradigm of bacterial gene control mechanisms Mol. Microbiol. 29 1998 677 684
    • (1998) Mol. Microbiol. , vol.29 , pp. 677-684
    • Dorman, C.J.1    Porter, M.E.2
  • 49
    • 33746533172 scopus 로고    scopus 로고
    • Identification of 17 Pseudomonas aeruginosa sRNAs and prediction of sRNA-encoding genes in 10 diverse pathogens using the bioinformatic tool sRNAPredict2
    • J. Livny Identification of 17 Pseudomonas aeruginosa sRNAs and prediction of sRNA-encoding genes in 10 diverse pathogens using the bioinformatic tool sRNAPredict2 Nucleic Acids Res. 34 2006 3484 3493
    • (2006) Nucleic Acids Res. , vol.34 , pp. 3484-3493
    • Livny, J.1
  • 50
    • 52449093583 scopus 로고    scopus 로고
    • High-throughput, kingdom-wide prediction and annotation of bacterial non-coding RNAs
    • J. Livny High-throughput, kingdom-wide prediction and annotation of bacterial non-coding RNAs PLoS One 3 2008 e3197
    • (2008) PLoS One , vol.3 , pp. 3197
    • Livny, J.1
  • 51
    • 44849094549 scopus 로고    scopus 로고
    • Biocomputational prediction of small non-coding RNAs in Streptomyces
    • J. Panek Biocomputational prediction of small non-coding RNAs in Streptomyces BMC Genomics 9 2008 217
    • (2008) BMC Genomics , vol.9 , pp. 217
    • Panek, J.1
  • 52
    • 73849116916 scopus 로고    scopus 로고
    • A search for small noncoding RNAs in Staphylococcus aureus reveals a conserved sequence motif for regulation
    • T. Geissmann A search for small noncoding RNAs in Staphylococcus aureus reveals a conserved sequence motif for regulation Nucleic Acids Res. 37 2009 7239 7257
    • (2009) Nucleic Acids Res. , vol.37 , pp. 7239-7257
    • Geissmann, T.1
  • 53
    • 0036223676 scopus 로고    scopus 로고
    • The poly(C)-binding proteins: A multiplicity of functions and a search for mechanisms
    • A.V. Makeyev, and S.A. Liebhaber The poly(C)-binding proteins: a multiplicity of functions and a search for mechanisms RNA 8 2002 265 278
    • (2002) RNA , vol.8 , pp. 265-278
    • Makeyev, A.V.1    Liebhaber, S.A.2
  • 54
    • 70849119931 scopus 로고    scopus 로고
    • Transcriptome complexity in a genome-reduced bacterium
    • M. Guell Transcriptome complexity in a genome-reduced bacterium Science 326 2009 1268 1271
    • (2009) Science , vol.326 , pp. 1268-1271
    • Guell, M.1
  • 55
    • 67649268395 scopus 로고    scopus 로고
    • The Listeria transcriptional landscape from saprophytism to virulence
    • A. Toledo-Arana The Listeria transcriptional landscape from saprophytism to virulence Nature 459 2009 950 956
    • (2009) Nature , vol.459 , pp. 950-956
    • Toledo-Arana, A.1
  • 56
    • 77949425194 scopus 로고    scopus 로고
    • The primary transcriptome of the major human pathogen Helicobacter pylori
    • C.M. Sharma The primary transcriptome of the major human pathogen Helicobacter pylori Nature 464 2010 250 255
    • (2010) Nature , vol.464 , pp. 250-255
    • Sharma, C.M.1
  • 57
    • 60549089721 scopus 로고    scopus 로고
    • Gene dosage compensation calibrates four regulatory RNAs to control Vibrio cholerae quorum sensing
    • S.L. Svenningsen Gene dosage compensation calibrates four regulatory RNAs to control Vibrio cholerae quorum sensing EMBO J. 28 2009 429 439
    • (2009) EMBO J. , vol.28 , pp. 429-439
    • Svenningsen, S.L.1
  • 58
    • 58849153275 scopus 로고    scopus 로고
    • Translational repression contributes greater noise to gene expression than transcriptional repression
    • M. Komorowski Translational repression contributes greater noise to gene expression than transcriptional repression Biophys. J. 96 2009 372 384
    • (2009) Biophys. J. , vol.96 , pp. 372-384
    • Komorowski, M.1


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