Erratum: Selective cell death mediated by small conditional RNAs (Proceedings of the National Academy of Sciences of the United States of America (2010) 107 (16777-16782) DOI: 10.1073/pnas.1006377107);Selective cell death mediated by small conditional RNAs

Proceedings of the National Academy of Sciences of the United States of America

Volumn 107, Issue 39, 2010, Pages 16777-16782

  Venkataraman, Suvir ^a   Dirks, Robert M ^a,b   Ueda, Christine T ^b   Pierce, Niles A ^a,b  

^a California Institute of Technology   (United States)

^b CALIFORNIA INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

Chemical biology; Hybridization chain reaction; Nucleic acid nanotechnology; Selective PKR activation

Indexed keywords

MESSENGER RNA; RNA; MICRORNA; TUMOR MARKER;

APOPTOSIS; ARTICLE; CANCER CELL; CELL CULTURE; CELL DEATH; CELL DIVISION; CELL SURVIVAL; DNA HAIRPIN; GENE MUTATION; HUMAN; HUMAN CELL; HYBRIDIZATION; INNATE IMMUNITY; POLYMERIZATION; PRIORITY JOURNAL; GENETIC TRANSDUCTION; GENETICS; IMMUNOLOGY; MECHANOTRANSDUCTION; NEOPLASMS; RETRACTED ARTICLE; TUMOR CELL CULTURE;

APOPTOSIS; CELL SURVIVAL; HUMANS; HYBRIDIZATION, GENETIC; IMMUNITY, INNATE; MECHANOTRANSDUCTION, CELLULAR; MICRORNAS; NEOPLASMS; TRANSDUCTION, GENETIC; TUMOR CELLS, CULTURED; TUMOR MARKERS, BIOLOGICAL;

EID: 78049255325     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1221212110     Document Type: Erratum

References (39)

1. Changeaux J-P, Edelstein SJ (2005) Allosteric mechanisms of signal transduction. Science 308:1424-1428.
2. Brunel C, Marquet R, Romby P, Ehresmann C (2002) RNA loop-loop interactions as dynamic functional motifs. Biochimie 84:925-944. (Pubitemid 35422919)
3. Garcia MA, Meurs EF, Esteban M (2007) The dsRNA protein kinase PKR: virus and cell control. Biochimie 89:799-811.
4. Siomi H, Siomi MC (2009) On the road to reading the RNA-interference code. Nature 457:396-404.
5. Simmel FC, Dittmer WU (2005) DNA nanodevices. Small 1:284-299.
6. Bath J, Turberfield AJ (2007) DNA nanomachines. Nat Nanotechnol 2:275-284.
7. Manche L, Green SR, Schmedt C, Mathews MB (1992) Interactions between doublestranded RNA regulators and the protein kinase DAI. Mol Cell Biol 12:5238-5248.
8. Dey M, et al. (2005) Mechanistic link between PKR dimerization, autophosphorylation, and elF2? substrate recognition. Cell 122:901-913. (Pubitemid 41345207)
9. Shir A, Levitzki A (2002) Inhibition of glioma growth by tumor-specific activation of double-stranded RNA-dependent protein kinase PKR. Nat Biotechnol 20:895-900. (Pubitemid 35001126)
10. Friedrich I, Eizenbach M, Sajman J, Ben-Bassat H, Levitzki A (2005) A cellular screening assay to test the ability of PKR to induce cell death in mammalian cells. Mol Ther 12:969-975. (Pubitemid 41614493)
11. Dirks RM, Pierce NA (2004) Triggered amplification by hybridization chain reaction. Proc Natl Acad Sci USA 101:15275-15278.
12. Futreal PA, et al. (2004) A census of human cancer genes. Nat Rev Cancer 4:177-183.
13. Nishikawa R, et al. (1994) A mutant epidermal growth-factor receptor common in human glioma confers enhanced tumorigenicity. Proc Natl Acad Sci USA 91:7727-7731. (Pubitemid 24238258)
14. Kuan CT, Wikstrand CJ, Bigner DD (2001) EGF mutant receptor vIII as a molecular target in cancer therapy. Endocr-Relat Cancer 8:83-96. (Pubitemid 32641351)
15. Veronese ML, Bullrich F, NegriniM, Croce CM (1996) The t(6;16)(p21;q22) chromosome translocation in the LNCaP prostate carcinoma cell line results in a tpc/hpr fusion gene. Cancer Res 56:728-732. (Pubitemid 26055459)
16. Whang-Peng J, et al. (1984) Chromosome translocation in peripheral neuroepithelioma. New Engl J Med 311:584-585.
17. Hu-Lieskovan S, Heidel JD, Bartlett DW, Davis ME, Triche TJ (2005) Sequence-specific knockdown of EWS-FLI1 by targeted, nonviral delivery of small interfering RNA inhibits tumor growth in a murine model of metastatic Ewing's sarcoma. Cancer Res 65:8984-8992. (Pubitemid 41377390)
18. Arvand A, Denny CT (2001) Biology of EWS/ETS fusions in Ewing's family tumors. Oncogene 20:5747-5754. (Pubitemid 32928112)
19. Yurke B, Turberfield AJ, Mills AP, Jr, Simmel FC, Neumann JL (2000) A DNA-fuelled molecular machine made of DNA. Nature 406:605-608. (Pubitemid 30641042)
20. Venkataraman S, Dirks RM, Rothemund PWK, Winfree E, Pierce NA (2007) An autonomous polymerization motor powered by DNA hybridization. Nat Nanotechnol 2:490-494. (Pubitemid 47220071)
21. Nagane M, et al. (1996) A common mutant epidermal growth factor receptor confers enhanced tumorigenicity on human glioblastoma cells by increasing proliferation and reducing apoptosis. Cancer Res 56:5079-5086. (Pubitemid 26374452)
22. Zhang F, et al. (2001) Binding of double-stranded RNA to protein kinase PKR is required for dimerization and promotes critical autophosphorylation events in the activation loop. J Biol Chem 276:24946-24958. (Pubitemid 37412968)
23. Scheuner D, et al. (2006) Double-stranded RNA-dependent protein kinase phosphorylation of the alpha-subunit of eukaryotic translation initiation factor 2 mediates apoptosis. J Biol Chem 281:21458-21468. (Pubitemid 44115484)
24. Hu YH, Conway TW (1993) 2-Aminopurine inhibits the double-stranded RNA-dependent protein-kinase both in vitro and in vivo. J Interferon Res 13:323-328.
25. Thomis DC, Samuel CE (1993) Mechanism of interferon action - evidence for intermolecular autophosphorylation and autoactivation of the interferon-induced, RNA-dependent protein-kinase PKR. J Virol 67:7695-7700.
26. Kaufman RJ, Murtha P (1987) Translational control mediated by eukaryotic initiation factor-2 is restricted to specific mRNAs in transfected cells. Mol Cell Biol 7:1568-1571.
27. Zinn K, Keller A, Whittemore LA, Maniatis T (1988) 2-Aminopurine selectively inhibits the induction of β-interferon, c- fos, and c- mycgene expression. Science 240:210-213.
28. Samuel CE, Brody MS (1990) Biosynthesis of reovirus-specified polypeptides - 2-Aminopurine increases the efficiency of translation of reovirus s1 mRNA but not s4 mRNA in transfected cells. Virology 176:106-113.
29. Samuel CE (1992) Role of the RNA-dependent protein-kinase in the regulated expression of genes in transfected cells. Pharmacol Ther 54:307-317.
30. Osman F, Jarrous N, Ben-Asouli Y, Kaempfer R (1999) A cis-acting element in the 3′-untranslated region of human TNF-α mRNA renders splicing dependent on the activation of protein kinase PKR. Genes Dev 13:3280-3293. (Pubitemid 30030449)
31. Huang S, et al. (2003) Protein kinase inhibitor 2-aminopurine overrides multiple genotoxic stress-induced cellular pathways to promote cell survival. Oncogene 22:3721-3733. (Pubitemid 36760734)
32. Diaz-Guerra M, Rivas C, Esteban M (1997) Activation of the IFN-inducible enzyme RNase L causes apoptosis of animal cells. Virology 236:354-363. (Pubitemid 27423778)
33. Herrmann M, et al. (1994) A rapid and simple method for the isolation of apoptotic DNA fragments. Nucleic Acids Res 22:5506-5507.
34. Galluzzi L, et al. (2009) Guidelines for the use and interpretation of assays for monitoring cell death in higher eukaryotes. Cell Death Differ 16:1093-1107.
35. Aagaard L, Rossi JJ (2007) RNAi therapeutics: principles, prospects, and challenges. Adv Drug Deliver Rev 59:75-86. (Pubitemid 46770900)
36. Castanotto D, Rossi JJ (2009) The promises and pitfalls of RNA-interference-based therapeutics. Nature 457:426-433.
37. Fire A, et al. (1998) Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature 391:806-811. (Pubitemid 28099681)
38. Davis ME, et al. (2010) Evidence of RNAi in humans from systemically administered siRNA via targeted nanoparticles. Nature 464:1067-1070.
39. Dias-Santagata D, et al. (2010) Rapid targeted mutational analysis of human tumors: a clinical platform to guide personalized cancer medicine. EMBO Molecular Medicine 2:146-158.