Survival of phosphate-solubilizing bacteria against DNA damaging agents

Canadian Journal of Microbiology

Volumn 56, Issue 10, 2010, Pages 822-830

  Shrivastava, Manoj ^a   Rajpurohit, Yogendra S ^a   Misra, Hari S ^a   D'Souza, S F ^a  

^a BHABHA ATOMIC RESEARCH CENTRE   (India)

Author keywords

DNA damaging agents; Gluconic acid; Phosphate solubilizing bacteria; Pyrroloquinoline quinone

Indexed keywords

ABIOTIC STRESS; AGRO-ECOLOGICAL REGIONS; BACTERIAL ISOLATES; COFACTORS; DEINOCOCCUS RADIODURANS; DNA DAMAGES; DNA DAMAGING AGENTS; E. COLI; GLUCONIC ACIDS; INORGANIC PHOSPHATES; MITOMYCIN C; PHOSPHATE STARVATION; PYRROLOQUINOLINE QUINONE; RHIZOSPHERE SOILS; TRI-CALCIUM PHOSPHATES;

DNA; ESCHERICHIA COLI; PHOSPHORUS; SOILS;

BACTERIOLOGY;

CALCIUM PHOSPHATE; GLUCONIC ACID; MITOMYCIN C; PHOSPHATE; PHOSPHORUS; PYRROLOQUINOLINEQUINONE;

AGROECOLOGY; BACTERIUM; DNA; ORGANIC ACID; PHOSPHATE; PHOSPHORUS; REDOX CONDITIONS; RHIZOSPHERE; SOIL TYPE; SPECIES DIVERSITY; SURVIVAL; TOLERANCE; ULTRAVIOLET RADIATION;

ABIOTIC STRESS; ANIMAL CELL; ANIMAL EXPERIMENT; ARTICLE; BACTERIAL GROWTH; BACTERIUM; BACTERIUM ISOLATE; CELL SURVIVAL; CONTROLLED STUDY; DEINOCOCCUS RADIODURANS; DNA DAMAGE; ESCHERICHIA COLI; HEAT TOLERANCE; NONHUMAN; NUCLEOTIDE SEQUENCE; OXIDATIVE STRESS; PHOSPHATE METABOLISM; PHOSPHATE SOLUBILIZING BACTERIA; PRIORITY JOURNAL; SYNTHESIS; ULTRAVIOLET C RADIATION;

BURKHOLDERIA CEPACIA; CALCIUM PHOSPHATES; CATALASE; DNA DAMAGE; ENTEROBACTER; ENTEROBACTERIACEAE; GLUCONATES; INDIA; MITOMYCIN; OXIDATIVE STRESS; PANTOEA; PHOSPHATES; POLYMERASE CHAIN REACTION; PQQ COFACTOR; PROTEUS MIRABILIS; PSEUDOMONAS OLEOVORANS; RADIATION TOLERANCE; RHIZOSPHERE; SOIL MICROBIOLOGY; ULTRAVIOLET RAYS;

INDIA;

BACTERIA (MICROORGANISMS); DEINOCOCCUS RADIODURANS; ESCHERICHIA COLI;

EID: 77958528597     PISSN: 00084166     EISSN: 14803275     Source Type: Journal    
DOI: 10.1139/W10-067     Document Type: Article

References (43)

1. Ahuja, A., Ghosh, S.B., and D'Souza, S.F. 2007. Isolation of a starch utilizing, phosphate solubilizing fungus on buffered medium and its characterization. Bioresour. Tech. 98(17): 3408-3411. doi:10.1016/j.biortech.2006.10.041.
2. Altschul, S.F., Madden, T.L., Schäffer, A.A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D.J. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25(17): 3389-3402. doi:10.1093/nar/25.17. 3389. PMID:9254694.
3. Arrage, A.A., Phelps, T.J., Benoit, R.E., and White, D.C. 1993. Survival of subsurface microorganisms exposed to UV radiation and hydrogen peroxide. Appl. Environ. Microbiol. 59(11): 3545-3550. PMID:8285661.
4. Babu-Khan, S., Yeo, T.C., Martin, W.L., Duron, M.R., Rogers, R.D., and Goldstein, A.H. 1995. Cloning of a mineral phosphate-solubilizing gene from Pseudomonas cepacia. Appl. Environ. Microbiol. 61(3): 972-978. PMID:7540821.
5. Battista, J.R., Park, M.J., and McLemore, A.E. 2001. Inactivation of two homologous of proteins presumed to be involved in the desiccation tolerance of plants sensitizes Deinococcus radiodurans R1 to desiccation. Cryobiology, 42: 33-39.
6. Beers, R.F., Jr., and Sizer, I.W. 1951. A spectrophotometric method for measuring the breakdown of hydrogen peroxide by catalase. J. Biol. Chem. 159: 133-140.
7. Blattner, F.R., Plunkett, G., 3rd, Bloch, C.A., Perna, N.T., Burland, V., Riley, M., et al. 1997. The complete genome sequence of Escherichia coli K-12. Science (Washington, D.C.), 277(5331): 1453-1462. doi:10.1126/science.277.5331.1453. PMID:9278503.
8. Cadet, J., Sage, E., and Douki, T. 2005. Ultraviolet radiation-mediated damage to cellular DNA. Mutat. Res. 571(1-2): 3-17. PMID:15748634.
9. Chang, W., Small, D.A., Toghrol, F., and Bentley, W.E. 2005. Microarray analysis of Pseudomonas aeruginosa reveals induction of pyocin genes in response to hydrogen peroxide. BMC Genomics, 6(1): 115-129. doi:10.1186/1471-2164-6-115. PMID:16150148.
10. Chen, Y.P., Rekha, P.D., Arun, A.B., Shen, F.T., Lai, W.A., and Young, C.C. 2006. Phosphate solubilizing bacteria from subtropical and their tricalcium phosphate solubilizing abilities. Appl. Soil Ecol. 34(1): 33-41. doi:10.1016/j.apsoil.2005.12.002.
11. Cox, M.M., Goodman, M.F., Kreuzer, K.N., Sherratt, D.J., Sandler, S.J., and Marians, K.J. 2000. The importance of repairing stalled replication forks. Nature (Lond.), 404(6773): 37-41. doi:10.1038/35003501. PMID:10716434.
12. Finkel, T., and Holbrook, N.J. 2000. Oxidants, oxidative stress and the biology of ageing. Nature (Lond.), 408(6809): 239-247. doi:10.1038/35041687. PMID:11089981.
13. Garinis, G.A., Mitchell, J.R., Moorhouse, M.J., Hanada, K., de Waard, H., Vandeputte, D., et al. 2005. Transcriptome analysis reveals cyclobutane pyrimidine dimers as a major source of UV-induced DNA breaks. EMBO J. 24(22): 3952-3962. doi:10. 1038/sj.emboj.7600849. PMID:16252008.
14. Goldstein, A.H. 1994. Involvement of the quinoprotein glucose dehydrogenase in the solubilization of exogenous phosphates by gram-negative bacteria. In Phosphates in microorganisms: cellular and molecular biology. Edited by A. Torriani-Gorini, E. Yagil, and S. Silver. ASM Press, Washington, D.C. pp.197-203.
15. Goldstein, A., and Liu, S.T. 1987. Molecular cloning and regulation of a mineral phosphate solubilizing gene from Erwinia herbicola. Biotechnology, 5(1): 72-74. doi:10.1038/nbt0187-72.
16. He, K., Nukada, H.T., Urakami, T., and Murphy, M.P. 2003. Antioxidant and pro-oxidant properties of pyrroloquinoline quinone (PQQ): implications for its function in biological systems. Biochem. Pharmacol. 65(1): 67-74. doi:10.1016/S0006-2952(02)01453-3. PMID:12473380.
17. Hinsinger, P., Plassard, C., Tang, C., and Jaillard, B. 2003. Origins of root-mediated pH changes in the rhizosphere and their responses to environmental constraints: a review. Plant Soil, 248(1-2): 43-59. doi:10.1023/A:1022371130939.
18. Keller, K.L., Overbeck-Carrick, T.L., and Beck, D.J. 2001. Survival and induction of SOS in Escherichia coli treated with cisplatin, UV-irradiation, or mitomycin C are dependent on the function of the RecBC and RecFOR pathways of homologous recombination. Mutat. Res. 486(1): 21-29. PMID:11356333.
19. Khairnar, N.P., Misra, H.S., and Apte, S.K. 2003. Pyrroloquinoline quinone synthesized in Escherichia coli by pyrroloquinoline quinone synthase of Deinococcus radiodurans plays a role beyond mineral phosphate solubilization. Biochem. Biophys. Res. Commun. 312(2): 303-308. doi:10.1016/j.bbrc.2003.10.121. PMID: 14637137.
20. Khairnar, N.P., Kamble, V.A., Mangoli, S.H., Apte, S.K., and Misra, H.S. 2007. Involvement of a periplasmic protein kinase in DNA strand break repair and homologous recombination in Escherichia coli. Mol. Microbiol. 65(2): 294-304. doi:10.1111/ j.1365-2958.2007.05779.x. PMID:17630970.
21. Kota, S., and Misra, H.S. 2006. PprA: A protein implicated in radioresistance of Deinococcus radiodurans stimulates catalase activity in Escherichia coli. Appl. Microbiol. Biotechnol. 72(4): 790-796. doi:10.1007/s00253-006-0340-7. PMID:16586106.
22. Kumazawa, T., Hiwasa, T., Takiguchi, M., Suzuki, O., and Sato, K. 2007. Activation of Ras signaling pathways by pyrroloquinoline quinone in NIH3T3 mouse fibroblasts. Int. J. Mol. Med. 19(5): 765-770. PMID:17390081.
23. Lowry, O.H., Rosebrough, N.J., Farr, A.L., and Randall, R.J. 1951. Protein measurement with the Folin phenol reagent. J. Biol. Chem. 193(1): 265-275. PMID:14907713.
24. Misra, H.S., and Tuli, R. 2000. Differential expression of photosynthesis and nitrogen fixation genes in the cyanobacterium Plectonema boryanum. Plant Physiol. 122(3): 731-736. doi:10. 1104/pp.122.3.731. PMID:10712536.
25. Misra, H.S., Khairnar, N.P., Barik, A., Indira Priyadarsini, K., Mohan, H., and Apte, S.K. 2004. Pyrroloquinoline-quinone: a reactive oxygen species scavenger in bacteria. FEBS Lett. 578(1-2): 26-30. doi:10.1016/j.febslet.2004.10.061. PMID:15581610.
26. Murphy, J., and Riley, J.P. 1962. A modified single solution method for determination of phosphate in natural waters. Anal. Chim. Acta, 27: 31-36. doi:10.1016/S0003-2670(00)88444-5.
27. Niedernhofer, L.J., Odijk, H., Budzowska, M., van Drunen, E., Maas, A., Theil, A.F., et al. 2004. The structure-specific endonuclease Ercc1-Xpf is required to resolve DNA interstrand cross-link-induced double-strand breaks. Mol. Cell. Biol. 24(13):5776-5787. doi:10.1128/MCB.24.13.5776-5787.2004. PMID: 15199134.
28. Oppezzo, O.J., and Pizarro, R.A. 2001. Sublethal effects of ultraviolet A radiation on Enterobacter cloacae. J. Photochem. Photobiol.B: Biology, 62(3): 158-165. doi:10.1016/S1011-1344(01)00180-4.
29. Parkinson, J.S. 1993. Signal transduction schemes of bacteria. Cell, 73(5): 857-871. doi:10.1016/0092-8674(93)90267-T. PMID:8098993.
30. Pausz, C., and Herndl, G.J. 2002. Role of nitrogen versus phosphorus availability on the effect of UV radiation on bacterio-plankton and their recovery from previous UV stress. Aquat. Microb. Ecol. 29: 89-95. doi:10.3354/ame029089.
31. Pérez, E., Sulbarán, M., Ball, M.M., and Yarzábal, L.A. 2007. Isolation and characterization of mineral phosphate-solubilizing bacteria naturally colonizing a limonitic crust in the south-eastern Venezuelan region. Soil Biol. Biochem. 39(11): 2905-2914. doi:10.1016/j.soilbio.2007.06.017.
32. Pikovskaya, R.I. 1948. Mobilization of phosphorus in soil in connection with vital activity of some microbial species. Microbiologiia, 17: 362-370.
33. Rajpurohit, Y.S., Gopalakrishnan, R., and Misra, H.S. 2008. Involvement of a protein kinase activity inducer in DNA double strand break repair and radioresistance of Deinococcus radiodurans. J. Bacteriol. 190(11): 3948-3954. doi:10.1128/JB.00026-08. PMID:18375565.
34. Richardson, A.E. 2001. Prospects for using soil microorganisms to improve the acquisition of phosphorus by plants. Aust. J. Plant Physiol. 28: 897-906.
35. Rodríguez, H., and Fraga, R. 1999. Phosphate solubilizing bacteria and their role in plant growth promotion. Biotechnol. Adv. 17(4-5): 319-339. doi:10.1016/S0734-9750(99)00014-2. PMID: 14538133.
36. Sambrook, J., and Russell, D.W. 2001. Molecular cloning: a laboratory manual. 3rd ed. Cold Spring Harbor Laboratory Press, Woodbury, N.Y.
37. Seshadri, S., Ignacimuthu, S., and Lakshminarsimhan, C. 2002. Variation in heterotrophic bacteria from Chennai, southeast coast of India. Indian J. Mar. Sci. 31: 69-72.
38. Shashidhar, R., Kumar, S.A., Misra, H.S., and Bandekar, J.R. 2010. Evaluation of the role of enzymatic and nonenzymatic antioxidant systems in the radiation resistance of Deinococcus. Can. J. Microbiol. 56(3): 195-201. doi:10.1139/W09-118. PMID:20453905.
39. Vidal, L.S., Santos, L.B., Lage, C., and Leitão, A.C. 2006. Enhanced sensitivity of Escherichia coli uvrB mutants to mitomycin C points to a UV-C distinct repair for DNA adducts. Chem. Res. Toxicol. 19(10): 1351-1356. doi:10.1021/tx060035y.PMID:17040104.
40. Vora, M.S., and Shelat, H.N. 1998. Impact of addition of different carbon and nitrogen sources on solubilization of rock phosphate by phosphate-solubilizing micro-organisms. Indian J. Agric. Sci. 68: 292-294.
41. White, O., Eisen, J.A., Heidelberg, J.F., Hickey, E.K., Peterson, J.D., Dodson, R.J., et al. 1999. Genome sequence of the radioresistant bacterium Deinococcus radiodurans R1. Science (Washington, D.C.), 286(5444): 1571-1577. doi:10.1126/science.286.5444.1571. PMID:10567266.
42. Zhang, S., and Sundin, G.W. 2004. Mutagenic DNA repair potential in Pseudomonas spp., and characterization of the rulABPc operon from the highly mutable strain Pseudomonas cichorii 302959. Can. J. Microbiol. 50(1): 29-39. doi:10.1139/w03-105. PMID:15052319.
43. Zheng, S.J., Yang, J.L., He, Y.F., Yu, X.H., Zhang, L., You, J.F., et al. 2005. Immobilization of aluminum with phosphorus in roots is associated with high aluminum resistance in buckwheat. Plant Physiol. 138(1): 297-303. doi:10.1104/pp.105.059667. PMID:15863697.