-
1
-
-
0345851236
-
Amorphous computing
-
Abelson H, Allen D, Coore D, Hanson C, Homsy G, Knight TF Jr, Nagpal R, Rauch E, Sussman GJ, Weiss R (2000) Amorphous computing. Commun ACM 43(5): 74-82.
-
(2000)
Commun ACM
, vol.43
, Issue.5
, pp. 74-82
-
-
Abelson, H.1
Allen, D.2
Coore, D.3
Hanson, C.4
Homsy, G.5
Knight Jr., T.F.6
Nagpal, R.7
Rauch, E.8
Sussman, G.J.9
Weiss, R.10
-
2
-
-
1842526004
-
Self-porating polymersomes of peg-pla and peg-pcl: hydrolysis-triggered controlled release vesicles
-
doi:10.1016/j.jconrel.2003.12.021
-
Ahmed F, Discher DE (2004) Self-porating polymersomes of peg-pla and peg-pcl: hydrolysis-triggered controlled release vesicles. J Control Release 96(1): 37-53. doi: 10. 1016/j. jconrel. 2003. 12. 021.
-
(2004)
J Control Release
, vol.96
, Issue.1
, pp. 37-53
-
-
Ahmed, F.1
Discher, D.E.2
-
4
-
-
29344436772
-
-
M. Amos (Ed.), Oxford: Oxford University Press
-
Amos M (ed) (2004) Cellular computing. Oxford University Press, Oxford.
-
(2004)
Cellular Computing
-
-
-
6
-
-
67650035485
-
Hydrogel logic gates using gradient semi-ipns
-
Asoh Ta, Akashi M (2009) Hydrogel logic gates using gradient semi-ipns. Chem Commun 24(24): 3548-3550.
-
(2009)
Chem Commun
, vol.24
, Issue.24
, pp. 3548-3550
-
-
Asoh, T.1
Akashi, M.2
-
7
-
-
2342578714
-
Spatiotemporal control of gene expression with pulse-generating networks
-
nR
-
Basu S, Mehreja R, Thiberge S, Chen MT, Weiss R (2004) Spatiotemporal control of gene expression with pulse-generating networks. Proc Natl Acad Sci 101(17): 6355-6360.
-
(2004)
Proc Natl Acad Sci
, vol.101
, Issue.17
, pp. 6355-6360
-
-
Basu, S.1
Mehreja, R.2
Thiberge, S.3
Chen, M.T.4
Weiss, R.5
-
8
-
-
17844374314
-
A synthetic multicellular system for programmed pattern formation
-
Basu S, Gerchman Y, Collins CH, Arnold FH, Weiss R (2005) A synthetic multicellular system for programmed pattern formation. Nature 434(7037): 1130-1134.
-
(2005)
Nature
, vol.434
, Issue.7037
, pp. 1130-1134
-
-
Basu, S.1
Gerchman, Y.2
Collins, C.H.3
Arnold, F.H.4
Weiss, R.5
-
9
-
-
68849100911
-
Solving a hamiltonian path problem with a bacterial computer
-
Baumgardner J, Acker K, Adefuye O, Crowley S, DeLoache W, Dickson J, Heard L, Martens A, Morton N, Ritter M, Shoecraft A, Treece J, Unzicker M, Valencia A, Waters M, Campbell A, Heyer L, Poet J, Eckdahl T (2009) Solving a hamiltonian path problem with a bacterial computer. J Biol Eng 3(1): 11.
-
(2009)
J Biol Eng
, vol.3
, Issue.1
, pp. 11
-
-
Baumgardner, J.1
Acker, K.2
Adefuye, O.3
Crowley, S.4
Deloache, W.5
Dickson, J.6
Heard, L.7
Martens, A.8
Morton, N.9
Ritter, M.10
Shoecraft, A.11
Treece, J.12
Unzicker, M.13
Valencia, A.14
Waters, M.15
Campbell, A.16
Heyer, L.17
Poet, J.18
Eckdahl, T.19
-
10
-
-
33749868936
-
The imitation game-a computational chemical approach to recognizing life
-
Cronin L, Krasnogor N, Davis BG, Alexander C, Robertson N, Steinke JHG, Schroeder SLM, Khlobystov AN, Cooper G, Gardner PM, Siepmann P, Whitaker BJ, Marsh D (2006) The imitation game-a computational chemical approach to recognizing life. Nat Biotechnol 24(10): 1203-1206.
-
(2006)
Nat Biotechnol
, vol.24
, Issue.10
, pp. 1203-1206
-
-
Cronin, L.1
Krasnogor, N.2
Davis, B.G.3
Alexander, C.4
Robertson, N.5
Steinke, J.H.G.6
Schroeder, S.L.M.7
Khlobystov, A.N.8
Cooper, G.9
Gardner, P.M.10
Siepmann, P.11
Whitaker, B.J.12
Marsh, D.13
-
11
-
-
34447275457
-
Molecular logic and computing
-
de Silva AP, Uchiyama S (2007) Molecular logic and computing. Nat Nano 2(7): 399-410.
-
(2007)
Nat Nano
, vol.2
, Issue.7
, pp. 399-410
-
-
de Silva, A.P.1
Uchiyama, S.2
-
12
-
-
0034688173
-
A synthetic oscillatory network of transcriptional regulators
-
nR
-
Elowitz MB, Leibler S (2000) A synthetic oscillatory network of transcriptional regulators. Nature 403(6767): 335-338.
-
(2000)
Nature
, vol.403
, Issue.6767
, pp. 335-338
-
-
Elowitz, M.B.1
Leibler, S.2
-
13
-
-
28544451327
-
Foundations for engineering biology
-
nR
-
Endy D (2005) Foundations for engineering biology. Nature 438(7067): 449-453.
-
(2005)
Nature
, vol.438
, Issue.7067
, pp. 449-453
-
-
Endy, D.1
-
14
-
-
84956259119
-
Statistical-mechanics of dissipative particle dynamics
-
Español P, Warren P (1995) Statistical-mechanics of dissipative particle dynamics. Europhys Lett 30: 191-196.
-
(1995)
Europhys Lett
, vol.30
, pp. 191-196
-
-
Español, P.1
Warren, P.2
-
16
-
-
69249174873
-
Sugar synthesis in a protocellular model leads to a cell signalling response in bacteria
-
Gardner P, Winzer K, Davis B (2009) Sugar synthesis in a protocellular model leads to a cell signalling response in bacteria. Nat Chem 1: 377-383.
-
(2009)
Nat Chem
, vol.1
, pp. 377-383
-
-
Gardner, P.1
Winzer, K.2
Davis, B.3
-
17
-
-
34249950625
-
Stochastic simulation of chemical kinetics
-
Gillespie DT (2007) Stochastic simulation of chemical kinetics. Annu Rev Phys Chem 58: 35-55.
-
(2007)
Annu Rev Phys Chem
, vol.58
, pp. 35-55
-
-
Gillespie, D.T.1
-
18
-
-
0034909360
-
Mesoscopic simulation of cell membrane damage, morphology change and rupture by nonionic surfactants
-
Groot RD, Rabone KL (2001) Mesoscopic simulation of cell membrane damage, morphology change and rupture by nonionic surfactants. Biophys J 81: 725-736.
-
(2001)
Biophys J
, vol.81
, pp. 725-736
-
-
Groot, R.D.1
Rabone, K.L.2
-
19
-
-
5544242655
-
Dissipative particle dynamics: bridging the gap between atomistic and mesoscopic simulation
-
Groot RD, Warren PB (1997) Dissipative particle dynamics: bridging the gap between atomistic and mesoscopic simulation. J Chem Phys 107(11): 4423-4435.
-
(1997)
J Chem Phys
, vol.107
, Issue.11
, pp. 4423-4435
-
-
Groot, R.D.1
Warren, P.B.2
-
20
-
-
0343920680
-
Luminescent molecular logic gates: the two-input inhibit (inh) function
-
Gunnlaugsson T, Donail DAM, Parker D (2000) Luminescent molecular logic gates: the two-input inhibit (inh) function. Chem Commun 1(1): 93-94.
-
(2000)
Chem Commun
, vol.1
, Issue.1
, pp. 93-94
-
-
Gunnlaugsson, T.1
Donail, D.A.M.2
Parker, D.3
-
22
-
-
33751013018
-
Synthetic biology-putting engineering into biology
-
Heinemann M, Panke S (2006) Synthetic biology-putting engineering into biology. Bioinformatics 22(22): 2790-2799.
-
(2006)
Bioinformatics
, vol.22
, Issue.22
, pp. 2790-2799
-
-
Heinemann, M.1
Panke, S.2
-
23
-
-
60649114699
-
Polymersome delivery of sirna and antisense oligonucleotides
-
doi:10.1016/j.jconrel.2008.10.020
-
Kim Y, Tewari M, Pajerowski JD, Cai S, Sen S, Williams J, Sirsi S, Lutz G, Discher DE (2009) Polymersome delivery of sirna and antisense oligonucleotides. J Control Release 134(2): 132-140. doi: 10. 1016/j. jconrel. 2008. 10. 020.
-
(2009)
J Control Release
, vol.134
, Issue.2
, pp. 132-140
-
-
Kim, Y.1
Tewari, M.2
Pajerowski, J.D.3
Cai, S.4
Sen, S.5
Williams, J.6
Sirsi, S.7
Lutz, G.8
Discher, D.E.9
-
25
-
-
4444262034
-
Comparison of mesoscopic phospholipid-water models
-
Kranenburg M, Nicolas JP, Smit B (2004) Comparison of mesoscopic phospholipid-water models. Phys Chem Chem Phys 6(16): 4142-4151.
-
(2004)
Phys Chem Chem Phys
, vol.6
, Issue.16
, pp. 4142-4151
-
-
Kranenburg, M.1
Nicolas, J.P.2
Smit, B.3
-
28
-
-
37149028461
-
Biomimetic ph sensitive polymersomes for efficient dna encapsulation and delivery
-
10. 1002/adma. 200700941
-
Lomas H, Canton I, MacNeil S, Du J, Armes S, Ryan A, Lewis A, Battaglia G (2007) Biomimetic ph sensitive polymersomes for efficient dna encapsulation and delivery. Adv Mater 19(23): 4238-4243. 10. 1002/adma. 200700941.
-
(2007)
Adv Mater
, vol.19
, Issue.23
, pp. 4238-4243
-
-
Lomas, H.1
Canton, I.2
MacNeil, S.3
Du, J.4
Armes, S.5
Ryan, A.6
Lewis, A.7
Battaglia, G.8
-
29
-
-
31344455122
-
Approaches to semi-synthetic minimal cells: a review
-
Luisi P, Ferri F, Stano P (2006) Approaches to semi-synthetic minimal cells: a review. Naturwissenschaften 93(1): 1-13.
-
(2006)
Naturwissenschaften
, vol.93
, Issue.1
, pp. 1-13
-
-
Luisi, P.1
Ferri, F.2
Stano, P.3
-
30
-
-
67650479404
-
Sequential treatment of drug-resistant tumors with targeted minicells containing sirna or a cytotoxic drug
-
MacDiarmid J, Amaro-Mugridge N, Madrid-Weiss J, Sedliarou I, Wetzel S, Kochar K, Brahmbhatt V, Phillips L, Pattison S, Petti C, Stillman B, Graham R, Brahmbhatt H (2009) Sequential treatment of drug-resistant tumors with targeted minicells containing sirna or a cytotoxic drug. Nat Biotechnol 27(7): 643-651.
-
(2009)
Nat Biotechnol
, vol.27
, Issue.7
, pp. 643-651
-
-
Macdiarmid, J.1
Amaro-Mugridge, N.2
Madrid-Weiss, J.3
Sedliarou, I.4
Wetzel, S.5
Kochar, K.6
Brahmbhatt, V.7
Phillips, L.8
Pattison, S.9
Petti, C.10
Stillman, B.11
Graham, R.12
Brahmbhatt, H.13
-
31
-
-
61849134936
-
A fluorescent and logic gate driven by electrons and protons
-
Magri DC (2009) A fluorescent and logic gate driven by electrons and protons. New J Chem 33(3): 457-461.
-
(2009)
New J Chem
, vol.33
, Issue.3
, pp. 457-461
-
-
Magri, D.C.1
-
32
-
-
64549144670
-
Programming with models: modularity and abstraction provide powerful capabilities for system biology
-
Mallavarapu A, Thomson M, Ullian B, Gunawardena J (2009) Programming with models: modularity and abstraction provide powerful capabilities for system biology. J R Soc Interface 6: 257-270.
-
(2009)
J R Soc Interface
, vol.6
, pp. 257-270
-
-
Mallavarapu, A.1
Thomson, M.2
Ullian, B.3
Gunawardena, J.4
-
33
-
-
64149094873
-
Stimuli-responsive polymersomes for programmed drug delivery
-
10. 1021/bm801127d
-
Meng F, Zhong Z, Feijen J (2009) Stimuli-responsive polymersomes for programmed drug delivery. Biomacromolecules 10(2): 197-209 10. 1021/bm801127d.
-
(2009)
Biomacromolecules
, vol.10
, Issue.2
, pp. 197-209
-
-
Meng, F.1
Zhong, Z.2
Feijen, J.3
-
34
-
-
11144220854
-
A vesicle bioreactor as a step toward an artificial cell assembly
-
Noireaux V, Libchaber A (2004) A vesicle bioreactor as a step toward an artificial cell assembly. PNAS 101(51): 17669-17674.
-
(2004)
Pnas
, vol.101
, Issue.51
, pp. 17669-17674
-
-
Noireaux, V.1
Libchaber, A.2
-
35
-
-
48849091039
-
Sweet talking double hydrophilic block copolymer vesicles
-
Pasparakis G, Alexander C (2008) Sweet talking double hydrophilic block copolymer vesicles. Angew Chem Int Ed Engl 47(26): 4847-4850.
-
(2008)
Angew Chem Int Ed Engl
, vol.47
, Issue.26
, pp. 4847-4850
-
-
Pasparakis, G.1
Alexander, C.2
-
36
-
-
77949896156
-
Controlled polymer synthesis-from biomimicry towards synthetic biology
-
(in press). doi: 10. 1039/B809333B
-
Pasparakis G, Krasnogor N, Cronin L, Davis B, Alexander C (2009a) Controlled polymer synthesis-from biomimicry towards synthetic biology. Chem Soc Rev (in press). doi: 10. 1039/B809333B.
-
(2009)
Chem Soc Rev
-
-
Pasparakis, G.1
Krasnogor, N.2
Cronin, L.3
Davis, B.4
Alexander, C.5
-
37
-
-
77954816687
-
Diol-boronic acid complexes integrated by responsive polymers-a route to chemical sensing and logic operations
-
(in press). doi: 10. 1039/b911341
-
Pasparakis G, Vamvakaki M, Krasnogor N, Alexander C (2009b) Diol-boronic acid complexes integrated by responsive polymers-a route to chemical sensing and logic operations. Soft Matter (in press). doi: 10. 1039/b911341.
-
(2009)
Soft Matter
-
-
Pasparakis, G.1
Vamvakaki, M.2
Krasnogor, N.3
Alexander, C.4
-
38
-
-
38049050864
-
P systems, a new computational modelling tool for systems biology
-
Pérez-Jiménez MJ, Romero-Campero FJ (2006) P systems, a new computational modelling tool for systems biology. Trans Comput Syst Biol VI: 176-197.
-
(2006)
Trans Comput Syst Biol
, vol.VI
, pp. 176-197
-
-
Pérez-Jiménez, M.J.1
Romero-Campero, F.J.2
-
39
-
-
34250755396
-
Chemical approaches to molecular logic elements for addition and subtraction
-
Pischel U (2007) Chemical approaches to molecular logic elements for addition and subtraction. Angew Chem Int Ed 46(22): 4026-4040.
-
(2007)
Angew Chem Int Ed
, vol.46
, Issue.22
, pp. 4026-4040
-
-
Pischel, U.1
-
40
-
-
67049143968
-
Algorithmic systems biology
-
Priami C (2009) Algorithmic systems biology. Commun ACM 52(5): 80-88.
-
(2009)
Commun ACM
, vol.52
, Issue.5
, pp. 80-88
-
-
Priami, C.1
-
42
-
-
56949106006
-
-
S. Rasmussen, M. A. Bedau, L. Chen, D. Deamer, D. C. Krakauer, N. H. Packard, and P. F. Stadler (Eds.), Cambridge: MIT Press
-
Rasmussen S, Bedau MA, Chen L, Deamer D, Krakauer DC, Packard NH, Stadler PF (eds) (2008) Protocells: bridging nonliving and living matter. MIT Press, Cambridge.
-
(2008)
Protocells: Bridging Nonliving and Living Matter
-
-
-
43
-
-
57349119885
-
Structure and parameter estimation for cell systems biology models
-
ACM Publisher
-
Romero-Campero FJ, Cao H, Camara M, Krasnogor N (2008) Structure and parameter estimation for cell systems biology models. In: Proceedings of the Genetic and Evolutionary Computation Conference (GECCO-2008), ACM Publisher, pp 331-338.
-
(2008)
Proceedings of the Genetic and Evolutionary Computation Conference (GECCO-2008)
, pp. 331-338
-
-
Romero-Campero, F.J.1
Cao, H.2
Camara, M.3
Krasnogor, N.4
-
44
-
-
67650242026
-
Modular assembly of cell systems biology models using p systems
-
Romero-Campero FJ, Twycross J, Camara M, Bennett M, Gheorghe M, Krasnogor N (2009) Modular assembly of cell systems biology models using p systems. Int J Found Comput Sci 20(3): 427-442.
-
(2009)
Int J Found Comput Sci
, vol.20
, Issue.3
, pp. 427-442
-
-
Romero-Campero, F.J.1
Twycross, J.2
Camara, M.3
Bennett, M.4
Gheorghe, M.5
Krasnogor, N.6
-
45
-
-
73149118493
-
Synthetic cells and organelles: compartmentalization strategies
-
doi:10.1002/bies.200900106
-
Roodbeen R, van Hest JCM (2009) Synthetic cells and organelles: compartmentalization strategies. BioEssays 31(12): 1299-1308 doi: 10. 1002/bies. 200900106.
-
(2009)
BioEssays
, vol.31
, Issue.12
, pp. 1299-1308
-
-
Roodbeen, R.1
van Hest, J.C.M.2
-
46
-
-
37349009767
-
Synthetic biology: promises and challenges
-
Serrano L (2007) Synthetic biology: promises and challenges. Mol Syst Biol 3.
-
(2007)
Mol Syst Biol
, vol.3
-
-
Serrano, L.1
-
47
-
-
45149118469
-
Engineering biobrick vectors from biobrick parts
-
Shetty R, Endy D, Knight T (2008) Engineering biobrick vectors from biobrick parts. J Biol Eng 2(1): 5.
-
(2008)
J Biol Eng
, vol.2
, Issue.1
, pp. 5
-
-
Shetty, R.1
Endy, D.2
Knight, T.3
-
48
-
-
14744297207
-
Tension-induced fusion of bilayer membranes and vesicles
-
Shillcock J, Lipowsky R (2005) Tension-induced fusion of bilayer membranes and vesicles. Nat Mater 4: 225-228.
-
(2005)
Nat Mater
, vol.4
, pp. 225-228
-
-
Shillcock, J.1
Lipowsky, R.2
-
49
-
-
57349200305
-
A multi-scaled approach to artificial life simulation with p systems and dissipative particle dynamics
-
ACM, New York, NY, USA, doi: 10. 1145/1389095. 1389134
-
Smaldon J, Blakes J, Krasnogor N, Lancet D (2008) A multi-scaled approach to artificial life simulation with p systems and dissipative particle dynamics. In: GECCO '08: proceedings of the 10th annual conference on Genetic and evolutionary computation, ACM, New York, NY, USA, pp 249-256. doi: 10. 1145/1389095. 1389134.
-
(2008)
GECCO '08: proceedings of the 10th annual conference on Genetic and evolutionary computation
, pp. 249-256
-
-
Smaldon, J.1
Blakes, J.2
Krasnogor, N.3
Lancet, D.4
-
50
-
-
51949084601
-
Reversible restructuring of aqueous block copolymer assemblies through stimulus-induced changes in amphiphilicity
-
Sundararaman A, Stephan T, Grubbs RB (2008) Reversible restructuring of aqueous block copolymer assemblies through stimulus-induced changes in amphiphilicity. J Am Chem Soc 130(37): 12264-12265.
-
(2008)
J Am Chem Soc
, vol.130
, Issue.37
, pp. 12264-12265
-
-
Sundararaman, A.1
Stephan, T.2
Grubbs, R.B.3
-
51
-
-
34247584071
-
A synthetic biology challenge: making cells compute
-
Tan C, Song H, Niemi J, You L (2007) A synthetic biology challenge: making cells compute. Mol Biosyst 3: 343-353.
-
(2007)
Mol Biosyst
, vol.3
, pp. 343-353
-
-
Tan, C.1
Song, H.2
Niemi, J.3
You, L.4
-
52
-
-
33646540414
-
Controlled microfluidic encapsulation of cells, proteins, and microbeads in lipid vesicles
-
Tan YC, Hettiarachchi K, Siu M, Pan YR, Lee AP (2006) Controlled microfluidic encapsulation of cells, proteins, and microbeads in lipid vesicles. J Am Chem Soc 128(17): 5656-5658.
-
(2006)
J Am Chem Soc
, vol.128
, Issue.17
, pp. 5656-5658
-
-
Tan, Y.C.1
Hettiarachchi, K.2
Siu, M.3
Pan, Y.R.4
Lee, A.P.5
-
53
-
-
58449110912
-
A three-enzyme cascade reaction through positional assembly of enzymes in a polymersome nanoreactor
-
10. 1002/chem. 200802114
-
van Dongen SFM, Nallani M, Cornelissen JJLM, Nolte RJM, van Hest JCM (2009) A three-enzyme cascade reaction through positional assembly of enzymes in a polymersome nanoreactor. Chem Eur J 15(5): 1107-1114. 10. 1002/chem. 200802114.
-
(2009)
Chem Eur J
, vol.15
, Issue.5
, pp. 1107-1114
-
-
van Dongen, S.F.M.1
Nallani, M.2
Cornelissen, J.J.L.M.3
Nolte, R.J.M.4
van Hest, J.C.M.5
-
55
-
-
33845754075
-
Photonic boolean logic gates based on dna aptamers
-
Yoshida W, Yokobayashi Y (2007) Photonic boolean logic gates based on dna aptamers. Chem Commun 2(2): 195-197.
-
(2007)
Chem Commun
, vol.2
, Issue.2
, pp. 195-197
-
-
Yoshida, W.1
Yokobayashi, Y.2
|