-
1
-
-
0347444723
-
MicroRNAs: Genomics, biogenesis, mechanism, and function
-
10.1016/S0092-8674(04)00045-5. 14744438
-
MicroRNAs: genomics, biogenesis, mechanism, and function. DP Bartel, Cell 2004 116 2 281 297 10.1016/S0092-8674(04)00045-5 14744438
-
(2004)
Cell
, vol.116
, Issue.2
, pp. 281-297
-
-
Bartel, D.P.1
-
2
-
-
1842507232
-
Structural aspects of microRNA biogenesis
-
10.1080/15216540410001670142. 15085933
-
Structural aspects of microRNA biogenesis. J Krol WJ Krzyzosiak, IUBMB Life 2004 56 2 95 100 10.1080/15216540410001670142 15085933
-
(2004)
IUBMB Life
, vol.56
, Issue.2
, pp. 95-100
-
-
Krol, J.1
Krzyzosiak, W.J.2
-
3
-
-
4744357297
-
Structural features of microRNA (miRNA) precursors and their relevance to miRNA biogenesis and small interfering RNA/short hairpin RNA design
-
10.1074/jbc.M404931200. 15292246
-
Structural features of microRNA (miRNA) precursors and their relevance to miRNA biogenesis and small interfering RNA/short hairpin RNA design. J Krol K Sobczak U Wilczynska M Drath A Jasinska D Kaczynska WJ Krzyzosiak, J Biol Chem 2004 279 40 42230 42239 10.1074/jbc.M404931200 15292246
-
(2004)
J Biol Chem
, vol.279
, Issue.40
, pp. 42230-42239
-
-
Krol, J.1
Sobczak, K.2
Wilczynska, U.3
Drath, M.4
Jasinska, A.5
Kaczynska, D.6
Krzyzosiak, W.J.7
-
4
-
-
0347988235
-
Nuclear export of microRNA precursors
-
10.1126/science.1090599. 14631048
-
Nuclear export of microRNA precursors. E Lund S Guttinger A Calado JE Dahlberg U Kutay, Science 2004 303 5654 95 98 10.1126/science.1090599 14631048
-
(2004)
Science
, vol.303
, Issue.5654
, pp. 95-98
-
-
Lund, E.1
Guttinger, S.2
Calado, A.3
Dahlberg, J.E.4
Kutay, U.5
-
5
-
-
4444230672
-
Structural requirements for pre-microRNA binding and nuclear export by Exportin 5
-
10.1093/nar/gkh824. 15356295
-
Structural requirements for pre-microRNA binding and nuclear export by Exportin 5. Y Zeng BR Cullen, Nucleic Acids Res 2004 32 16 4776 4785 10.1093/nar/gkh824 15356295
-
(2004)
Nucleic Acids Res
, vol.32
, Issue.16
, pp. 4776-4785
-
-
Zeng, Y.1
Cullen, B.R.2
-
6
-
-
10244243802
-
Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences
-
10.1093/bioinformatics/bth374. 15217813
-
Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences. E Bonnet J Wuyts P Rouze Y Van de Peer, Bioinformatics 2004 20 17 2911 2917 10.1093/bioinformatics/bth374 15217813
-
(2004)
Bioinformatics
, vol.20
, Issue.17
, pp. 2911-2917
-
-
Bonnet, E.1
Wuyts, J.2
Rouze, P.3
Van De Peer, Y.4
-
7
-
-
0033572893
-
No evidence that mRNAs have lower folding free energies than random sequences with the same dinucleotide distribution
-
10.1093/nar/27.24.4816. 10572183
-
No evidence that mRNAs have lower folding free energies than random sequences with the same dinucleotide distribution. C Workman A Krogh, Nucleic Acids Res 1999 27 24 4816 4822 10.1093/nar/27.24.4816 10572183
-
(1999)
Nucleic Acids Res
, vol.27
, Issue.24
, pp. 4816-4822
-
-
Workman, C.1
Krogh, A.2
-
8
-
-
30744468557
-
Evidence that miRNAs are different from other RNAs
-
10.1007/s00018-005-5467-7. 16395542
-
Evidence that miRNAs are different from other RNAs. BH Zhang XP Pan SB Cox GP Cobb TA Anderson, Cell Mol Life Sci 2006 63 2 246 254 10.1007/s00018-005-5467-7 16395542
-
(2006)
Cell Mol Life Sci
, vol.63
, Issue.2
, pp. 246-254
-
-
Zhang, B.H.1
Pan, X.P.2
Cox, S.B.3
Cobb, G.P.4
Anderson, T.A.5
-
9
-
-
39749083331
-
The birth and death of microRNA genes in Drosophila
-
10.1038/ng.73. 18278047
-
The birth and death of microRNA genes in Drosophila. J Lu Y Shen QF Yu S Kumar B He SH Shi RW Carthew SM Wang CI Wu, Nat Genet 2008 40 351 355 10.1038/ng.73 18278047
-
(2008)
Nat Genet
, vol.40
, pp. 351-355
-
-
Lu, J.1
Shen, Y.2
Yu, Q.F.3
Kumar, S.4
He, B.5
Shi, S.H.6
Carthew, R.W.7
Wang, S.M.8
Wu, C.I.9
-
11
-
-
34547596338
-
MiPred: Classification of real and pseudo microRNA precursors using random forest prediction model with combined features
-
35 Web Server 10.1093/nar/gkm368. 17553836
-
MiPred: classification of real and pseudo microRNA precursors using random forest prediction model with combined features. P Jiang H Wu W Wang W Ma X Sun Z Lu, Nucleic Acids Res 2007 35 Web Server 339 344 10.1093/nar/gkm368 17553836
-
(2007)
Nucleic Acids Res
, pp. 23339-344
-
-
Jiang, P.1
Wu, H.2
Wang, W.3
Ma, W.4
Sun, X.5
Lu, Z.6
-
12
-
-
14044272835
-
Fast and reliable prediction of noncoding RNAs
-
10.1073/pnas.0409169102. 15665081
-
Fast and reliable prediction of noncoding RNAs. S Washietl IL Hofacker PF Stadler, Proc Natl Acad Sci USA 2005 102 7 2454 2459 10.1073/pnas.0409169102 15665081
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, Issue.7
, pp. 2454-2459
-
-
Washietl, S.1
Hofacker, I.L.2
Stadler, P.F.3
-
13
-
-
0035905766
-
Role for a bidentate ribonuclease in the initiation step of RNA interference
-
10.1038/35053110. 11201747
-
Role for a bidentate ribonuclease in the initiation step of RNA interference. E Bernstein AA Caudy SM Hammond GJ Hannon, Nature 2001 409 6818 363 366 10.1038/35053110 11201747
-
(2001)
Nature
, vol.409
, Issue.6818
, pp. 363-366
-
-
Bernstein, E.1
Caudy, A.A.2
Hammond, S.M.3
Hannon, G.J.4
-
14
-
-
0036147007
-
Molecular characterization of a mouse cDNA encoding Dicer, a ribonuclease III ortholog involved in RNA interference
-
10.1007/s00335-001-2119-6. 11889553
-
Molecular characterization of a mouse cDNA encoding Dicer, a ribonuclease III ortholog involved in RNA interference. RH Nicholson AW Nicholson, Mamm Genome 2002 13 2 67 73 10.1007/s00335-001-2119-6 11889553
-
(2002)
Mamm Genome
, vol.13
, Issue.2
, pp. 67-73
-
-
Nicholson, R.H.1
Nicholson, A.W.2
-
15
-
-
0035800521
-
A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA
-
10.1126/science.1062961. 11452083
-
A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA. G Hutvagner J McLachlan AE Pasquinelli E Balint T Tuschl PD Zamore, Science 2001 293 5531 834 838 10.1126/science.1062961 11452083
-
(2001)
Science
, vol.293
, Issue.5531
, pp. 834-838
-
-
Hutvagner, G.1
McLachlan, J.2
Pasquinelli, A.E.3
Balint, E.4
Tuschl, T.5
Zamore, P.D.6
-
16
-
-
0142165224
-
Functional siRNAs and miRNAs exhibit strand bias
-
10.1016/S0092-8674(03)00801-8. 14567918
-
Functional siRNAs and miRNAs exhibit strand bias. A Khvorova A Reynolds SD Jayasena, Cell 2003 115 2 209 216 10.1016/S0092-8674(03)00801-8 14567918
-
(2003)
Cell
, vol.115
, Issue.2
, pp. 209-216
-
-
Khvorova, A.1
Reynolds, A.2
Jayasena, S.D.3
-
17
-
-
10744225153
-
Asymmetry in the assembly of the RNAi enzyme complex
-
10.1016/S0092-8674(03)00759-1. 14567917
-
Asymmetry in the assembly of the RNAi enzyme complex. DS Schwarz G Hutvagner T Du Z Xu N Aronin PD Zamore, Cell 2003 115 2 199 208 10.1016/S0092-8674(03)00759-1 14567917
-
(2003)
Cell
, vol.115
, Issue.2
, pp. 199-208
-
-
Schwarz, D.S.1
Hutvagner, G.2
Du, T.3
Xu, Z.4
Aronin, N.5
Zamore, P.D.6
-
18
-
-
12544255565
-
Recognition and cleavage of primary microRNA precursors by the nuclear processing enzyme Drosha
-
10.1038/sj.emboj.7600491. 15565168
-
Recognition and cleavage of primary microRNA precursors by the nuclear processing enzyme Drosha. Y Zeng R Yi BR Cullen, EMBO J 2005 24 1 138 148 10.1038/sj.emboj.7600491 15565168
-
(2005)
EMBO J
, vol.24
, Issue.1
, pp. 138-148
-
-
Zeng, Y.1
Yi, R.2
Cullen, B.R.3
-
19
-
-
22844440427
-
Identification of hundreds of conserved and nonconserved human microRNAs
-
10.1038/ng1590. 15965474
-
Identification of hundreds of conserved and nonconserved human microRNAs. I Bentwich A Avniel Y Karov R Aharonov S Gilad O Barad A Barzilai P Einat U Einav E Meiri, et al. Nat Genet 2005 37 7 766 770 10.1038/ng1590 15965474
-
(2005)
Nat Genet
, vol.37
, Issue.7
, pp. 766-770
-
-
Bentwich, I.1
Avniel, A.2
Karov, Y.3
Aharonov, R.4
Gilad, S.5
Barad, O.6
Barzilai, A.7
Einat, P.8
Einav, U.9
Meiri, E.10
-
20
-
-
33751548288
-
Diversity of microRNAs in human and chimpanzee brain
-
10.1038/ng1914. 17072315
-
Diversity of microRNAs in human and chimpanzee brain. E Berezikov F Thuemmler LW van Laake I Kondova R Bontrop E Cuppen RH Plasterk, Nat Genet 2006 38 12 1375 1377 10.1038/ng1914 17072315
-
(2006)
Nat Genet
, vol.38
, Issue.12
, pp. 1375-1377
-
-
Berezikov, E.1
Thuemmler, F.2
Van Laake, L.W.3
Kondova, I.4
Bontrop, R.5
Cuppen, E.6
Plasterk, R.H.7
-
21
-
-
33749377869
-
Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis
-
10.1101/gr.5159906. 16954537
-
Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis. E Berezikov G van Tetering M Verheul J van de Belt L van Laake J Vos R Verloop M van de Wetering V Guryev S Takada, et al. Genome Res 2006 16 10 1289 1298 10.1101/gr.5159906 16954537
-
(2006)
Genome Res
, vol.16
, Issue.10
, pp. 1289-1298
-
-
Berezikov, E.1
Van Tetering, G.2
Verheul, M.3
Van De Belt, J.4
Van Laake, L.5
Vos, J.6
Verloop, R.7
Van De Wetering, M.8
Guryev, V.9
Takada, S.10
-
22
-
-
34547115664
-
High-throughput sequencing of Arabidopsis microRNAs: Evidence for frequent birth and death of MIRNA genes
-
10.1371/journal.pone.0000219. 17299599
-
High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes. N Fahlgren MD Howell KD Kasschau EJ Chapman CM Sullivan JS Cumbie SA Givan TF Law SR Grant JL Dangl, et al. PLoS One 2007 2 2 219 10.1371/journal.pone.0000219 17299599
-
(2007)
PLoS One
, vol.2
, Issue.2
, pp. 5219
-
-
Fahlgren, N.1
Howell, M.D.2
Kasschau, K.D.3
Chapman, E.J.4
Sullivan, C.M.5
Cumbie, J.S.6
Givan, S.A.7
Law, T.F.8
Grant, S.R.9
Dangl, J.L.10
-
23
-
-
33646913875
-
Cloning and expression of new microRNAs from zebrafish
-
10.1093/nar/gkl278. 16698962
-
Cloning and expression of new microRNAs from zebrafish. WP Kloosterman FA Steiner E Berezikov E de Bruijn J van de Belt M Verheul E Cuppen RH Plasterk, Nucleic Acids Res 2006 34 9 2558 2569 10.1093/nar/gkl278 16698962
-
(2006)
Nucleic Acids Res
, vol.34
, Issue.9
, pp. 2558-2569
-
-
Kloosterman, W.P.1
Steiner, F.A.2
Berezikov, E.3
De Bruijn, E.4
Van De Belt, J.5
Verheul, M.6
Cuppen, E.7
Plasterk, R.H.8
-
24
-
-
55949087147
-
In silico genetic robustness analysis of secondary structural elements in the miRNA gene
-
10.1007/s00239-008-9174-5. 18941828
-
In silico genetic robustness analysis of secondary structural elements in the miRNA gene. W Shu M Ni X Bo Z Zheng S Wang, J Mol Evol 2008 67 5 560 569 10.1007/s00239-008-9174-5 18941828
-
(2008)
J Mol Evol
, vol.67
, Issue.5
, pp. 560-569
-
-
Shu, W.1
Ni, M.2
Bo, X.3
Zheng, Z.4
Wang, S.5
-
26
-
-
0043123153
-
Vienna RNA secondary structure server
-
10.1093/nar/gkg599. 12824340
-
Vienna RNA secondary structure server. IL Hofacker, Nucleic Acids Res 2003 31 13 3429 3431 10.1093/nar/gkg599 12824340
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.13
, pp. 3429-3431
-
-
Hofacker, I.L.1
-
28
-
-
74949092081
-
Detection of nonneutral substitution rates on mammalian phylogenies
-
10.1101/gr.097857.109. 19858363
-
Detection of nonneutral substitution rates on mammalian phylogenies. KS Pollard MJ Hubisz KR Rosenbloom A Siepel, Genome Res 2010 20 1 110 121 10.1101/gr.097857.109 19858363
-
(2010)
Genome Res
, vol.20
, Issue.1
, pp. 110-121
-
-
Pollard, K.S.1
Hubisz, M.J.2
Rosenbloom, K.R.3
Siepel, A.4
-
29
-
-
23744458086
-
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
-
10.1101/gr.3715005. 16024819
-
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. A Siepel G Bejerano JS Pedersen AS Hinrichs M Hou K Rosenbloom H Clawson J Spieth LW Hillier S Richards, et al. Genome Res 2005 15 8 1034 1050 10.1101/gr.3715005 16024819
-
(2005)
Genome Res
, vol.15
, Issue.8
, pp. 1034-1050
-
-
Siepel, A.1
Bejerano, G.2
Pedersen, J.S.3
Hinrichs, A.S.4
Hou, M.5
Rosenbloom, K.6
Clawson, H.7
Spieth, J.8
Hillier, L.W.9
Richards, S.10
-
30
-
-
34247990255
-
On the Komogorov-Smirnov test for normality with mean and variance unknown
-
10.2307/2283970
-
On the Komogorov-Smirnov test for normality with mean and variance unknown. HW Lilliefors, J Am Stat Assoc 1967 62 399 402 10.2307/2283970
-
(1967)
J Am Stat Assoc
, vol.62
, pp. 399-402
-
-
Lilliefors, H.W.1
-
31
-
-
0001677717
-
Controlling the fasle discovery rate: A practical and powerful approach to multiple testing
-
Controlling the fasle discovery rate: a practical and powerful approach to multiple testing. Y Benjamini Y Hochberg, Journal of the Royal Statistical Society: Series B 1995 57 289 300
-
(1995)
Journal of the Royal Statistical Society: Series B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
|