메뉴 건너뛰기




Volumn 6215 LNCS, Issue , 2010, Pages 680-686

A residual level potential of mean force based approach to predict protein-protein interaction affinity

Author keywords

affinity; mean force of potential; protein complex; Protein protein interaction; quaternary structure; residue level

Indexed keywords

AFFINITY; MEAN FORCES; PROTEIN COMPLEX; PROTEIN-PROTEIN INTERACTION; QUATERNARY STRUCTURE; RESIDUE LEVEL;

EID: 77958461842     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-642-14922-1_85     Document Type: Conference Paper
Times cited : (5)

References (11)
  • 1
    • 0037340493 scopus 로고    scopus 로고
    • Development of unified statistical potentials describing protein-protein interactions
    • Lu, H., Lu, L., Skolnick, J.: Development of unified statistical potentials describing protein-protein interactions. Biophysical Journal 84, 1895-1901 (2003)
    • (2003) Biophysical Journal , vol.84 , pp. 1895-1901
    • Lu, H.1    Lu, L.2    Skolnick, J.3
  • 2
    • 17144383951 scopus 로고    scopus 로고
    • A knowledge-based energy function for protein-ligand, protein-protein, and protein-DNA complexes
    • Zhang, C., Liu, S., Zhu, Q. Q., Zhou, Y. Q.: A knowledge-based energy function for protein-ligand, protein-protein, and protein-DNA complexes. Journal of Medicinal Chemistry 48, 2325-2335 (2005)
    • (2005) Journal of Medicinal Chemistry , vol.48 , pp. 2325-2335
    • Zhang, C.1    Liu, S.2    Zhu, Q.Q.3    Zhou, Y.Q.4
  • 4
    • 0032112137 scopus 로고    scopus 로고
    • Prediction of binding constants of protein ligands: A fast method for the prioritization of hits obtained from de novo design or 3D database search programs
    • Bohm, H. J.: Prediction of binding constants of protein ligands: a fast method for the prioritization of hits obtained from de novo design or 3D database search programs. J. Comput. Aided Mol. Des. 12, 309-323 (1998)
    • (1998) J. Comput. Aided Mol. Des. , vol.12 , pp. 309-323
    • Bohm, H.J.1
  • 5
    • 33749242403 scopus 로고    scopus 로고
    • PMF scoring revisited
    • Muegge, I.: PMF scoring revisited. J. Med. Chem. 49, 5895-5902 (2006)
    • (2006) J. Med. Chem. , vol.49 , pp. 5895-5902
    • Muegge, I.1
  • 6
    • 67650077384 scopus 로고    scopus 로고
    • Docking ligands into flexible and solvated macromolecules. 4. Are popular scoring functions accurate for this class of proteins?
    • Englebienne, P., Moitessier, N.: Docking Ligands into Flexible and Solvated Macromolecules. 4. Are Popular Scoring Functions Accurate for this Class of Proteins? Journal of Chemical Information and Modeling 49, 1568-1580 (2009)
    • (2009) Journal of Chemical Information and Modeling , vol.49 , pp. 1568-1580
    • Englebienne, P.1    Moitessier, N.2
  • 7
  • 8
    • 73149095625 scopus 로고    scopus 로고
    • Quantitative prediction of protein-protein binding affinity with a potential of mean force considering volume correction
    • Su, Y., Zhou, A., Xia, X. F., Li, W., Sun, Z. R.: Quantitative prediction of protein-protein binding affinity with a potential of mean force considering volume correction. Protein Science 18, 2550-2558 (2009)
    • (2009) Protein Science , vol.18 , pp. 2550-2558
    • Su, Y.1    Zhou, A.2    Xia, X.F.3    Li, W.4    Sun, Z.R.5
  • 10
    • 0033970623 scopus 로고    scopus 로고
    • Derivation of protein-specific pair potentials based on weak sequence fragment similarity
    • Skolnick, J., Kolinski, A., Ortiz, A.: Derivation of protein-specific pair potentials based on weak sequence fragment similarity. Proteins-Structure Function and Genetics 38, 3-16 (2000)
    • (2000) Proteins-Structure Function and Genetics , vol.38 , pp. 3-16
    • Skolnick, J.1    Kolinski, A.2    Ortiz, A.3
  • 11
    • 69049083531 scopus 로고    scopus 로고
    • Using genome-wide measurements for computational prediction of SH2-peptide interactions
    • Wunderlich, Z., Mirny, L. A.: Using genome-wide measurements for computational prediction of SH2-peptide interactions. Nucleic Acids Research 37, 4629-4641 (2009)
    • (2009) Nucleic Acids Research , vol.37 , pp. 4629-4641
    • Wunderlich, Z.1    Mirny, L.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.