Calibration function for the orbitrap FTMS accounting for the space charge effect

Journal of the American Society for Mass Spectrometry

Volumn 21, Issue 11, 2010, Pages 1846-1851

  Gorshkov, Mikhail V ^a   Good, David M ^b   Lyutvinskiy, Yaroslav ^b   Yang, Hongqian ^b   Zubarev, Roman A ^b  

^a SEMENOV INSTITUTE OF CHEMICAL PHYSICS   (Russian Federation)

^b KAROLINSKA INSTITUTE   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

AUTOMATIC GAIN CONTROL; CALIBRATION FUNCTIONS; DIFFERENT SIZES; ELECTROSTATIC TRAP; FOURIER TRANSFORM MASS SPECTROMETERS; HIGH-FIELD; ION CLOUDS; ION CYCLOTRON RESONANCE; ION POPULATION; ION STORAGE; ION TRAPS; LIFE-SCIENCES; MASS MEASUREMENTS; MASS SPECTRAL; ORBITRAP; SPACE CHARGE EFFECTS; SPACE CHARGES;

CALIBRATION; CLOUDS; FOURIER TRANSFORMS; GAIN CONTROL; MASS SPECTROMETRY; PLASMA STABILITY; POPULATION STATISTICS; SYSTEMATIC ERRORS;

IONS;

ACCURACY; ARTICLE; CALIBRATION; ELECTROSPRAY; FOURIER TRANSFORM MASS SPECTROMETRY; ION CYCLOTRON RESONANCE MASS SPECTROMETRY; IONIZATION; MATHEMATICAL ANALYSIS; MOLECULAR WEIGHT; ORBITRAP FOURIER TRANSFORM MASS SPECTROMETRY; OSCILLATION; PERFORMANCE; STATIC ELECTRICITY;

ALGORITHMS; CALIBRATION; FOURIER ANALYSIS; MASS SPECTROMETRY; MODELS, CHEMICAL;

EID: 77958158137     PISSN: 10440305     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jasms.2010.06.021     Document Type: Article

References (32)

1. Mann M., Hojrup P., Roepstorff P. Use of Mass Spectrometric Molecular Weight Information to Identify Proteins in Sequence Database. Biol. Mass Spectrom. 1993, 22:338-345.
2. Shevchenko A., Jensen O.N., Podtelejnikov A.V., Sagliiocco F., Wilm M., Vorm O., Mortensen P., Shevchenko A., Boucherie H., Mann M. Linking Genome and Proteome by Mass Spectrometry: Large-Scale Identification of Yeast Proteins From Two-Dimensional Gels. Proc. Natl. Acad. Sci. U.S.A. 1996, 93:14440-14445.
3. Yates J.R. Mass Spectrometry: From Genomics to Proteomics. Trends Genet. 2000, 16:5-8.
4. Kelleher N.L., Lin H.Y., Valaskovic G.A., Aaserud D.J., Fridriksson E.K., McLafferty F.W. Top Down Versus Bottom Up Protein Characterization by Tandem High-Resolution Mass Spectrometry. J. Am. Chem. Soc. 1999, 121:806-812.
5. Zubarev R.A., Mann M. On the Proper Use of Mass Accuracy in Proteomics. Mol. Cell. Proteom. 2007, 6.3:377-381.
6. Liu T., Belov M.E., Jaitly N., Qian W.-J., Smith R.D. Accurate Mass Measurements in Proteomics. Chem. Rev. 2007, 107:3621-3653.
7. Mann M., Kelleher N.L. Precision Proteomics: The Case for High Resolution and High Mass Accuracy. Proc. Natl. Acad. Sci. U.S.A. 2008, 105:18132-18138.
8. Zubarev R.A., Hakansson P., Sundqvist B. Accuracy Requirements for Peptide Characterization by Monoisotopic Molecular Mass Measurements. Anal. Chem. 1996, 68:4060-4063.
9. Spengler B. De Novo Sequencing, Peptide Composition Analysis, and Composition-Based Sequencing: A New Strategy Employing Accurate Mass Determination by Fourier Transform Ion Cyclotron Resonance Mass Spectrometry. J. Am. Soc. Mass Spectrom. 2004, 15:703-714.
10. Scheltema R.A., Kamleh A., Wildridge D., Ebikeme C., Watson D.G., Barrett M.R., Jansen R.C., Breitling R. Increasing the Mass Accuracy of High-Resolution LC-MS Data Using Background Ions-a Case Study on the LTQ-Orbitrap. Proteomics 2008, 8:4647-4656.
11. He F., Emmett M.R., Hakansson K., Hendrickson C.L., Marshall A.G. Theoretical and Experimental Prospects for Protein Identification Based Solely on Accurate Mass Measurement. J. Proteom. Res. 2004, 3:61-67.
12. Jensen O.N., Podtelejnikov A., Mann M. Delayed Extraction Improves Specificity in Database Searches by Matrix-Assisted Laser Desorption/Ionization Peptide Maps. Rapid Commun. Mass Spectrom. 1996, 10:1371-1378.
13. Conrads T.P., Anderson G.A., Veenstra T.D., Pasa-Tolic L., Smith R.D. Utility of Accurate Mass Tags for Proteome-Wide Protein Identification. Anal. Chem. 2000, 72:3349-3354.
14. Makarov A. Electrostatic Axially-Harmonic Orbital Trapping: A Novel High-Performance Technique of Mass Analysis. Anal. Chem. 2000, 72:1156-1162.
15. Olsen J.V., de Godoy L.M., Li G., Macek B., Mortensen P., Persch R., Makarov A.A., Lange O., Horning S., Mann M. Parts Per Million Mass Accuracy on an Orbitrap Mass Spectrometer Via Lock-Mass Injection Into a C-Trap. Mol. Cell. Proteom. 2005, 4:2010-2021.
16. Makarov A., Denisov E., Lange O., Horning S. Dynamic Range of Mass Accuracy in LTQ Orbitrap Hybrid Mass Spectrometer. J. Am. Soc. Mass Spectrom. 2006, 17:977-982.
17. Gorshkov M.V., Nikolaev E.N. Optimal Cyclotron Radius FT-ICR Spectrometry for High Resolution. Int. J. Mass Spectrom. Ion Processes 1993, 125:1-8.
18. Schweikhard L., Ziegler J., Bopp H., Lutzenkirchen K. The Trapping Condition and a New Instability of the Ion Motion in the Ion-Cyclotron Resonance Trap. Int. J. Mass Spectrom. Ion Processes 1995, 141:77-90.
19. Tolmachev A.V., Robinson E.W., Wu S., Kang H., Lourette N.M., Paša-Tolic L., Smith R.D. Trapped-Ion Cell With Improved DC Potential Harmonicity for FT-ICR MS. J. Am. Soc. Mass Spectrom. 2008, 19:586-597.
20. Mitchell D.W., Rockwood A.L., Smith R.D. Frequency-Shifts and Modulation Effects Due to Solenoidal Magnetic-Field Inhomogeneities in Ion-Cyclotron Mass-Spectrometry. Int. J. Mass Spectrom. Ion Processes 1995, 141:101-116.
21. Jeffries J.B., Barlow S.E., Dunn G.H. Theory of Space-Charge Shift of Ion-Cyclotron Resonance Frequencies. Int. J. Mass Spectrom. Ion Processes 1983, 54:169-187.
22. Ledford E.B., Rempel D.E., Gross M.L. Space-Charge Effects in Fourier-Transform Mass Spectrometry-Mass Calibration. Anal. Chem. 1984, 56:2744-2748.
23. Chen S.P., Comisarow M.B. Simple Physical Models for Coulomb-Induced Frequency Shifts and Coulomb-Induced Inhomogeneous Broadening for Like and Unlike Ions in Fourier-Transform Ion-Cyclotron Resonance Mass-Spectrometry. Rapid. Commun. Mass Spectrom. 1991, 5:450-455.
24. Gorshkov M.V., Nikolaev E.N. Optimal Cyclotron Radius for High-Resolution FT-ICR Spectrometry. Int. J. Mass Spectrom. Ion Processes 1993, 125:1-8.
25. Gorshkov M.V., Marshall A.G., Nikolaev E.N. Analysis and Elimination of Systematic Errors Originating From Coulomb Mutual Interaction and Image Charge in Fourier Transform Ion Cyclotron Resonance Precise Mass Difference Measurements. J. Am. Soc. Mass Spectrom. 1993, 4:855-868.
26. Francl T.J., Sherman M.G., Hunter R.L., Locke M.J., Bowers W.D., McIver R.T. Experimental Determination of the Effects of Space-Charge on Ion-Cyclotron Resonance Frequencies. Int. J. Mass Spectrom. Ion Processes 1983, 54:189-199.
27. Easterling M.L., Mize T.H., Amster I.J. Routine Part-Per-Million Mass Accuracy for High-Mass Ions: Space-Charge Effects in MALDI FT-ICR. Anal. Chem. 1999, 71:624-632.
28. Masselon C., Tolmachev A.V., Anderson G.A., Harkewicz R., Smith R.D. Mass Measurement Errors Caused by "Local" Frequency Perturbations in FTICR Mass Spectrometry. J. Am. Soc. Mass Spectrom. 2002, 13:99-106.
29. Muddiman D.C., Oberg A.L. Statistical Evaluation of Internal and External Mass Calibration Laws Utilized in Fourier Transform Ion Cyclotron Resonance Mass Spectrometry. Anal. Chem. 2005, 77:2406-2414.
30. Wong R.L., Amster I.J. Sub-Part-Per-Million Mass Accuracy by Using Stepwise-External Calibration in Fourier Transform Ion Cyclotron Resonance Mass Spectrometry. J. Am. Soc. Mass Spectrom. 2006, 17:1681-1691.
31. Audi G., Wapstra A.H., Thibault C. The AME2003 Atomic Mass Evaluation (II). Tables, Graphs, and References. Nucl. Phys. A 2003, 729:337-676.
32. McAlister G., Phanstiel D., Coon J.J. A Dual Reaction Cell, ETD-Enabled Orbitrap Mass Spectrometer for Top-Down Proteomics June, 2008, Denver, CO.