Quantifying time-varying multiunit neural activity using entropy-based measures

IEEE Transactions on Biomedical Engineering

Volumn 57, Issue 11, 2010, Pages 2771-2777

  Choi, Young Seok ^a   Koenig, Matthew A ^b   Jia, Xiaofeng ^c   Thakor, Nitish V ^c  

^a Electronics and Telecommunications Research Institute (ETRI)   (South Korea)

^b UNIVERSITY OF HAWAII   (United States)

^c JOHNS HOPKINS UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

Brain injury; cardiac arrest (CA); discrete wavelet transform (DWT); envelope; KullbackLeibler distance (KLD); multiresolution; multiunit activity (MUA); Shannon entropy

Indexed keywords

DISCRETE WAVELET TRANSFORMS; INFORMATION THEORY; MICROELECTRODES; NEURONS; WAVELET TRANSFORMS;

BRAIN INJURY; CARDIAC ARREST; ENVELOPE; KULLBACK-LEIBLER DISTANCE; MULTI-UNIT ACTIVITY; MULTIRESOLUTION; SHANNON ENTROPY;

BRAIN;

ANIMAL EXPERIMENT; ANIMAL MODEL; ARTICLE; BRAIN ISCHEMIA; ELECTROENCEPHALOGRAM; ENTROPY; MULTIUNIT NEURAL ACTIVITY; NERVE CELL; NERVOUS SYSTEM ELECTROPHYSIOLOGY; NONHUMAN; SIMULATION; VALIDATION PROCESS;

EID: 77958124772     PISSN: 00189294     EISSN: None     Source Type: Journal    
DOI: 10.1109/TBME.2010.2049266     Document Type: Article

References (40)

1. G. Buzsaki, "Large-scale recording of neuronal ensembles," Nat. Neurosci., vol.7, pp. 446-451, May 2004. (Pubitemid 38544574)
2. E. N. Brown, R. E. Kass, and P. P. Mitra, "Multiple neural spike train data analysis: State-of-the-art and future challenges," Nat. Neurosci., vol.7, pp. 456-461, May 2004.
3. P. Dayan and L. F. Abbott, Theoretical Neuroscience: Computational and Mathematical Modeling of Neural Systems. Cambridge, MA: MIT Press, 2001.
4. M. S. Lewicki, "A review of methods for spike sorting: The detection and classification of neural action potentials," Network, vol.9, pp. R53-R78, Nov. 1998.
5. F. Rieke, D. Warland, R. R. Steveninck, and W. Bialek, Spikes: Exploring the Neural Code. Cambridge, MA: MIT Press, 1997.
6. H. Super and P. R. Roelfsema, "Chronic multiunit recordings in behaving animals:Advantages and limitations," Prog. Brain Res., vol.147, pp. 263- 282, 2005. (Pubitemid 39577625)
7. M. A. Nicolelis, D. Dimitrov, J. M. Carmena, R. Crist, G. Lehew, J. D. Kralik, and S. P. Wise, "Chronic, multisite, multielectrode recordings in macaque monkeys," Proc. Nat. Acad. Sci. USA, vol.100, pp. 11041- 11046, Sep. 16, 2003. (Pubitemid 37140149)
8. M. Zeitler, P. Fries, and S. Gielen, "Assessing neuronal coherence with single-unit, multi-unit, and local field potentials," Neural. Comput., vol.18, pp. 2256-2281, Sep. 2006. (Pubitemid 44324671)
9. E. Stark and M. Abeles, "Predicting movement from multiunit activity," J. Neurosci., vol.27, pp. 8387-8394, Aug. 1, 2007. (Pubitemid 47219625)
10. S. G. Mallat, "A theory for multiresolution signal decomposition-The wavelet representation," IEEE Trans. Pattern Anal. Mach. Intell., vol.11, no.7, pp. 674-693, Jul. 1989.
11. E. D. Ubeyli, G. Ilbay, D. Sahin, and N. Ates, "Analysis of spike-wave discharges in rats using discrete wavelet transform," Comput. Biol. Med., vol.39, pp. 294-300, Mar. 2009.
12. E. D. Ubeyli, "Statistics over features: EEG signals analysis," Comput. Biol. Med., vol.39, pp. 733-741, Aug. 2009.
13. H. C. Shin, S. Tong, S. Yamashita, X. Jia, R. G. Geocadin, and N. V. Thakor, "Quantitative EEG and effect of hypothermia on brain recovery after cardiac arrest," IEEE Trans. Biomed. Eng., vol.53, no.6, pp. 1016-1023, Jun. 2006. (Pubitemid 43860724)
14. Z. Nenadic and J. W. Burdick, "Spike detection using the continuous wavelet transform," IEEE Trans. Biomed. Eng., vol.52, no.1, pp. 74-87, Jan. 2005. (Pubitemid 40065611)
15. K. H. Kim and S. J. Kim, "A wavelet-based method for action potential detection from extracellular neural signal recording with low signal-tonoise ratio," IEEE Trans. Biomed. Eng., vol.50, no.8, pp. 999-1011, Aug. 2003.
16. H. A. Al-Nashash, J. S. Paul, W. C. Ziai, D. F. Hanley, and N. V. Thakor, "Wavelet entropy for subband segmentation of EEG during injury and recovery," Ann. Biomed. Eng., vol.31, pp. 653-658, Jun 2003.
17. O. A. Rosso, S. Blanco, J. Yordanova, V. Kolev, A. Figliola, M. Schurmann, and E. Basar, "Wavelet entropy: A new tool for analysis of short duration brain electrical signals," J. Neurosci. Methods, vol.105, pp. 65-75, Jan. 30, 2001. (Pubitemid 32106919)
18. C. E. Shannon, "A mathematical theory of communication," Bell Syst. Tech. J., vol.27, pp. 379-423, 1948.
19. R. Ferenets, T. Lipping, A. Anier, V. Jantti, S. Melto, and S. Hovilehto, "Comparison of entropy and complexity measures for the assessment of depth of sedation," IEEE Trans. Biomed. Eng., vol.53, no.6, pp. 1067- 1077, Jun. 2006. (Pubitemid 43860730)
20. R. Barbieri, L. M. Frank, D. P. Nguyen, M. C. Quirk,V. Solo,M.A.Wilson, and E. N. Brown, "Dynamic analyses of information encoding in neural ensembles," Neural Comput., vol.16, pp. 277-307, Feb. 2004. (Pubitemid 38085366)
21. P. H. Tiesinga, J. M. Fellous, J. V. Jose, and T. J. Sejnowski, "Information transfer in entrained cortical neurons," Network, vol.13, pp. 41-66, Feb. 2002.
22. J. Bruhn, L. E. Lehmann, H. Ropcke, T. W. Bouillon, and A. Hoeft, "Shannon entropy applied to the measurement of the electroencephalographic effects of desflurane," Anesthesiology, vol.95, pp. 30-35, Jul. 2001. (Pubitemid 32622993)
23. R. M. Gray, Entropy and Information Theory. New York: Springer-Verlag, 1990.
24. K. Kopitzki, P. C.Warnke, and J. Timmer, "Quantitative analysis by renormalized entropy of invasive electroencephalograph recordings in focal epilepsy," Phys. Rev. E, vol.58, pp. 4859-4864, Oct. 1998. (Pubitemid 128596421)
25. R. Q. Quiroga, J. Arnhold, K. Lehnertz, and P. Grassberger, "Kulback- Leibler and renormalized entropies: Applications to electroencephalograms of epilepsy patients," Phys. Rev. E Stat. Phys. Plasmas Fluids Relat. Interdiscip. Topics, vol.62, pp. 8380-8386, Dec. 2000. (Pubitemid 32087898)
26. J. S. Buchwald and F. S. Grover, "Amplitudes of background fast activity characteristic of specific brain sites," J. Neurophysiol., vol.33, pp. 148- 159, Jan. 1970.
27. N. K. Logothetis, "The underpinnings of the BOLD functional magnetic resonance imaging signal," J. Neurosci., vol.23, pp. 3963-3971, May 15, 2003. (Pubitemid 36958412)
28. A. Moran and I. Bar-Gad, "Revealing neuronal functional organization through the relation between multi-scale oscillatory extracellular signals," J. Neurosci. Methods, vol.186, pp. 116-129, Jan. 30, 2010.
29. A. Bezerianos, S. Tong, and N. Thakor, "Time-dependent entropy estimation of EEG rhythm changes following brain ischemia," Ann. Biomed. Eng., vol.31, pp. 221-232, Feb. 2003.
30. K. P. Indiradevi, E. Elias, P. S. Sathidevi, S. D. Nayak, and K. Radhakrishnan, "A multi-level wavelet approach for automatic detection of epileptic spikes in the electroencephalogram," Comput. Biol. Med., vol.38, pp. 805-816, Jul. 2008. (Pubitemid 351424479)
31. S. Kullback, "The Kullback-Leibler distance," Amer. Statist., vol.41, pp. 340-340, Nov. 1987.
32. S.Kullback, Information Theory and Statistics. NewYork:Wiley, 1959.
33. S. Kullback and R. A. Leibler, "On information and sufficiency," Ann. Math. Stat., vol.22, pp. 142-143, 1951.
34. X. Jia, M. A.Koenig, R.Nickl, G. Zhen,N.V. Thakor, and R.G.Geocadin, "Early electrophysiologic markers predict functional outcome associated with temperature manipulation after cardiac arrest in rats," Crit. Care Med., vol.36, pp. 1909-1916, Jun. 2008.
35. X. Jia, M. A. Koenig, H. C. Shin, G. Zhen, C. A. Pardo, D. F. Hanley, N. V. Thakor, and R. G. Geocadin, "Improving neurological outcomes post-cardiac arrest in a rat model: Immediate hypothermia and quantitative EEG monitoring," Resuscitation, vol.76, pp. 431-442, Mar. 2008. (Pubitemid 351192207)
36. P. M. Zhang, J. Y.Wu, Y. Zhou, P. J. Liang, and J. Q. Yuan, "Spike sorting based on automatic template reconstruction with a partial solution to the overlapping problem," J. Neurosci. Methods, vol.135, pp. 55-65, May 30, 2004. (Pubitemid 38333125)
37. R. Q. Quiroga, Z. Nadasdy, and Y. Ben-Shaul, "Unsupervised spike detection and sorting with wavelets and superparamagnetic clustering," Neural Comput., vol.16, pp. 1661-1687, Aug. 2004. (Pubitemid 38835137)
38. R. J. Brychta, S. Tuntrakool, M. Appalsamy, N. R. Keller, D. Robertson, R. G. Shiavi, and A. Diedrich, "Wavelet methods for spike detection in mouse renal sympathetic nerve activity," IEEE Trans. Biomed. Eng., vol.54, no.1, pp. 82-93, Jan. 2007. (Pubitemid 46127141)
39. I. Daubechies, Ten Lectures on Wavelets. Philadelphia, PA: Soc. Ind. Appl. Math., 1992.
40. R. G. Geocadin, J. Muthuswamy, D. L. Sherman, N. V. Thakor, and D. F. Hanley, "Early electrophysiological and histologic changes after global cerebral ischemia in rats," Mov. Disord., vol.15, pp. 14-21, 2000. (Pubitemid 30166764)