Wavelet methods for spike detection in mouse renal sympathetic nerve activity

IEEE Transactions on Biomedical Engineering

Volumn 54, Issue 1, 2007, Pages 82-93

  Brychta, Robert J ^a   Tuntrakool, Sunti ^b   Appalsamy, Martin ^b   Keller, Nancy R ^b   Robertson, David ^b   Shiavi, Richard G ^a   Diedrich, André ^b  

^a VANDERBILT UNIVERSITY   (United States)

^b VANDERBILT UNIVERSITY   (United States)

Author keywords

Denoising; Mice; Spike detection; Sympathetic nerve activity; Wavelet

Indexed keywords

CARDIOVASCULAR SYSTEM; GENETIC ALGORITHMS; GENETIC ENGINEERING; NEUROLOGY; PHARMACODYNAMICS; SIGNAL TO NOISE RATIO; WAVELET TRANSFORMS;

DENOISING; NOISE LEVEL ESTIMATION METHOD; SPIKE DETECTION; SYMPATHETIC NERVE ACTIVITY;

NEURAL NETWORKS;

AMPLITUDE MODULATION; ANIMAL TISSUE; ARTICLE; AUTOMATION; KIDNEY FUNCTION; MOUSE; NERVE CONDUCTION; NONHUMAN; PHYSIOLOGY; SIGNAL NOISE RATIO; SYMPATHETIC TONE; WAVEFORM;

ACTION POTENTIALS; ALGORITHMS; ANIMALS; DIAGNOSIS, COMPUTER-ASSISTED; ELECTRODIAGNOSIS; KIDNEY; MICE; MICE, INBRED C57BL; PATTERN RECOGNITION, AUTOMATED; SYMPATHETIC NERVOUS SYSTEM;

EID: 33846339342     PISSN: 00189294     EISSN: None     Source Type: Journal    
DOI: 10.1109/TBME.2006.883830     Document Type: Article

References (60)

1. S. Gudbjornsdottir, P. Lonnroth, Y. B. Sverrisdottir, B. G. Wallin, and M. Elam, "Sympathetic nerve activity and insulin in obese normotensive and hypertensive men," Hypertension, vol. 27, pp. 276-280, 1996.
2. A. L. Mark, "The sympathetic nervous system in hypertension: A potential long-term regulator of arterial pressure," J. Hypertens. Suppl., vol. 14, pp. S159-S165, 1996.
3. B. G. Wallin and G. Sundlof, "A quantitative study of muscle nerve sympathetic activity in resting normotensive and hypertensive subjects," Hypertension, vol. 1, pp. 67-77, 1979.
4. B. Andersson, M. Elam, B. G. Wallin, P. Bjorntorp, and O. K. Andersson, "Effect of energy-restricted diet on sympathetic muscle nerve activity in obese women," Hypertension, vol. 18, pp. 783-789, 1991.
5. I. H. Klein, G. Ligtenberg, J. Neumann, P. L. Oey, H. A. Koomans, and P. J. Blankestijn, "Sympathetic nerve activity is inappropriately increased in chronic renal disease," J. Am. Soc. Nephrol., vol. 14, pp. 3239-3244, 2003.
6. R. J. Huggett, E. M. Scott, S. G. Gilbey, J. B. Stoker, A. F. Mackintosh, and D. A. Mary, "Impact of type 2 diabetes mellitus on sympathetic neural mechanisms in hypertension," Circulation, vol. 108, pp. 3097-3101, 2003.
7. R. J. Huggett, E. M. Scott, S. G. Gilbey, J. Bannister, A. F. Mackintosh, and D. A. Mary, "Disparity of autonomic control in type 2 diabetes mellitus," Diabetologia, vol. 48, pp. 172-179, 2005.
8. R. Furlan, G. Jacob, M. Snell, D. Robertson, A. Porta, P. Harris, and R. Mosqueda-Garcia, "Chronic orthostatic intolerance:A disorder with discordant cardiac and vascular sympathetic control," Circulation, vol. 98, pp. 2154-2159, 1998.
9. P. van de Borne, N. Montano, M. Pagani, R. Oren, and V. K. Somers, "Absence of low-frequency variability of sympathetic nerve activity in severe heart failure," Circulation, vol. 95, pp. 1449-1454, 1997.
10. M. Bader, "Mouse knockout models of hypertension," Meth. Mol. Med., vol. 108, pp. 117-32, 2004.
11. V. Gross, J. Tank, M. Obst, R. Plehm, K. J. Blumer, A. Diedrich, J. Jordan, and F. C. Luft, "Autonomic nervous system and blood pressure regulation in RGS2-deficient mice," Am. J. Physiol. Regul. Integr. Comp. Physiol., vol. 288, pp. R1134-R1142, 2005.
12. B. J. Janssen and J. F. Smits, "Autonomic control of blood pressure in mice: Basic physiology and effects of genetic modification," Am. J. Physiol .Regul. Integr. Comp. Physiol., vol. 282, pp. R1545-R1564, 2002.
13. E. Popova, M. Bader, and A. Krivokharchenko, "Production of transgenic models in hypertension," Meth. Mol. Med., vol. 108, pp. 33-50, 2004.
14. P. C. Usera, S. Vincent, and D. Robertson, "Human phenotypes and animal knockout models of genetic autonomic disorders," J. Biomed. Sci., vol. 11, pp. 4-10, 2004.
15. N. R. Keller, A. Diedrich, M. Appalsamy, S. Tuntrakool, S. Lonce, C. Finney, M. G. Caron, and D. Robertson, "Norepinephrine transporter- deficient mice exhibit excessive tachycardia and elevated blood pressure with wakefulness and activity," Circulation, vol. 110, pp. 1191-1206, 2004.
16. G. Y. Ling, W. H. Cao, M. Onodera, K. H. Ju, H. Kurihara, Y. Kurihara, Y. Yazaki, M. Kumada, Y. Fukuda, and T. Kuwaki, "Renal sympathetic nerve activity in mice: Comparison between mice and rats and between normal and endothelin-1 deficient mice," Brain Res., vol. 808, pp. 238-249, 1998.
17. X. Ma, M. W. Chapleau, C. A. Whiteis, F. M. Abboud, and K. Bielefeldt, "Angiotensin selectively activates a subpopulation of postganglionic sympathetic neurons in mice," Circ. Res., vol. 88, pp. 787-793, 2001.
18. X. Ma, F. M. Abboud, and M. W. Chapleau, "A novel effect of angiotensin on renal sympathetic nerve activity in mice," J. Hypertens., vol. 19, pp. 609-618, 2001.
19. W. Zhang, J. L. Li, M. Hosaka, R. Janz, J. M. Shelton, G. M. Albright, J. A. Richardson, T. C. Sudhof, and R. G. Victor, "Cyclosporine a-induced hypertension involves synapsin in renal sensory nerve endings," Proc. Nat. Acad. Sci. USA, vol. 97, pp. 9765-9770, 2000.
20. M. Bak and E. Schmidt, "Improved time-amplitude window discriminator," IEEE Trans. Biomed. Eng., vol. BME-24, pp. 486-489, 1977.
21. W. G. Haynes, D. A. Morgan, S. A. Walsh, A. L. Mark, and W. I. Sivitz, "Receptor-mediated regional sympathetic nerve activation by leptin," J. Clin. Invest., vol. 100, pp. 270-278, 1997.
22. E. N. Brown, R. E. Kass, and P. P. Mitra, "Multiple neural spike train data analysis: State-of-the-art and future challenges," Nat. Neurosci., vol. 7, pp. 456-461, 2004.
23. M. S. Lewicki, "A review of methods for spike sorting: The detection and classification of neural action potentials," Network-Computation Neural Syst., vol. 9, pp. R53-R78, 1998.
24. I. N. Bankman, K. O. Johnson, and W. Schneider, "Optimal detection, classification, and superposition resolution in neural waveform recordings," IEEE Trans. Biomed. Eng., vol. 40, no. 8, pp. 836-841, Aug. 1993.
25. S. Gozani and J. Miller, " Optimal discrimination and classification of neuronal action potential waveforms from multiunit, multichannel recordings using software-based linear filters," IEEE Trans. Biomed. Eng., vol. 41, no. 4, pp. 358-372, Apr. 1994.
26. C. Pouzat, O. Mazor, and G. Laurent, "Using noise signature to optimize spike-sorting and to assess neuronal classification quality," J. Neurosci. Meth., vol. 122, pp. 43-57, 2002.
27. R. Segev, J. Goodhouse, J. Puchalla, and M. Berry, "Recording spikes from a large fraction of the ganglion cells in a retinal patch," Nature Neurosci., vol. 7, pp. 1155-1162, 2004.
28. A. Diedrich, W. Charoensuk, R. J. Brychta, A. C. Ertl, and R. Shiavi, "Analysis of raw microneurographic recordings based on wavelet de-noising technique and classification algorithm: Wavelet analysis in microneurography, " IEEE Trans. Biomed. Eng., vol. 50, no. 1, pp. 41-50, Jan. 2003.
29. E. Hulata, R. Segev, Y. Shapira, M. Benveniste, and E. Ben-Jacob, "Detection and sorting of neural spikes using wavelet packets," Phys. Rev. Lett., vol. 85, pp. 4637-4640, 2000.
30. E. Hulata, R. Segev, and E. Ben-Jacob, "A method for spike sorting and detection based on wavelet packets and Shannon's mutual information," J. Neurosci. Meth., vol. 117, pp. 1-12, 2002.
31. K. Kim and S. Kim, "A wavelet-based method for action potential detection from extracellular neural signal recording with low signal-tonoise ratio," IEEE Trans. Biomed. Eng., vol. 50, no. 8, pp. 999-1011, Aug. 2003.
32. J. Letelier and P. Weber, "Spike sorting based on discretewavelet transform coefficients," J. Neurosci. Meth., vol. 101, pp. 93-106, 2000.
33. H. Nakatani, T. Watanabe, and N. Hoshimiya, "Detection of nerve action potentials under low signal-to-noise ratio condition," IEEE Trans. Biomed. Eng., vol. 48, no. 8, pp. 845-849, Aug. 2001.
34. Z. Nenadic and J. Burdick, "Spike detection using the continuous wavelet transform," IEEE Trans. Biomed. Eng., vol. 52, no. 1, pp. 74-87, Jan. 2005.
35. K. Oweiss and D. Anderson, "Noise reduction in multichannel neural recordings using a new array wavelet denoising algorithm," Neurocomputing, vol. 38, pp. 1687-1693, 2001.
36. _, "Spike sorting: A novel shift and amplitude invariant technique," Neurocomputing, vol. 44, pp. 1133-1139, 2002.
37. G. Zouridakis and D. C. Tam, "Identification of reliable spike templates in multi-unit extracellular recordings using fuzzy clustering," Comput. Meth. Prog. Biomed., vol. 61, pp. 91-98, 2000.
38. R. R. Coifman and D. L. Donoho, "Translation-Invariant de-noising," in Lecture Notes in Statistics, 1995, vol. 103, pp. 125-150.
39. M. Lang, H. Guo, J. Odegard, C. Burrus, and R. Wells, "Noise reduction using an undecimated discrete wavelet transform," IEEE Signal Process. Lett., vol. 3, no. 1, pp. 10-12, Jan. 1996.
40. J. Liang and T. W. Parks, "A translation-invariant wavelet representation algorithm with applications," IEEE Trans. Signal Process., vol. 44, no. 2, pp. 225-232, Feb. 1996.
41. J. Pesquet, H. Krim, and H. Carfantan, "Time-invariant orthonormal wavelet representations," IEEE Trans. Signal Process., vol. 44, no. 8, pp. 1964-1970, Aug. 1996.
42. B. Silverman, "Wavelets in statistics: Beyond the standard assumptions," Philosophical Trans. Roy. Soc. Lond. Series A-Math. Physical Eng. Sci., vol. 357, pp. 2459-2473, 1999.
43. E. P. Simoncelli, W. T. Freeman, E. H. Adelson, and D. J. Heeger, "Shiftable multiscale transforms," IEEE Trans. Inf. Theory, vol. 38, no. 2, pp. 587-607, Mar. 1992.
44. A. Cohen and J. Kovacevic, "Wavelets: The mathematical background," Proc. IEEE, vol. 84, no. 4, pp. 514-522, Apr. 1996.
45. S. G. Mallat, "A theory for multiresolution signal decomposition: the wavelet representation," IEEE Trans. Pattern Anal. Mach. Intell., vol. 11, no. 7, pp. 674-693, Jul. 1989.
46. V. Samar, A. Bopardikar, R. Rao, and K. Swartz, "Wavelet analysis of neuroelectric waveforms: A conceptual tutorial," Brain Lang., vol. 66, pp. 7-60, 1999.
47. S. Mallat, "Zero-Crossings of a wavelet transform," IEEE Trans. Inf. Theory, vol. 37, no. 4, pp. 1019-1033, Jul. 1991.
48. D. L. Donoho, "De-Noising by soft-thresholding," IEEE Trans. Inf. Theory, vol. 41, no. 3, pp. 613-627, May 1995.
49. I. Johnstone and B. Silverman, "Wavelet threshold estimators for data with correlated noise," J. Roy. Statist. Soc. Series B - Methodological, vol. 59, pp. 319-351, 1997.
50. F. Hampel, Robust Statistics: The Approach Based on Influence Functions. New York: Wiley, 1986.
51. G. Wornell, "Wavelet-based representations for the 1/f family of fractal processes," Proc. IEEE, vol. 81, no. 10, pp. 1428-1450, Oct. 1993.
52. P. Welch, "Use of fast Fourier transform for estimation of power spectra - A method based on time averaging over short modified periodograms," IEEE Trans. Audio Electroacoust., vol. AU-15, no. 1, pp. 70-73, Jan. 1967.
53. G. Strangman, "Detecting synchronous cell assemblies with limited data and overlapping assemblies," Neural Comput., vol. 9, pp. 51-76, 1997.
54. H. Olkkonen, P. Pesola, J. Olkkonen, and H. Zhou, "Hilbert transform assisted complex wavelet transform for neuroelectric signal analysis," J. Neurosci. Meth., vol. 151, pp. 106-113, 2006.
55. R. Mosqueda-Garcia, "Evaluation of autonomic failure," in Disorders of the Autonomic Nervous System, D. Robertson and I. Biaggioni, Eds., 1 ed. Luxembourg: Harwood Academic, 1995, vol. 5, The Autonomic Nervous System, pp. 25-59.
56. J. P. Greenwood, J. B. Stoker, and D. A. Mary, "Single-unit sympathetic discharge: Quantitative assessment in human hypertensive disease," Circulation, vol. 100, pp. 1305-1310, 1999.
57. V. G. Macefield and B. G. Wallin, "The discharge behaviour of single sympathetic neurones supplying human sweat glands," J. Auton. Nervous Syst., vol. 61, pp. 277-286, 1996.
58. _, "Firing properties of single vasoconstrictor neurones in human subjects with high levels of muscle sympathetic activity," J. Physiol.-Lond., vol. 516, pp. 293-301, 1999.
59. _, "Respiratory and cardiac modulation of single sympathetic vasoconstrictor and sudomotor neurones to human skin," J. Physiol.-Lond., vol. 516, pp. 303-314, 1999.
60. V. G. Macefield, M. Elam, and B. G. Wallin, "Firing properties of single postganglionic sympathetic neurones recorded in awake human subjects," Auton. Neurosci. - Basic Clin., vol. 95, pp. 146-159, 2002.