-
1
-
-
35548983132
-
Estimation of the parameters of fish stock dynamics from catch-at-age data and indices of abundance: Can natural and fishing mortality be separated
-
doi:10.1139/F07-074
-
Aanes, S., Engen, S., Saether, B.-E., and Aanes, R. 2007. Estimation of the parameters of fish stock dynamics from catch-at-age data and indices of abundance: can natural and fishing mortality be separated? Can. J. Fish. Aquat. Sci. 64(8): 1130-1142. doi:10.1139/F07-074.
-
(2007)
Can. J. Fish. Aquat. Sci
, vol.64
, Issue.8
, pp. 1130-1142
-
-
Aanes, S.1
Engen, S.2
Saether, B.-E.3
Aanes, R.4
-
2
-
-
0034188341
-
Simulated annealing for maximum a posteriori parameter estimation of hidden Markov models
-
doi:10.1109/18. 841176
-
Andrieu, C., and Doucet, A. 2000. Simulated annealing for maximum a posteriori parameter estimation of hidden Markov models. IEEE Trans. Inf. Theory, 46(3): 994-1004. doi:10.1109/18. 841176.
-
(2000)
IEEE Trans. Inf. Theory
, vol.46
, Issue.3
, pp. 994-1004
-
-
Andrieu, C.1
Doucet, A.2
-
3
-
-
13844272842
-
Local influence diagnostics for the retrospective problem in sequential population analysis
-
doi:10.1016/j.icesjms.2004.11.015
-
Cadigan, N., and Farrell, P.J. 2005. Local influence diagnostics for the retrospective problem in sequential population analysis. ICES J. Mar. Sci. 62(2): 256-265. doi:10.1016/j.icesjms.2004.11.015.
-
(2005)
ICES. J. Mar. Sci
, vol.62
, Issue.2
, pp. 256-265
-
-
Cadigan, N.1
Farrell, P.J.2
-
4
-
-
0001188220
-
Estimation of unregistered Peruvian anchoveta (Engraulis ringens) in official catch statistics, 1951-1982
-
Edited by D. Pauly and I. Tsukayama. ICLARM Studies and Reviews No. 15
-
Castillo, S., and Mendo, J. 1987. Estimation of unregistered Peruvian anchoveta (Engraulis ringens) in official catch statistics, 1951-1982. In The Peruvian anchoveta and its upwelling ecosystem: three decades of change. Edited by D. Pauly and I. Tsukayama. ICLARM Studies and Reviews No. 15. pp. 109-116.
-
(1987)
The Peruvian Anchoveta and Its Upwelling Ecosystem: Three Decades of Change
, pp. 109-116
-
-
Castillo, S.1
Mendo, J.2
-
5
-
-
65749099431
-
Role of predation by harp seals Pagophilus groenlandicus in the collapse and nonrecovery of northern Gulf of St. Lawrence cod Gadus morhua
-
doi:10.3354/meps07897
-
Chassot, E., Duplisea, D., Hammill, M., Caskenette, A., Bousquet, N., Lambert, Y., and Stenson, G. 2009. Role of predation by harp seals Pagophilus groenlandicus in the collapse and nonrecovery of northern Gulf of St. Lawrence cod Gadus morhua. Mar. Ecol. Prog. Ser. 379: 279-297. doi:10.3354/meps07897.
-
(2009)
Mar. Ecol. Prog. Ser
, vol.379
, pp. 279-297
-
-
Chassot, E.1
Duplisea, D.2
Hammill, M.3
Caskenette, A.4
Bousquet, N.5
Lambert, Y.6
Stenson, G.7
-
6
-
-
77958047063
-
Assessment of the southern Gulf of St. Lawrence cod stock
-
No. 2006/023
-
Chouinard, G.A., Currie, L., Poirier, G.A., Hurlbut, T., Daigle, D., and Savoie, L. 2006. Assessment of the southern Gulf of St. Lawrence cod stock. DFO Can. Sci. Advis. Sec. Res. Doc. No. 2006/023.
-
(2006)
DFO Can. Sci. Advis. Sec. Res. Doc
-
-
Chouinard, G.A.1
Currie, L.2
Poirier, G.A.3
Hurlbut, T.4
Daigle, D.5
Savoie, L.6
-
7
-
-
4444253049
-
Are stock assessment methods too complicated?
-
doi:10.1111/j.1467-2679.2004.00157
-
Cotter, A.J.R., Burt, L., Paxton, C.G.M., Fernandez, C., Buckland, S.T., and Pan, J.-X. 2004. Are stock assessment methods too complicated? Fish Fish. 5: 235-254. doi:10.1111/j.1467-2679.2004.00157.
-
(2004)
Fish Fish
, vol.5
, pp. 235-254
-
-
Cotter, A.J.R.1
Burt, L.2
Paxton, C.G.M.3
Fernandez, C.4
Buckland, S.T.5
Pan, J.-X.6
-
8
-
-
77958031584
-
Appendix 4: Estimating systematic bias in the North Sea cod landings data
-
7-16 September 2004, Bergen, Norway. ICES CM 2005/ACFM:07
-
Darby, C.D. 2005. Appendix 4: estimating systematic bias in the North Sea cod landings data. In Report on the assessment of demersal stocks in the North Sea and Skaggerrak, 7-16 September 2004, Bergen, Norway. ICES CM 2005/ACFM:07. pp. 693-713.
-
(2005)
Report On the Assessment of Demersal Stocks In the North Sea and Skaggerrak
, pp. 693-713
-
-
Darby, C.D.1
-
9
-
-
29144479344
-
State-space likelihoods for nonlinear fisheries time-series
-
doi:10.1139/f05-116
-
de Valpine, P., and Hilborn, R. 2005. State-space likelihoods for nonlinear fisheries time-series. Can. J. Fish. Aquat. Sci. 62(9): 1937-1952. doi:10.1139/f05-116.
-
(2005)
Can. J. Fish. Aquat. Sci
, vol.62
, Issue.9
, pp. 1937-1952
-
-
de Valpine, P.1
Hilborn, R.2
-
10
-
-
0141567816
-
Marginal maximum a posteriori estimation using Markov chain Monte
-
doi:10.1023/A:1013172322619
-
Doucet, A., Godsill, S.J., and Robert, C.P. 2002. Marginal maximum a posteriori estimation using Markov chain Monte Carlo. Stat. Comput. 12(1): 77-84. doi:10.1023/A:1013172322619.
-
(2002)
Carlo. Stat. Comput
, vol.12
, Issue.1
, pp. 77-84
-
-
Doucet, A.1
Godsill, S.J.2
Robert, C.P.3
-
11
-
-
25144482720
-
Threshold accepting: A general purpose optimization algorithm appearing superior to simulated annealing
-
doi:10.1016/0021-9991(90)90201-B
-
Dueck, G., and Scheuer, T. 1990. Threshold accepting: a general purpose optimization algorithm appearing superior to simulated annealing. J. Comp. Physiol. 90: 161-175. doi:10.1016/0021-9991(90)90201-B.
-
(1990)
J. Comp. Physiol
, vol.90
, pp. 161-175
-
-
Dueck, G.1
Scheuer, T.2
-
12
-
-
0020424035
-
A general theory for analyzing catch at age data
-
doi:10.1139/f82-157
-
Fournier, D., and Archibald, C.P. 1982. A general theory for analyzing catch at age data. Can. J. Fish. Aquat. Sci. 39(8): 1195-1207. doi:10.1139/f82-157.
-
(1982)
Can. J. Fish. Aquat. Sci
, vol.39
, Issue.8
, pp. 1195-1207
-
-
Fournier, D.1
Archibald, C.P.2
-
13
-
-
0030440104
-
Comparison of commercial fishery and research catch data
-
doi:10.1139/cjfas-53-12-2681
-
Fox, D.S., and Starr, R.M. 1996. Comparison of commercial fishery and research catch data. Can. J. Fish. Aquat. Sci. 53: 2681-2694. doi:10.1139/cjfas-53-12-2681.
-
(1996)
Can. J. Fish. Aquat. Sci
, vol.53
, pp. 2681-2694
-
-
Fox, D.S.1
Starr, R.M.2
-
14
-
-
0003313511
-
An adaptive framework for the estimation of population size
-
Gavaris, S. 1988. An adaptive framework for the estimation of population size. Can. Atl. Fish. Sci. Adv. Comm. Res. Doc. No. 88/29.
-
(1988)
Can. Atl. Fish. Sci. Adv. Comm. Res. Doc
, Issue.29-88
-
-
Gavaris, S.1
-
15
-
-
0036014588
-
Statistical issues in fisheries' stock assessment
-
doi:10.1111/ 1467-9469.00282
-
Gavaris, S., and Ianelli, J.N. 2002. Statistical issues in fisheries' stock assessment. Scand. J. Stat. 29(2): 245-267. doi:10.1111/ 1467-9469.00282.
-
(2002)
Scand. J. Stat
, vol.29
, Issue.2
, pp. 245-267
-
-
Gavaris, S.1
Ianelli, J.N.2
-
16
-
-
0000821796
-
Pseudo maximum likelihood estimation: Theory and applications
-
doi:10.1214/aos/1176345526
-
Gong, G., and Samaniego, F.J. 1981. Pseudo maximum likelihood estimation: theory and applications. Ann. Stat. 9(4): 861-869. doi:10.1214/aos/1176345526.
-
(1981)
Ann. Stat
, vol.9
, Issue.4
, pp. 861-869
-
-
Gong, G.1
Samaniego, F.J.2
-
17
-
-
0022832245
-
Statistical considerations in the analysis of catch-at-age observations
-
doi:10.1093/icesjms/43.1.83
-
Gudmundsson, G. 1986. Statistical considerations in the analysis of catch-at-age observations. ICES J. Mar. Sci. 43(1): 83-90. doi:10.1093/icesjms/43.1.83.
-
(1986)
ICES J. Mar. Sci
, vol.43
, Issue.1
, pp. 83-90
-
-
Gudmundsson, G.1
-
18
-
-
23944454163
-
Censored catch data in fisheries stock assessment
-
doi:10.1016/j.icesjms.2005.04.015
-
Hammond, T.R., and Trenkel, V.M. 2005. Censored catch data in fisheries stock assessment. ICES J. Mar. Sci. 62: 1118-1130. doi:10.1016/j.icesjms.2005.04.015.
-
(2005)
ICES J. Mar. Sci
, vol.62
, pp. 1118-1130
-
-
Hammond, T.R.1
Trenkel, V.M.2
-
19
-
-
0025677021
-
Approaches to age-structured separable sequential population analysis
-
doi:10.1139/f90-263
-
Kimura, D. 1990. Approaches to age-structured separable sequential population analysis. Can. J. Fish. Aquat. Sci. 47(12): 2364-2374. doi:10.1139/f90-263.
-
(1990)
Can. J. Fish. Aquat. Sci
, vol.47
, Issue.12
, pp. 2364-2374
-
-
Kimura, D.1
-
20
-
-
0002777156
-
Evolution of the integrated scientific monitoring programme in Australia's South East Fishery
-
Sydney, Australia, 1-5 February 1999. FAO, Rome
-
Knuckey, I.A., Grieve, C., and Smith, D.C. 1999. Evolution of the integrated scientific monitoring programme in Australia's South East Fishery. In Proceedings of the International Conference on Integrated Fisheries Monitoring, Sydney, Australia, 1-5 February 1999. FAO, Rome. pp. 231-248.
-
(1999)
Proceedings of the International Conference On Integrated Fisheries Monitoring
, pp. 231-248
-
-
Knuckey, I.A.1
Grieve, C.2
Smith, D.C.3
-
21
-
-
0010666697
-
GMM inference when the number of moment conditions is large
-
doi:10.1016/S0304-4076(99)00014-7
-
Koenker, R., and Machado, J.A.F. 1999. GMM inference when the number of moment conditions is large. J. Econom. 93(2): 327-344. doi:10.1016/S0304-4076(99)00014-7.
-
(1999)
J. Econom
, vol.93
, Issue.2
, pp. 327-344
-
-
Koenker, R.1
Machado, J.A.F.2
-
23
-
-
33044492180
-
Virtual population analysis: A practical manual for stock assessment
-
Rome, Italy
-
Lassen, H., and Medley, P. 2000. Virtual population analysis: a practical manual for stock assessment. FAO Fish. Tech. Pap. No. 400, Rome, Italy.
-
(2000)
FAO Fish. Tech. Pap
, Issue.400
-
-
Lassen, H.1
Medley, P.2
-
25
-
-
0024160928
-
Integrated stochastic virtual population analysis: Estimates and their precision of fishing mortalities and stock sizes for the
-
doi:10.1093/icesjms/44.3.217
-
Lewy, P. 1988. Integrated stochastic virtual population analysis: estimates and their precision of fishing mortalities and stock sizes for the North Sea whiting stock. ICES J. Mar. Sci. 44(3): 217-228. doi:10.1093/icesjms/44.3.217.
-
(1988)
North Sea Whiting Stock. ICES J. Mar. Sci
, vol.44
, Issue.3
, pp. 217-228
-
-
Lewy, P.1
-
26
-
-
0033180408
-
The retrospective problem in sequential population analysis: An investigation using cod fishery and simulated data
-
doi:10.1006/jmsc.1999.0481
-
Mohn, R. 1999. The retrospective problem in sequential population analysis: an investigation using cod fishery and simulated data. ICES J. Mar. Sci. 56(4): 473-488. doi:10.1006/jmsc.1999.0481.
-
(1999)
ICES. J. Mar. Sci
, vol.56
, Issue.4
, pp. 473-488
-
-
Mohn, R.1
-
27
-
-
0029520238
-
Statistical analysis of catchat-age data with correlated errors
-
doi:10.1139/f95-123
-
Myers, R.A., and Cadigan, N.G. 1995. Statistical analysis of catchat-age data with correlated errors. Can. J. Fish. Aquat. Sci. 52: 1265-1273. doi:10.1139/f95-123.
-
(1995)
Can. J. Fish. Aquat. Sci
, vol.52
, pp. 1265-1273
-
-
Myers, R.A.1
Cadigan, N.G.2
-
28
-
-
0036191437
-
Comparison of the frequentist properties of Bayes and the maximum likelihood estimators in an age-structured fish stock assessment model
-
doi:10.1139/f01-204
-
Nielsen, N.A., and Lewy, P. 2001. Comparison of the frequentist properties of Bayes and the maximum likelihood estimators in an age-structured fish stock assessment model. Can. J. Fish. Aquat. Sci. 59(1): 136-143. doi:10.1139/f01-204.
-
(2001)
Can. J. Fish. Aquat. Sci
, vol.59
, Issue.1
, pp. 136-143
-
-
Nielsen, N.A.1
Lewy, P.2
-
29
-
-
0032191949
-
Assessing fish stocks when catches are miseported: Model, simulation tests, and application to cod, haddock, and whiting in the ICES area
-
doi:10.1006/jmsc.1998.0351
-
Patterson, K.R. 1998. Assessing fish stocks when catches are miseported: model, simulation tests, and application to cod, haddock, and whiting in the ICES area. ICES J. Mar. Sci. 55(5): 878-891. doi:10.1006/jmsc.1998.0351.
-
(1998)
ICES J. Mar. Sci
, vol.55
, Issue.5
, pp. 878-891
-
-
Patterson, K.R.1
-
30
-
-
0012866606
-
-
Report to INP (El Instituto Nacional de Pesca), Guayaquil, Ecuador. Available from, [in Spanish]
-
Patterson, K.R., Castello, M., Santos, M., and Barcia, M. 1990. Validation and recomputation of catch and effort data in the nearshore fleet of Ecuador for the period 1981-1989. Report to INP (El Instituto Nacional de Pesca), Guayaquil, Ecuador. Available from www.inp.gov.ec [in Spanish].
-
(1990)
Validation and Recomputation of Catch and Effort Data In the Nearshore Fleet of Ecuador For the Period 1981-1989
-
-
Patterson, K.R.1
Castello, M.2
Santos, M.3
Barcia, M.4
-
31
-
-
0034891029
-
Estimating uncertainty in fish stock assessment and forecasting
-
doi:10.1046/j.1467-2960.2001.00042.x
-
Patterson, K.R., Cook, R., Darby, C., Gavaris, S., Kell, L., Lewy, P., Mesnil, B., Punt, A., Restrepo, V., Skagen, D.W., and Stefánsson, G. 2001. Estimating uncertainty in fish stock assessment and forecasting. Fish Fish. 2: 125-157. doi:10.1046/j.1467-2960.2001.00042.x.
-
(2001)
Fish Fish
, vol.2
, pp. 125-157
-
-
Patterson, K.R.1
Cook, R.2
Darby, C.3
Gavaris, S.4
Kell, L.5
Lewy, P.6
Mesnil, B.7
Punt, A.8
Restrepo, V.9
Skagen, D.W.10
Stefánsson, G.11
-
32
-
-
0035969546
-
China caught out as model shows net fall in fish
-
doi:10.1038/35107216.PMID:11734811
-
Pearson, H. 2001. China caught out as model shows net fall in fish. Nature (London), 414(6863): 477. doi:10.1038/35107216.PMID:11734811.
-
(2001)
Nature (London)
, vol.414
, Issue.6863
, pp. 477
-
-
Pearson, H.1
-
33
-
-
0012810221
-
-
Contract Report to the Overseas Development Administration, United Kingdom. Marine Resources Assessment Group, Imperial College, London
-
Pitcher, T.J., and Stokes, T.K. 1990. Assessment of Ecuadorean commercial pelagic fisheries. Contract Report to the Overseas Development Administration, United Kingdom. Marine Resources Assessment Group, Imperial College, London.
-
(1990)
Assessment of Ecuadorean Commercial Pelagic Fisheries
-
-
Pitcher, T.J.1
Stokes, T.K.2
-
34
-
-
0036967970
-
Estimating illegal and unreported catches from marine ecosystems: A basis for change
-
doi:10.1046/j.1467-2979.2002.00093.x
-
Pitcher, T.J., Watson, R., Forrest, R., Valtýsson, H.P., and Guénette, S. 2002. Estimating illegal and unreported catches from marine ecosystems: a basis for change. Fish Fish. 3: 317-339. doi:10.1046/j.1467-2979.2002.00093.x.
-
(2002)
Fish Fish
, vol.3
, pp. 317-339
-
-
Pitcher, T.J.1
Watson, R.2
Forrest, R.3
Valtýsson, H.P.4
Guénette, S.5
-
35
-
-
0002934804
-
An investigation of the accuracy of virtual population analysis using cohort analysis
-
Pope, J.G. 1972. An investigation of the accuracy of virtual population analysis using cohort analysis. Res. Bull. Int. Comm. Northw. Atl. Fish. 9: 65-74.
-
(1972)
Res. Bull. Int. Comm. Northw. Atl. Fish
, vol.9
, pp. 65-74
-
-
Pope, J.G.1
-
36
-
-
0010329952
-
Collecting fisheries assessment data
-
2nd ed. Edited by J.A. Gulland. John Wiley, Chichester, UK
-
Pope, J.G. 1988. Collecting fisheries assessment data. In Fish population dynamics. 2nd ed. Edited by J.A. Gulland. John Wiley, Chichester, UK. pp. 63-82.
-
(1988)
Fish Population Dynamics
, pp. 63-82
-
-
Pope, J.G.1
-
37
-
-
33646887252
-
Including discard data in fisheries stock assessments: Two case studies from south-eastern Australia
-
doi:10.1016/j.fishres.2006.04.007
-
Punt, A.E., Smith, D.C., Tuck, G.N., and Methot, R.D. 2006. Including discard data in fisheries stock assessments: two case studies from south-eastern Australia. Fish. Res. 79(3): 239-250. doi:10.1016/j.fishres.2006.04.007.
-
(2006)
Fish. Res
, vol.79
, Issue.3
, pp. 239-250
-
-
Punt, A.E.1
Smith, D.C.2
Tuck, G.N.3
Methot, R.D.4
-
39
-
-
21244460770
-
Comparison of virtual population analysis and statistical kill-at-age analysis for a recreational, kill-dominated fishery
-
doi:10.1139/f04-228
-
Radomski, P., Bence, J.R., and Quinn, T.J., II. 2005. Comparison of virtual population analysis and statistical kill-at-age analysis for a recreational, kill-dominated fishery. Can. J. Fish. Aquat. Sci. 62(2): 436-452. doi:10.1139/f04-228.
-
(2005)
Can. J. Fish. Aquat. Sci
, vol.62
, Issue.2
, pp. 436-452
-
-
Radomski, P.1
Bence, J.R.2
Quinn II, T.J.3
-
40
-
-
0042324907
-
Appendix 3: St. Andrews (S. Gavaris) version of ADAPT. Estimation of population abundance
-
Rivard, D., and Gavaris, S. 2003. Appendix 3: St. Andrews (S. Gavaris) version of ADAPT. Estimation of population abundance. NAFO (Northwest Atl. Fish. Organ.) Sci. Counc. Stud. 36: 201-249.
-
(2003)
NAFO (Northwest Atl. Fish. Organ.) Sci. Counc. Stud
, vol.36
, pp. 201-249
-
-
Rivard, D.1
Gavaris, S.2
-
42
-
-
0032720855
-
Extended survivors analysis: An improved method for the analysis of catch-at-age data and abundance indices
-
doi:10.1016/j.fishres.2008.12.021
-
Shepherd, J.G. 1999. Extended survivors analysis: an improved method for the analysis of catch-at-age data and abundance indices. ICES J. Mar. Sci. 59: 592-605. doi:10.1016/j.fishres.2008.12.021.
-
(1999)
ICES J. Mar. Sci
, vol.59
, pp. 592-605
-
-
Shepherd, J.G.1
-
43
-
-
0035021409
-
Natural mortality of cod (Gadus morhua) in the southern Gulf of St. Lawrence
-
doi:10.1006/jmsc.1999.0490
-
Sinclair, A.F. 2001. Natural mortality of cod (Gadus morhua) in the southern Gulf of St. Lawrence. ICES J. Mar. Sci. 58(1): 1-10. doi:10.1006/jmsc.1999.0490.
-
(2001)
ICES J. Mar. Sci
, vol.58
, Issue.1
, pp. 1-10
-
-
Sinclair, A.F.1
-
44
-
-
0002127655
-
Why have groundfish stocks declined?
-
Edited by J. Boreman, B.S. Nakashima, J.A. Wilson, and R.L. Kendall. American Fisheries Society, Bethesda, Maryland
-
Sinclair, A.F., and Murawski, S.A. 1997. Why have groundfish stocks declined? In Northwest Atlantic groundfish: perspectives on a fishery collapse. Edited by J. Boreman, B.S. Nakashima, J.A. Wilson, and R.L. Kendall. American Fisheries Society, Bethesda, Maryland. pp. 71-93.
-
(1997)
Northwest Atlantic Groundfish: Perspectives On a Fishery Collapse
, pp. 71-93
-
-
Sinclair, A.F.1
Murawski, S.A.2
-
45
-
-
56249125642
-
Predicted extirpation of the dominant demersal fish in a large marine ecosystem: Atlantic cod (Gadus morhua) in the southern Gulf of St. Lawrence
-
doi:10.1139/F08-175
-
Swain, D.P., and Chouinard, G.A. 2008. Predicted extirpation of the dominant demersal fish in a large marine ecosystem: Atlantic cod (Gadus morhua) in the southern Gulf of St. Lawrence. Can. J. Fish. Aquat. Sci. 65(11): 2315-2319. doi:10.1139/F08-175.
-
(2008)
Can. J. Fish. Aquat. Sci
, vol.65
, Issue.11
, pp. 2315-2319
-
-
Swain, D.P.1
Chouinard, G.A.2
-
47
-
-
0036800798
-
Comparison of logbook reports of incidental blue shark catch rates by Hawaii-based longline vessels to fishery observer data by application of a generalized additive model
-
doi:10.1016/S0165-7836(01)00361-7
-
Walsh, W.A., Kleiber, P., and McCracken, M. 2002. Comparison of logbook reports of incidental blue shark catch rates by Hawaii-based longline vessels to fishery observer data by application of a generalized additive model. Fish. Res. 58(1): 79-94. doi:10.1016/S0165-7836(01)00361-7.
-
(2002)
Fish. Res
, vol.58
, Issue.1
, pp. 79-94
-
-
Walsh, W.A.1
Kleiber, P.2
McCracken, M.3
-
48
-
-
77958075650
-
Corrected catch histories and logbook accuracy for billfishes (Istiophoridae) in the Hawaii-based longline fishery
-
No. NMFS-PIFSC-13
-
Walsh, W.A., Bigelow, K.A., and Ito, R.Y. 2007. Corrected catch histories and logbook accuracy for billfishes (Istiophoridae) in the Hawaii-based longline fishery. NOAA Tech. Memo. No. NMFS-PIFSC-13.
-
(2007)
NOAA Tech. Memo
-
-
Walsh, W.A.1
Bigelow, K.A.2
Ito, R.Y.3
|