메뉴 건너뛰기




Volumn 403, Issue 4, 2010, Pages 495-504

Propensities of Aromatic Amino Acids versus Leucine and Proline to Induce Residual Structure in the Denatured-State Ensemble of Iso-1-cytochrome c

Author keywords

Chain stiffness; Denatured states; Loop formation; Protein folding; Residual structure

Indexed keywords

ALANINE; AROMATIC AMINO ACID; CYTOCHROME C; GUANIDINE; HISTIDINE; ISOCYTOCHROME C1; LEUCINE; LYSINE; PHENYLALANINE; PROLINE; TRYPTOPHAN; UNCLASSIFIED DRUG; CYC1 PROTEIN, S CEREVISIAE; RECOMBINANT PROTEIN; SACCHAROMYCES CEREVISIAE PROTEIN;

EID: 77957918625     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2010.09.004     Document Type: Article
Times cited : (11)

References (70)
  • 1
    • 33846913510 scopus 로고    scopus 로고
    • Atomic-level characterization of disordered protein ensembles
    • Mittag T., Forman-Kay J.D. Atomic-level characterization of disordered protein ensembles. Curr. Opin. Struct. Biol. 2007, 17:3-14.
    • (2007) Curr. Opin. Struct. Biol. , vol.17 , pp. 3-14
    • Mittag, T.1    Forman-Kay, J.D.2
  • 2
    • 60349087841 scopus 로고    scopus 로고
    • Biophysical characterization of intrinsically disordered proteins
    • Eliezer D. Biophysical characterization of intrinsically disordered proteins. Curr. Opin. Struct. Biol. 2009, 19:23-30.
    • (2009) Curr. Opin. Struct. Biol. , vol.19 , pp. 23-30
    • Eliezer, D.1
  • 3
    • 0026672305 scopus 로고
    • NMR determination of residual structure in a urea-denatured protein, the 434-repressor
    • Neri D., Billeter M., Wider G., Wuthrich K. NMR determination of residual structure in a urea-denatured protein, the 434-repressor. Science 1992, 257:1559-1563.
    • (1992) Science , vol.257 , pp. 1559-1563
    • Neri, D.1    Billeter, M.2    Wider, G.3    Wuthrich, K.4
  • 4
    • 0037456298 scopus 로고    scopus 로고
    • The complete folding pathway of a protein from nanoseconds to microseconds
    • Mayor U., Guydosh N.R., Johnson C.M., Grossmann J.G., Sato S., Jas G.S., et al. The complete folding pathway of a protein from nanoseconds to microseconds. Nature 2003, 421:863-867.
    • (2003) Nature , vol.421 , pp. 863-867
    • Mayor, U.1    Guydosh, N.R.2    Johnson, C.M.3    Grossmann, J.G.4    Sato, S.5    Jas, G.S.6
  • 5
    • 58049200780 scopus 로고    scopus 로고
    • Extensive formation of off-pathway species during folding of an α-β parallel protein is due to docking of (non)native structure elements in unfolded molecules
    • Nabuurs S.M., Westphal A.H., van Mierlo C.P.M. Extensive formation of off-pathway species during folding of an α-β parallel protein is due to docking of (non)native structure elements in unfolded molecules. J. Am. Chem. Soc. 2008, 130:16914-16920.
    • (2008) J. Am. Chem. Soc. , vol.130 , pp. 16914-16920
    • Nabuurs, S.M.1    Westphal, A.H.2    van Mierlo, C.P.M.3
  • 6
    • 15244342213 scopus 로고    scopus 로고
    • Formation of native and non-native interactions in ensembles of denatured ACBP molecules from paramagnetic relaxation enhancement studies
    • Kristjansdottir S., Lindorff-Larsen K., Fieber W., Dobson C.M., Vendruscolo M., Poulsen F.M. Formation of native and non-native interactions in ensembles of denatured ACBP molecules from paramagnetic relaxation enhancement studies. J. Mol. Biol. 2005, 347:1053-1062.
    • (2005) J. Mol. Biol. , vol.347 , pp. 1053-1062
    • Kristjansdottir, S.1    Lindorff-Larsen, K.2    Fieber, W.3    Dobson, C.M.4    Vendruscolo, M.5    Poulsen, F.M.6
  • 8
    • 0036389787 scopus 로고    scopus 로고
    • Mapping long-range contacts in a highly unfolded protein
    • Lietzow M.A., Jamin M., Dyson H.J., Wright P.E. Mapping long-range contacts in a highly unfolded protein. J. Mol. Biol. 2002, 322:655-662.
    • (2002) J. Mol. Biol. , vol.322 , pp. 655-662
    • Lietzow, M.A.1    Jamin, M.2    Dyson, H.J.3    Wright, P.E.4
  • 9
    • 33744470104 scopus 로고    scopus 로고
    • Characterization of the unfolded state of bovine α-lactalbumin and comparison with unfolded states of homologous proteins
    • Wirmer J., Berk H., Ugolini R., Redfield C., Schwalbe H. Characterization of the unfolded state of bovine α-lactalbumin and comparison with unfolded states of homologous proteins. Protein Sci. 2006, 15:1397-1407.
    • (2006) Protein Sci. , vol.15 , pp. 1397-1407
    • Wirmer, J.1    Berk, H.2    Ugolini, R.3    Redfield, C.4    Schwalbe, H.5
  • 10
    • 8844259690 scopus 로고    scopus 로고
    • Protein interactions: modulation of compactness and long-range interactions of unfolded lysozyme by single point mutations
    • Wirmer J., Schloerb C., Klein-Seetharaman J., Hirano R., Ueda T., Imoto T., Schwalbe H. Protein interactions: modulation of compactness and long-range interactions of unfolded lysozyme by single point mutations. Angew. Chem. Int. Ed. 2004, 43:5780-5785.
    • (2004) Angew. Chem. Int. Ed. , vol.43 , pp. 5780-5785
    • Wirmer, J.1    Schloerb, C.2    Klein-Seetharaman, J.3    Hirano, R.4    Ueda, T.5    Imoto, T.6    Schwalbe, H.7
  • 12
    • 0037159208 scopus 로고    scopus 로고
    • Molecular hinges in protein folding: the urea-denatured state of apomyoglobin
    • Schwarzinger S., Wright P.E., Dyson H.J. Molecular hinges in protein folding: the urea-denatured state of apomyoglobin. Biochemistry 2002, 41:12681-12686.
    • (2002) Biochemistry , vol.41 , pp. 12681-12686
    • Schwarzinger, S.1    Wright, P.E.2    Dyson, H.J.3
  • 13
    • 51549105097 scopus 로고    scopus 로고
    • The low-pH unfolded state of the C-terminal domain of the ribosomal protein L9 contains significant secondary structure in the absence of denaturant but is no more compact than the low-pH urea unfolded state
    • Shan B., Bhattacharya S., Eliezer D., Raleigh D.P. The low-pH unfolded state of the C-terminal domain of the ribosomal protein L9 contains significant secondary structure in the absence of denaturant but is no more compact than the low-pH urea unfolded state. Biochemistry 2008, 47:9565-9573.
    • (2008) Biochemistry , vol.47 , pp. 9565-9573
    • Shan, B.1    Bhattacharya, S.2    Eliezer, D.3    Raleigh, D.P.4
  • 14
    • 0030900199 scopus 로고    scopus 로고
    • NMR studies of unfolded states of an SH3 domain in aqueous solution and denaturing conditions
    • Zhang O., Forman-Kay J.D. NMR studies of unfolded states of an SH3 domain in aqueous solution and denaturing conditions. Biochemistry 1997, 36:3959-3970.
    • (1997) Biochemistry , vol.36 , pp. 3959-3970
    • Zhang, O.1    Forman-Kay, J.D.2
  • 15
    • 51649087154 scopus 로고    scopus 로고
    • Effects of denaturants and osmolytes on proteins are accurately predicted by the molecular transfer model
    • O'Brien E.P., Ziv G., Haran G., Brooks B.R., Thirumalai D. Effects of denaturants and osmolytes on proteins are accurately predicted by the molecular transfer model. Proc. Natl Acad. Sci. USA 2008, 105:13403-13408.
    • (2008) Proc. Natl Acad. Sci. USA , vol.105 , pp. 13403-13408
    • O'Brien, E.P.1    Ziv, G.2    Haran, G.3    Brooks, B.R.4    Thirumalai, D.5
  • 16
    • 33846498387 scopus 로고    scopus 로고
    • Thermodynamics of protein denatured states
    • Bowler B.E. Thermodynamics of protein denatured states. Mol. BioSyst. 2007, 3:88-99.
    • (2007) Mol. BioSyst. , vol.3 , pp. 88-99
    • Bowler, B.E.1
  • 17
    • 22244458003 scopus 로고    scopus 로고
    • Charge-charge interactions in the denatured state influence the folding kinetics of ribonuclease Sa
    • Trefethen J.M., Pace C.N., Scholtz J.M., Brems D.N. Charge-charge interactions in the denatured state influence the folding kinetics of ribonuclease Sa. Protein Sci. 2005, 14:1934-1938.
    • (2005) Protein Sci. , vol.14 , pp. 1934-1938
    • Trefethen, J.M.1    Pace, C.N.2    Scholtz, J.M.3    Brems, D.N.4
  • 18
    • 0033852796 scopus 로고    scopus 로고
    • Charge-charge interactions influence the denatured state ensemble and contribute to protein stability
    • Pace C.N., Alston R.W., Shaw K.L. Charge-charge interactions influence the denatured state ensemble and contribute to protein stability. Protein Sci. 2000, 9:1395-1398.
    • (2000) Protein Sci. , vol.9 , pp. 1395-1398
    • Pace, C.N.1    Alston, R.W.2    Shaw, K.L.3
  • 19
    • 62649138787 scopus 로고    scopus 로고
    • Experimental characterization of the denatured state ensemble of proteins
    • Cho J.H., Raleigh D.P. Experimental characterization of the denatured state ensemble of proteins. Methods Mol. Biol. (Totowa, NJ) 2009, 490:339-351.
    • (2009) Methods Mol. Biol. (Totowa, NJ) , vol.490 , pp. 339-351
    • Cho, J.H.1    Raleigh, D.P.2
  • 20
    • 25144470141 scopus 로고    scopus 로고
    • Mutational analysis demonstrates that specific electrostatic interactions can play a key role in the denatured state ensemble of proteins
    • Cho J.H., Raleigh D.P. Mutational analysis demonstrates that specific electrostatic interactions can play a key role in the denatured state ensemble of proteins. J. Mol. Biol. 2005, 353:174-185.
    • (2005) J. Mol. Biol. , vol.353 , pp. 174-185
    • Cho, J.H.1    Raleigh, D.P.2
  • 21
    • 1942521649 scopus 로고    scopus 로고
    • Thermodynamics and kinetics of non-native interactions in protein folding: a single point mutant significantly stabilizes the N-terminal domain of L9 by modulating non-native interactions in the denatured state
    • Cho J.H., Sato S., Raleigh D.P. Thermodynamics and kinetics of non-native interactions in protein folding: a single point mutant significantly stabilizes the N-terminal domain of L9 by modulating non-native interactions in the denatured state. J. Mol. Biol. 2004, 338:827-837.
    • (2004) J. Mol. Biol. , vol.338 , pp. 827-837
    • Cho, J.H.1    Sato, S.2    Raleigh, D.P.3
  • 22
    • 0033551039 scopus 로고    scopus 로고
    • a values and the pH dependent stability of the N-terminal domain of L9 as probes of electrostatic interactions in the denatured state. Differentiation between local and nonlocal interactions
    • a values and the pH dependent stability of the N-terminal domain of L9 as probes of electrostatic interactions in the denatured state. Differentiation between local and nonlocal interactions. Biochemistry 1999, 38:4896-4903.
    • (1999) Biochemistry , vol.38 , pp. 4896-4903
    • Kuhlman, B.1    Luisi, D.L.2    Young, P.3    Raleigh, D.P.4
  • 23
    • 64349099192 scopus 로고    scopus 로고
    • Thermodynamic approaches to understanding protein denatured states
    • Nova Science Publishers, Hauppage, NY, T.P. Creamer (Ed.)
    • Bowler B.E. Thermodynamic approaches to understanding protein denatured states. Unfolded Proteins: From Denatured to Intrinsically Disordered 2008, 23-50. Nova Science Publishers, Hauppage, NY. T.P. Creamer (Ed.).
    • (2008) Unfolded Proteins: From Denatured to Intrinsically Disordered , pp. 23-50
    • Bowler, B.E.1
  • 24
    • 0025317840 scopus 로고
    • Reverse hydrophobic effects relieved by amino-acid substitutions at a protein surface
    • Pakula A.A., Sauer R.T. Reverse hydrophobic effects relieved by amino-acid substitutions at a protein surface. Nature 1990, 344:363-364.
    • (1990) Nature , vol.344 , pp. 363-364
    • Pakula, A.A.1    Sauer, R.T.2
  • 25
    • 0028913567 scopus 로고
    • The effects of hydrophilic to hydrophobic surface mutations on the denatured state of iso-1-cytochrome c: investigation of aliphatic residues
    • Herrmann L., Bowler B.E., Dong A., Caughey W.S. The effects of hydrophilic to hydrophobic surface mutations on the denatured state of iso-1-cytochrome c: investigation of aliphatic residues. Biochemistry 1995, 34:3040-3047.
    • (1995) Biochemistry , vol.34 , pp. 3040-3047
    • Herrmann, L.1    Bowler, B.E.2    Dong, A.3    Caughey, W.S.4
  • 26
    • 0027464611 scopus 로고
    • Destabilizing effects of replacing a surface lysine of cytochrome c with aromatic amino acids: implications for the denatured state
    • Bowler B.E., May K., Zaragoza T., York P., Dong A., Caughey W.S. Destabilizing effects of replacing a surface lysine of cytochrome c with aromatic amino acids: implications for the denatured state. Biochemistry 1993, 32:183-190.
    • (1993) Biochemistry , vol.32 , pp. 183-190
    • Bowler, B.E.1    May, K.2    Zaragoza, T.3    York, P.4    Dong, A.5    Caughey, W.S.6
  • 27
    • 0035078662 scopus 로고    scopus 로고
    • Amino-acid substitutions at the fully exposed P1 site of bovine pancreatic trypsin inhibitor affect its stability
    • Krowarsch D., Otlewski J. Amino-acid substitutions at the fully exposed P1 site of bovine pancreatic trypsin inhibitor affect its stability. Protein Sci. 2001, 10:715-724.
    • (2001) Protein Sci. , vol.10 , pp. 715-724
    • Krowarsch, D.1    Otlewski, J.2
  • 31
    • 67650684936 scopus 로고    scopus 로고
    • Structure and disorder in an unfolded state under nondenaturing conditions from ensemble models consistent with a large number of experimental restraints
    • Marsh J.A., Forman-Kay J.D. Structure and disorder in an unfolded state under nondenaturing conditions from ensemble models consistent with a large number of experimental restraints. J. Mol. Biol 2009, 391:359-374.
    • (2009) J. Mol. Biol , vol.391 , pp. 359-374
    • Marsh, J.A.1    Forman-Kay, J.D.2
  • 32
    • 33947133083 scopus 로고    scopus 로고
    • Improved structural characterizations of the drkN SH3 domain unfolded state suggest a compact ensemble with native-like and non-native structure
    • Marsh J.A., Neale C., Jack F.E., Choy W.Y., Lee A.Y., Crowhurst K.A., Forman-Kay J.D. Improved structural characterizations of the drkN SH3 domain unfolded state suggest a compact ensemble with native-like and non-native structure. J. Mol. Biol. 2007, 367:1494-1510.
    • (2007) J. Mol. Biol. , vol.367 , pp. 1494-1510
    • Marsh, J.A.1    Neale, C.2    Jack, F.E.3    Choy, W.Y.4    Lee, A.Y.5    Crowhurst, K.A.6    Forman-Kay, J.D.7
  • 33
    • 0041846681 scopus 로고    scopus 로고
    • Aromatic and methyl NOEs highlight hydrophobic clustering in the unfolded state of an SH3 domain
    • Crowhurst K.A., Forman-Kay J.D. Aromatic and methyl NOEs highlight hydrophobic clustering in the unfolded state of an SH3 domain. Biochemistry 2003, 42:8687-8695.
    • (2003) Biochemistry , vol.42 , pp. 8687-8695
    • Crowhurst, K.A.1    Forman-Kay, J.D.2
  • 34
    • 0036966026 scopus 로고    scopus 로고
    • Cooperative interactions and a non-native buried Trp in the unfolded state of an SH3 domain
    • Crowhurst K.A., Tollinger M., Forman-Kay J.D. Cooperative interactions and a non-native buried Trp in the unfolded state of an SH3 domain. J. Mol. Biol. 2002, 322:163-178.
    • (2002) J. Mol. Biol. , vol.322 , pp. 163-178
    • Crowhurst, K.A.1    Tollinger, M.2    Forman-Kay, J.D.3
  • 35
    • 33846941955 scopus 로고    scopus 로고
    • Oxygen as a paramagnetic probe of clustering and solvent exposure in folded and unfolded states of an SH3 domain
    • Bezsonova I., Evanics F., Marsh J.A., Forman-Kay J.D., Prosser R.S. Oxygen as a paramagnetic probe of clustering and solvent exposure in folded and unfolded states of an SH3 domain. J. Am. Chem. Soc. 2007, 129:1826-1835.
    • (2007) J. Am. Chem. Soc. , vol.129 , pp. 1826-1835
    • Bezsonova, I.1    Evanics, F.2    Marsh, J.A.3    Forman-Kay, J.D.4    Prosser, R.S.5
  • 36
    • 0034628913 scopus 로고    scopus 로고
    • Towards a complete description of the structural and dynamic properties of the denatured state of barnase and the role of residual structure in folding
    • Wong K.B., Clarke J., Bond C.J., Neira J.L., Freund S.M.V., Fersht A.R., Daggett V. Towards a complete description of the structural and dynamic properties of the denatured state of barnase and the role of residual structure in folding. J. Mol. Biol. 2000, 296:1257-1282.
    • (2000) J. Mol. Biol. , vol.296 , pp. 1257-1282
    • Wong, K.B.1    Clarke, J.2    Bond, C.J.3    Neira, J.L.4    Freund, S.M.V.5    Fersht, A.R.6    Daggett, V.7
  • 37
    • 26444608613 scopus 로고    scopus 로고
    • Ensemble versus single-molecule protein unfolding
    • Day R., Daggett V. Ensemble versus single-molecule protein unfolding. Proc. Natl Acad. Sci. USA 2005, 102:13445-13450.
    • (2005) Proc. Natl Acad. Sci. USA , vol.102 , pp. 13445-13450
    • Day, R.1    Daggett, V.2
  • 38
    • 0035836687 scopus 로고    scopus 로고
    • Protein folding from a highly disordered denatured state: the folding pathway of chymotrypsin inhibitor 2 at atomic resolution
    • Kazmirski S.L., Wong K.B., Freund S.M.V., Tan Y.J., Fersht A.R., Daggett V. Protein folding from a highly disordered denatured state: the folding pathway of chymotrypsin inhibitor 2 at atomic resolution. Proc. Natl Acad. Sci. USA 2001, 98:4349-4354.
    • (2001) Proc. Natl Acad. Sci. USA , vol.98 , pp. 4349-4354
    • Kazmirski, S.L.1    Wong, K.B.2    Freund, S.M.V.3    Tan, Y.J.4    Fersht, A.R.5    Daggett, V.6
  • 39
    • 0000484499 scopus 로고
    • Hydrophobic parameters Π of amino acid side chains from the partitioning of N-acetyl-amino acid amides
    • Fauchère J.L., Pliška V. Hydrophobic parameters Π of amino acid side chains from the partitioning of N-acetyl-amino acid amides. Eur. J. Med. Chem. 1983, 18:369-375.
    • (1983) Eur. J. Med. Chem. , vol.18 , pp. 369-375
    • Fauchère, J.L.1    Pliška, V.2
  • 41
    • 0021691817 scopus 로고
    • Analysis of membrane and surface protein sequences with the hydrophobic moment plot
    • Eisenberg D., Schwarz E., Komaromy M., Wall R. Analysis of membrane and surface protein sequences with the hydrophobic moment plot. J. Mol. Biol. 1984, 179:125-142.
    • (1984) J. Mol. Biol. , vol.179 , pp. 125-142
    • Eisenberg, D.1    Schwarz, E.2    Komaromy, M.3    Wall, R.4
  • 42
    • 0014939368 scopus 로고
    • The solubility of amino acids, diglycine, and triglycine in aqueous guanidine hydrochloride solutions
    • Nozaki Y., Tanford C. The solubility of amino acids, diglycine, and triglycine in aqueous guanidine hydrochloride solutions. J. Biol. Chem. 1970, 245:1648-1652.
    • (1970) J. Biol. Chem. , vol.245 , pp. 1648-1652
    • Nozaki, Y.1    Tanford, C.2
  • 43
    • 0031584267 scopus 로고    scopus 로고
    • A histidine variant of yeast iso-1-cytochrome c that strongly affects the energetics of the denatured state
    • Godbole S., Bowler B.E. A histidine variant of yeast iso-1-cytochrome c that strongly affects the energetics of the denatured state. J. Mol. Biol. 1997, 268:816-821.
    • (1997) J. Mol. Biol. , vol.268 , pp. 816-821
    • Godbole, S.1    Bowler, B.E.2
  • 44
    • 0035979801 scopus 로고    scopus 로고
    • Denatured state thermodynamics: residual structure, chain stiffness and scaling factors
    • Hammack B.N., Smith C.R., Bowler B.E. Denatured state thermodynamics: residual structure, chain stiffness and scaling factors. J. Mol. Biol. 2001, 311:1091-1104.
    • (2001) J. Mol. Biol. , vol.311 , pp. 1091-1104
    • Hammack, B.N.1    Smith, C.R.2    Bowler, B.E.3
  • 45
    • 2342544028 scopus 로고    scopus 로고
    • Conformational properties of the iso-1-cytochrome c denatured state: dependence on guanidine hydrochloride concentration
    • Wandschneider E., Bowler B.E. Conformational properties of the iso-1-cytochrome c denatured state: dependence on guanidine hydrochloride concentration. J. Mol. Biol. 2004, 339:185-197.
    • (2004) J. Mol. Biol. , vol.339 , pp. 185-197
    • Wandschneider, E.1    Bowler, B.E.2
  • 46
    • 50449111518 scopus 로고    scopus 로고
    • The intrinsic conformational propensities of the 20 naturally occurring amino acids and reflection of these propensities in proteins
    • Beck D.A.C., Alonso D.O.V., Inoyama D., Daggett V. The intrinsic conformational propensities of the 20 naturally occurring amino acids and reflection of these propensities in proteins. Proc. Natl Acad. Sci. USA 2008, 105:12259-12264.
    • (2008) Proc. Natl Acad. Sci. USA , vol.105 , pp. 12259-12264
    • Beck, D.A.C.1    Alonso, D.O.V.2    Inoyama, D.3    Daggett, V.4
  • 47
    • 34447624167 scopus 로고    scopus 로고
    • Sequence composition effects on denatured state loop formation in iso-1-cytochrome c variants: polyalanine versus polyglycine inserts
    • Tzul F.O., Kurchan E., Bowler B.E. Sequence composition effects on denatured state loop formation in iso-1-cytochrome c variants: polyalanine versus polyglycine inserts. J. Mol. Biol. 2007, 371:577-584.
    • (2007) J. Mol. Biol. , vol.371 , pp. 577-584
    • Tzul, F.O.1    Kurchan, E.2    Bowler, B.E.3
  • 48
    • 67349120000 scopus 로고    scopus 로고
    • Importance of contact persistence in denatured state loop formation: kinetic insights into sequence effects on nucleation early in folding
    • Tzul F.O., Bowler B.E. Importance of contact persistence in denatured state loop formation: kinetic insights into sequence effects on nucleation early in folding. J. Mol. Biol. 2009, 390:124-134.
    • (2009) J. Mol. Biol. , vol.390 , pp. 124-134
    • Tzul, F.O.1    Bowler, B.E.2
  • 49
    • 3843114319 scopus 로고
    • Intramolecular reaction in polycondensations. I. The theory of linear systems
    • Jacobson H., Stockmayer W.H. Intramolecular reaction in polycondensations. I. The theory of linear systems. J. Chem. Phys. 1950, 18:1600-1606.
    • (1950) J. Chem. Phys. , vol.18 , pp. 1600-1606
    • Jacobson, H.1    Stockmayer, W.H.2
  • 50
    • 0014107494 scopus 로고
    • Conformational energy and configurational statistics of poly-l-proline
    • Schimmel P.R., Flory P.J. Conformational energy and configurational statistics of poly-l-proline. Proc. Natl Acad. Sci. USA 1967, 58:52-59.
    • (1967) Proc. Natl Acad. Sci. USA , vol.58 , pp. 52-59
    • Schimmel, P.R.1    Flory, P.J.2
  • 51
    • 0037129949 scopus 로고    scopus 로고
    • Spectroscopic properties of a mitochondrial cytochrome c with a single thioether bond to the heme prosthetic group
    • Rosell F.I., Mauk A.G. Spectroscopic properties of a mitochondrial cytochrome c with a single thioether bond to the heme prosthetic group. Biochemistry 2002, 41:7811-7818.
    • (2002) Biochemistry , vol.41 , pp. 7811-7818
    • Rosell, F.I.1    Mauk, A.G.2
  • 52
    • 0032574759 scopus 로고    scopus 로고
    • Bacterial expression of a mitochondrial cytochrome c: trimethylation of Lys72 in yeast iso-1-cytochrome c and the alkaline conformational transition
    • Pollock W.B.R., Rosell F.I., Twitchett M.B., Dumont M.E., Mauk A.G. Bacterial expression of a mitochondrial cytochrome c: trimethylation of Lys72 in yeast iso-1-cytochrome c and the alkaline conformational transition. Biochemistry 1998, 37:6124-6131.
    • (1998) Biochemistry , vol.37 , pp. 6124-6131
    • Pollock, W.B.R.1    Rosell, F.I.2    Twitchett, M.B.3    Dumont, M.E.4    Mauk, A.G.5
  • 53
    • 0032488914 scopus 로고    scopus 로고
    • Cytochrome c folding traps are not due solely to histidine-heme ligation: direct demonstration of a role for N-terminal amino group-heme ligation
    • Hammack B., Godbole S., Bowler B.E. Cytochrome c folding traps are not due solely to histidine-heme ligation: direct demonstration of a role for N-terminal amino group-heme ligation. J. Mol. Biol. 1998, 275:719-724.
    • (1998) J. Mol. Biol. , vol.275 , pp. 719-724
    • Hammack, B.1    Godbole, S.2    Bowler, B.E.3
  • 54
    • 0037031261 scopus 로고    scopus 로고
    • Effects of topology and excluded volume on protein denatured state conformational properties
    • Smith C.R., Mateljevic N., Bowler B.E. Effects of topology and excluded volume on protein denatured state conformational properties. Biochemistry 2002, 41:10173-10181.
    • (2002) Biochemistry , vol.41 , pp. 10173-10181
    • Smith, C.R.1    Mateljevic, N.2    Bowler, B.E.3
  • 55
    • 14044257270 scopus 로고    scopus 로고
    • Communication of stabilizing energy between substructures of a protein
    • Kristinsson R., Bowler B.E. Communication of stabilizing energy between substructures of a protein. Biochemistry 2005, 44:2349-2359.
    • (2005) Biochemistry , vol.44 , pp. 2349-2359
    • Kristinsson, R.1    Bowler, B.E.2
  • 56
    • 77954942428 scopus 로고    scopus 로고
    • Denatured states of low complexity polypeptide sequences differ dramatically from those of foldable sequences
    • Tzul F.O., Bowler B.E. Denatured states of low complexity polypeptide sequences differ dramatically from those of foldable sequences. Proc. Natl Acad. Sci. USA 2010, 107:11364-11369.
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , pp. 11364-11369
    • Tzul, F.O.1    Bowler, B.E.2
  • 57
    • 26244436812 scopus 로고    scopus 로고
    • Kinetics of loop formation and breakage in the denatured state of iso-1-cytochrome c
    • Kurchan E., Roder H., Bowler B.E. Kinetics of loop formation and breakage in the denatured state of iso-1-cytochrome c. J. Mol. Biol. 2005, 353:730-743.
    • (2005) J. Mol. Biol. , vol.353 , pp. 730-743
    • Kurchan, E.1    Roder, H.2    Bowler, B.E.3
  • 58
    • 14944346760 scopus 로고    scopus 로고
    • Effect of proline and glycine residues on dynamics and barriers of loop formation in polypeptide chains
    • Krieger F., Möglich A., Kiefhaber T. Effect of proline and glycine residues on dynamics and barriers of loop formation in polypeptide chains. J. Am. Chem. Soc. 2005, 127:3346-3352.
    • (2005) J. Am. Chem. Soc. , vol.127 , pp. 3346-3352
    • Krieger, F.1    Möglich, A.2    Kiefhaber, T.3
  • 59
    • 0024260626 scopus 로고
    • Weakly polar interactions in proteins
    • Burley S.K., Petsko G.A. Weakly polar interactions in proteins. Adv. Protein Chem. 1988, 39:125-189.
    • (1988) Adv. Protein Chem. , vol.39 , pp. 125-189
    • Burley, S.K.1    Petsko, G.A.2
  • 60
    • 0028362042 scopus 로고
    • Energetics of interactions of aromatic hydrocarbons with water
    • Makhatadze G.I., Privalov P.L. Energetics of interactions of aromatic hydrocarbons with water. Biophys. Chem. 1994, 50:285-291.
    • (1994) Biophys. Chem. , vol.50 , pp. 285-291
    • Makhatadze, G.I.1    Privalov, P.L.2
  • 61
    • 0022419375 scopus 로고
    • Aromatic-aromatic interaction: a mechanism to stabilize proteins
    • Burley S.K., Petsko G.A. Aromatic-aromatic interaction: a mechanism to stabilize proteins. Science 1985, 229:23-28.
    • (1985) Science , vol.229 , pp. 23-28
    • Burley, S.K.1    Petsko, G.A.2
  • 62
    • 34848842845 scopus 로고    scopus 로고
    • Geometry of nonbonded interactions involving planar groups in proteins
    • Chakrabarti P., Bhattacharyya R. Geometry of nonbonded interactions involving planar groups in proteins. Prog. Biophys. Mol. Biol. 2007, 95:83-137.
    • (2007) Prog. Biophys. Mol. Biol. , vol.95 , pp. 83-137
    • Chakrabarti, P.1    Bhattacharyya, R.2
  • 64
    • 0343293808 scopus 로고    scopus 로고
    • An additional aromatic interaction improves the thermostability and thermophilicity of a mesophilic family 11 xylanase: structural basis and molecular study
    • Georis J., Esteves F.D.L., Lamotte-Brasseur J., Bougnet V., Devreese B., Giannotta F., et al. An additional aromatic interaction improves the thermostability and thermophilicity of a mesophilic family 11 xylanase: structural basis and molecular study. Protein Sci. 2000, 9:466-475.
    • (2000) Protein Sci. , vol.9 , pp. 466-475
    • Georis, J.1    Esteves, F.D.L.2    Lamotte-Brasseur, J.3    Bougnet, V.4    Devreese, B.5    Giannotta, F.6
  • 65
    • 0027398886 scopus 로고
    • The (i, i+4) Phe-His interaction studied in an alanine-based α-helix
    • Armstrong K.M., Fairman R., Baldwin R.L. The (i, i+4) Phe-His interaction studied in an alanine-based α-helix. J. Mol. Biol. 1993, 230:284-291.
    • (1993) J. Mol. Biol. , vol.230 , pp. 284-291
    • Armstrong, K.M.1    Fairman, R.2    Baldwin, R.L.3
  • 67
    • 26844500695 scopus 로고    scopus 로고
    • Interresidue contacts in proteins and protein-protein interfaces and their use in characterizing the homodimeric interface
    • Saha R.P., Bahadur R.P., Chakrabarti P. Interresidue contacts in proteins and protein-protein interfaces and their use in characterizing the homodimeric interface. J. Proteome Res. 2005, 4:1600-1609.
    • (2005) J. Proteome Res. , vol.4 , pp. 1600-1609
    • Saha, R.P.1    Bahadur, R.P.2    Chakrabarti, P.3
  • 69
    • 0038630483 scopus 로고    scopus 로고
    • Folding rates and low-entropy-loss routes of two-state proteins
    • Weikl T.R., Dill K.A. Folding rates and low-entropy-loss routes of two-state proteins. J. Mol. Biol. 2003, 329:585-598.
    • (2003) J. Mol. Biol. , vol.329 , pp. 585-598
    • Weikl, T.R.1    Dill, K.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.