-
1
-
-
10744231694
-
Stimulating the in situ activity of Geobacter species to remove uranium from the groundwater of a uranium-contaminated aquifer
-
Anderson R.T., et al. Stimulating the in situ activity of Geobacter species to remove uranium from the groundwater of a uranium-contaminated aquifer. Appl. Environ. Microbiol. 2003, 69:5884-5891.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 5884-5891
-
-
Anderson, R.T.1
-
2
-
-
0030712081
-
The GAF domain: an evolutionary link between diverse phototransducing proteins
-
Aravind L., Ponting C.P. The GAF domain: an evolutionary link between diverse phototransducing proteins. Trends Biochem. Sci. 1997, 22:458-459.
-
(1997)
Trends Biochem. Sci.
, vol.22
, pp. 458-459
-
-
Aravind, L.1
Ponting, C.P.2
-
3
-
-
70350141013
-
PilM/N/O/P proteins form an inner membrane complex that affects the stability of the Pseudomonas aeruginosa type IV pilus secretin
-
Ayers M., et al. PilM/N/O/P proteins form an inner membrane complex that affects the stability of the Pseudomonas aeruginosa type IV pilus secretin. J. Mol. Biol. 2009, 394:128-142.
-
(2009)
J. Mol. Biol.
, vol.394
, pp. 128-142
-
-
Ayers, M.1
-
5
-
-
0023147228
-
Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters
-
Berg O.G., von Hippel P.H. Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters. J. Mol. Biol. 1987, 193:723-750.
-
(1987)
J. Mol. Biol.
, vol.193
, pp. 723-750
-
-
Berg, O.G.1
von Hippel, P.H.2
-
6
-
-
0041530033
-
Genomic profiling of iron-responsive genes in Salmonella enterica serovar typhimurium by high-throughput screening of a random promoter library
-
Bjarnason J., Southward C.M., Surette M.G. Genomic profiling of iron-responsive genes in Salmonella enterica serovar typhimurium by high-throughput screening of a random promoter library. J. Bacteriol. 2003, 185:4973-4982.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 4973-4982
-
-
Bjarnason, J.1
Southward, C.M.2
Surette, M.G.3
-
7
-
-
33645107183
-
Short fuzzy tandem repeats in genomic sequences, identification, and possible role in regulation of gene expression
-
Boeva V., Regnier M., Papatsenko D., Makeev V. Short fuzzy tandem repeats in genomic sequences, identification, and possible role in regulation of gene expression. Bioinformatics 2006, 22:676-684.
-
(2006)
Bioinformatics
, vol.22
, pp. 676-684
-
-
Boeva, V.1
Regnier, M.2
Papatsenko, D.3
Makeev, V.4
-
8
-
-
0030026609
-
Dual function of PilS during transcriptional activation of the Pseudomonas aeruginosa pilin subunit gene
-
Boyd J.M., Lory S. Dual function of PilS during transcriptional activation of the Pseudomonas aeruginosa pilin subunit gene. J. Bacteriol. 1996, 178:831-839.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 831-839
-
-
Boyd, J.M.1
Lory, S.2
-
9
-
-
0022545682
-
Upstream activator sequences are present in the promoter of nitrogen fixation genes
-
Buck M., Miller S., Drummond M., Dixon R. Upstream activator sequences are present in the promoter of nitrogen fixation genes. Nat. Biotechnol. 1986, 320:374-378.
-
(1986)
Nat. Biotechnol.
, vol.320
, pp. 374-378
-
-
Buck, M.1
Miller, S.2
Drummond, M.3
Dixon, R.4
-
11
-
-
34047258047
-
A second paradigm for gene activation in bacteria
-
Buck M., et al. A second paradigm for gene activation in bacteria. Biochem. Soc. Trans. 2006, 34:1067-1071.
-
(2006)
Biochem. Soc. Trans.
, vol.34
, pp. 1067-1071
-
-
Buck, M.1
-
12
-
-
0141960322
-
Global mutational analysis of NtrC-like activators in Myxococcus xanthus: identifying activator mutants defective for motility and fruiting body development
-
Caberoy N.B., Welch R.D., Jakobsen J.S., Slater S.C., Garza A.G. Global mutational analysis of NtrC-like activators in Myxococcus xanthus: identifying activator mutants defective for motility and fruiting body development. J. Bacteriol. 2003, 185:6083-6094.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 6083-6094
-
-
Caberoy, N.B.1
Welch, R.D.2
Jakobsen, J.S.3
Slater, S.C.4
Garza, A.G.5
-
13
-
-
0030613727
-
The normally silent sigma54 promoters upstream of the pilE genes of both Neisseria gonorrhoeae and Neisseria meningitidis are functional when transferred to Pseudomonas aeruginosa
-
Carrick C.S., Fyfe J.A., Davies J.K. The normally silent sigma54 promoters upstream of the pilE genes of both Neisseria gonorrhoeae and Neisseria meningitidis are functional when transferred to Pseudomonas aeruginosa. Gene 1997, 198:89-97.
-
(1997)
Gene
, vol.198
, pp. 89-97
-
-
Carrick, C.S.1
Fyfe, J.A.2
Davies, J.K.3
-
14
-
-
0034607993
-
The genome of Neisseria gonorrhoeae retains the remnants of a two-component regulatory system that once controlled piliation
-
Carrick C.S., Fyfe J.A., Davies J.K. The genome of Neisseria gonorrhoeae retains the remnants of a two-component regulatory system that once controlled piliation. FEMS Microbiol. Lett. 2000, 186:197-201.
-
(2000)
FEMS Microbiol. Lett.
, vol.186
, pp. 197-201
-
-
Carrick, C.S.1
Fyfe, J.A.2
Davies, J.K.3
-
15
-
-
0035407383
-
Development of a genetic system for Geobacter sulfurreducens
-
Coppi M.V., Leang C., Sandler S.J., Lovley D.R. Development of a genetic system for Geobacter sulfurreducens. Appl. Environ. Microbiol. 2001, 67:3180-3187.
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 3180-3187
-
-
Coppi, M.V.1
Leang, C.2
Sandler, S.J.3
Lovley, D.R.4
-
17
-
-
33746072949
-
The proteome of dissimilatory metal-reducing microorganism Geobacter sulfurreducens under various growth conditions
-
Ding Y.H., et al. The proteome of dissimilatory metal-reducing microorganism Geobacter sulfurreducens under various growth conditions. Biochim. Biophys. Acta 2006, 1764:1198-1206.
-
(2006)
Biochim. Biophys. Acta
, vol.1764
, pp. 1198-1206
-
-
Ding, Y.H.1
-
18
-
-
4344704870
-
Genetic regulation of biological nitrogen fixation
-
Dixon R., Kahn D. Genetic regulation of biological nitrogen fixation. Nat. Rev. Microbiol. 2004, 2:621-631.
-
(2004)
Nat. Rev. Microbiol.
, vol.2
, pp. 621-631
-
-
Dixon, R.1
Kahn, D.2
-
19
-
-
34447508305
-
Two ABC transporter operons and the antimicrobial resistance gene mtrF are pilT responsive in Neisseria gonorrhoeae
-
Friedrich A., Arvidson C.G., Shafer W.M., Lee E.H., So M. Two ABC transporter operons and the antimicrobial resistance gene mtrF are pilT responsive in Neisseria gonorrhoeae. J. Bacteriol. 2007, 189:5399-5402.
-
(2007)
J. Bacteriol.
, vol.189
, pp. 5399-5402
-
-
Friedrich, A.1
Arvidson, C.G.2
Shafer, W.M.3
Lee, E.H.4
So, M.5
-
21
-
-
27744521813
-
Remediation and recovery of uranium from contaminated subsurface environments with electrodes
-
Gregory K.B., Lovley D.R. Remediation and recovery of uranium from contaminated subsurface environments with electrodes. Environ. Sci. Technol. 2005, 39:8943-8947.
-
(2005)
Environ. Sci. Technol.
, vol.39
, pp. 8943-8947
-
-
Gregory, K.B.1
Lovley, D.R.2
-
22
-
-
2642520659
-
Graphite electrodes as electron donors for anaerobic respiration
-
Gregory K.B., Bond D.R., Lovley D.R. Graphite electrodes as electron donors for anaerobic respiration. Environ. Microbiol. 2004, 6:596-604.
-
(2004)
Environ. Microbiol.
, vol.6
, pp. 596-604
-
-
Gregory, K.B.1
Bond, D.R.2
Lovley, D.R.3
-
23
-
-
0030690923
-
Transcriptional regulation of type 4 pilin genes and the site-specific recombinase gene, piv, in Moraxella lacunata and Moraxella bovis
-
Heinrich D.W., Glasgow A.C. Transcriptional regulation of type 4 pilin genes and the site-specific recombinase gene, piv, in Moraxella lacunata and Moraxella bovis. J. Bacteriol. 1997, 179:7298-7305.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 7298-7305
-
-
Heinrich, D.W.1
Glasgow, A.C.2
-
24
-
-
0027419713
-
PilS and PilR, a two-component transcriptional regulatory system controlling expression of type 4 fimbriae in Pseudomonas aeruginosa
-
Hobbs M., Collie E.S., Free P.D., Livingston S.P., Mattick J.S. PilS and PilR, a two-component transcriptional regulatory system controlling expression of type 4 fimbriae in Pseudomonas aeruginosa. Mol. Microbiol. 1993, 7:669-682.
-
(1993)
Mol. Microbiol.
, vol.7
, pp. 669-682
-
-
Hobbs, M.1
Collie, E.S.2
Free, P.D.3
Livingston, S.P.4
Mattick, J.S.5
-
25
-
-
0036249528
-
Enrichment of members of the family Geobacteraceae associated with stimulation of dissimilatory metal reduction in uranium-contaminated aquifer sediments
-
Holmes D.E., Finneran K.T., O'Neil R.A., Lovley D.R. Enrichment of members of the family Geobacteraceae associated with stimulation of dissimilatory metal reduction in uranium-contaminated aquifer sediments. Appl. Environ. Microbiol. 2002, 68:2300-2306.
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 2300-2306
-
-
Holmes, D.E.1
Finneran, K.T.2
O'Neil, R.A.3
Lovley, D.R.4
-
26
-
-
0342561247
-
Formation of pilin in Pseudomonas aeruginosa requires the alternative sigma factor (RpoN) of RNA polymerase
-
Ishimoto K.S., Lory S. Formation of pilin in Pseudomonas aeruginosa requires the alternative sigma factor (RpoN) of RNA polymerase. Proc. Natl Acad. Sci. USA 1989, 86:1954-1957.
-
(1989)
Proc. Natl Acad. Sci. USA
, vol.86
, pp. 1954-1957
-
-
Ishimoto, K.S.1
Lory, S.2
-
27
-
-
0026770370
-
Identification of pilR, which encodes a transcriptional activator of the Pseudomonas aeruginosa pilin gene
-
Ishimoto K.S., Lory S. Identification of pilR, which encodes a transcriptional activator of the Pseudomonas aeruginosa pilin gene. J. Bacteriol. 1992, 174:3514-3521.
-
(1992)
J. Bacteriol.
, vol.174
, pp. 3514-3521
-
-
Ishimoto, K.S.1
Lory, S.2
-
28
-
-
0027943453
-
PilR, a transcriptional regulator of piliation in Pseudomonas aeruginosa, binds to a cis-acting sequence upstream of the pilin gene promoter
-
Jin S., Ishimoto K.S., Lory S. PilR, a transcriptional regulator of piliation in Pseudomonas aeruginosa, binds to a cis-acting sequence upstream of the pilin gene promoter. Mol. Microbiol. 1994, 14:1049-1057.
-
(1994)
Mol. Microbiol.
, vol.14
, pp. 1049-1057
-
-
Jin, S.1
Ishimoto, K.S.2
Lory, S.3
-
29
-
-
33645065849
-
Type II secretion: from structure to function
-
Johnson T.L., Abendroth J., Hol W.G., Sandkvist M. Type II secretion: from structure to function. FEMS Microbiol. Lett. 2006, 255:175-186.
-
(2006)
FEMS Microbiol. Lett.
, vol.255
, pp. 175-186
-
-
Johnson, T.L.1
Abendroth, J.2
Hol, W.G.3
Sandkvist, M.4
-
30
-
-
60149083685
-
PilR, a transcriptional regulator for pilin and other genes required for Fe(III) reduction in Geobacter sulfurreducens
-
Juárez K., et al. PilR, a transcriptional regulator for pilin and other genes required for Fe(III) reduction in Geobacter sulfurreducens. J. Mol. Microbiol. Biotechnol. 2009, 16:146-158.
-
(2009)
J. Mol. Microbiol. Biotechnol.
, vol.16
, pp. 146-158
-
-
Juárez, K.1
-
31
-
-
77957872141
-
-
In preparation. Genome-wide identification of transcription start sites using two highthroughput methodologies in Geobacter sulfurreducens.
-
Juárez, K., Mendoza-Vargas, A., Olvera, L., Olvera, M., Grande, R., Vega-Alvarado, L., Taboada, B., Jimenez-Jacinto, V., Salgado, H., Contreras-Moreira, B., Huerta, A.M., Collado-Vides, J., Morett, E., Lovley, D., in preparation. Genome-wide identification of transcription start sites using two highthroughput methodologies in Geobacter sulfurreducens.
-
-
-
Juárez, K.1
Mendoza-Vargas, A.2
Olvera, L.3
Olvera, M.4
Grande, R.5
Vega-Alvarado, L.6
Taboada, B.7
Jimenez-Jacinto, V.8
Salgado, H.9
Contreras-Moreira, B.10
Huerta, A.M.11
Collado-Vides, J.12
Morett, E.13
Lovley, D.14
-
32
-
-
45949107473
-
Recent developments in the MAFFT multiple sequence alignment program
-
Katoh K., Toh H. Recent developments in the MAFFT multiple sequence alignment program. Brief. Bioinform. 2008, 9:286-298.
-
(2008)
Brief. Bioinform.
, vol.9
, pp. 286-298
-
-
Katoh, K.1
Toh, H.2
-
33
-
-
67749127365
-
54, PilS, and PilR
-
54, PilS, and PilR. J. Bacteriol. 2009, 191:4976-4986.
-
(2009)
J. Bacteriol.
, vol.191
, pp. 4976-4986
-
-
Kehl-Fie, T.E.1
Porsch, E.A.2
Miller, S.E.3
St Geme, J.W.4
-
34
-
-
44649109502
-
Insights into genes involved in electricity generation in Geobacter sulfurreducens via whole genome microarray analysis of the OmcF-deficient mutant
-
Kim B.C., Postier B.L., Didonato R.J., Chaudhuri S.K., Nevin K.P., Lovley D.R. Insights into genes involved in electricity generation in Geobacter sulfurreducens via whole genome microarray analysis of the OmcF-deficient mutant. Bioelectrochemistry 2008, 73:70-75.
-
(2008)
Bioelectrochemistry
, vol.73
, pp. 70-75
-
-
Kim, B.C.1
Postier, B.L.2
Didonato, R.J.3
Chaudhuri, S.K.4
Nevin, K.P.5
Lovley, D.R.6
-
35
-
-
0032536405
-
The pathogenic neisseriae contain an inactive rpoN gene and do not utilize the pilE sigma54 promoter
-
Laskos L., Dillard J.P., Seifert H.S., Fyfe J.A., Davies J.K. The pathogenic neisseriae contain an inactive rpoN gene and do not utilize the pilE sigma54 promoter. Gene 1998, 208:95-102.
-
(1998)
Gene
, vol.208
, pp. 95-102
-
-
Laskos, L.1
Dillard, J.P.2
Seifert, H.S.3
Fyfe, J.A.4
Davies, J.K.5
-
36
-
-
21144442508
-
Differential transcriptional regulation and function of two highly similar genes, omcB and omcC, in a 10-kb chromosomal duplication in Geobacter sulfurreducens
-
Leang C., Lovley D. Differential transcriptional regulation and function of two highly similar genes, omcB and omcC, in a 10-kb chromosomal duplication in Geobacter sulfurreducens. Microbiology 2005, 151:1761-1767.
-
(2005)
Microbiology
, vol.151
, pp. 1761-1767
-
-
Leang, C.1
Lovley, D.2
-
37
-
-
68849107920
-
Genome-wide analysis of the RpoN regulon in Geobacter sulfurreducens
-
Leang C., et al. Genome-wide analysis of the RpoN regulon in Geobacter sulfurreducens. BMC Genomics 2009, 10:331.
-
(2009)
BMC Genomics
, vol.10
, pp. 331
-
-
Leang, C.1
-
38
-
-
33745225414
-
Bug juice: harvesting electricity with microorganisms
-
Lovley D.R. Bug juice: harvesting electricity with microorganisms. Nat. Rev. Microbiol. 2006, 4:497-508.
-
(2006)
Nat. Rev. Microbiol.
, vol.4
, pp. 497-508
-
-
Lovley, D.R.1
-
39
-
-
57049119571
-
The microbe electric: conversion of organic matter to electricity
-
Lovley D.R. The microbe electric: conversion of organic matter to electricity. Curr. Opin. Biotechnol. 2008, 19:564-571.
-
(2008)
Curr. Opin. Biotechnol.
, vol.19
, pp. 564-571
-
-
Lovley, D.R.1
-
40
-
-
0029790133
-
Humic substances as electron acceptors for microbial respiration
-
Lovley D.R., Coates J.D., Blunt-Harris E.L., Phillips E.J.P., Woodward J.C. Humic substances as electron acceptors for microbial respiration. Nature 1996, 382:445-447.
-
(1996)
Nature
, vol.382
, pp. 445-447
-
-
Lovley, D.R.1
Coates, J.D.2
Blunt-Harris, E.L.3
Phillips, E.J.P.4
Woodward, J.C.5
-
42
-
-
0026512864
-
Phosphorylation of bacterial response regulator proteins by low molecular weight phospho-donors
-
Lukat G.S., McCleary W.R., Stock A.M., Stock J.B. Phosphorylation of bacterial response regulator proteins by low molecular weight phospho-donors. Proc. Natl Acad. Sci. USA 1992, 89:718-722.
-
(1992)
Proc. Natl Acad. Sci. USA
, vol.89
, pp. 718-722
-
-
Lukat, G.S.1
McCleary, W.R.2
Stock, A.M.3
Stock, J.B.4
-
43
-
-
0031931507
-
Phosphorylation-independent activity of the response regulators AlgB and AlgR in promoting alginate biosynthesis in mucoid Pseudomonas aeruginosa
-
Ma S., Selvaraj U., Ohman D.E., Quarless R., Hassett D.J., Wozniak D.J. Phosphorylation-independent activity of the response regulators AlgB and AlgR in promoting alginate biosynthesis in mucoid Pseudomonas aeruginosa. J. Bacteriol. 1998, 180:956-968.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 956-968
-
-
Ma, S.1
Selvaraj, U.2
Ohman, D.E.3
Quarless, R.4
Hassett, D.J.5
Wozniak, D.J.6
-
44
-
-
1642500165
-
The NifL-NifA system: a multidomain transcriptional regulatory complex that integrates environmental signals
-
Martinez-Argudo I., Little R., Shearer N., Johnson P., Dixon R. The NifL-NifA system: a multidomain transcriptional regulatory complex that integrates environmental signals. J. Bacteriol. 2004, 186:601-610.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 601-610
-
-
Martinez-Argudo, I.1
Little, R.2
Shearer, N.3
Johnson, P.4
Dixon, R.5
-
45
-
-
0036405357
-
Type IV pili and twitching motility
-
Mattick J.S. Type IV pili and twitching motility. Annu. Rev. Microbiol. 2002, 56:289-314.
-
(2002)
Annu. Rev. Microbiol.
, vol.56
, pp. 289-314
-
-
Mattick, J.S.1
-
46
-
-
33747119626
-
A putative multicopper protein secreted by an atypical type II secretion system involved in the reduction of insoluble electron acceptors in Geobacter sulfurreducens
-
Mehta T., Childers S.E., Glaven R., Lovley D.R., Mester T. A putative multicopper protein secreted by an atypical type II secretion system involved in the reduction of insoluble electron acceptors in Geobacter sulfurreducens. Microbiology 2006, 152:2257-2264.
-
(2006)
Microbiology
, vol.152
, pp. 2257-2264
-
-
Mehta, T.1
Childers, S.E.2
Glaven, R.3
Lovley, D.R.4
Mester, T.5
-
47
-
-
70449380939
-
Genome-wide identification of transcription start sites, promoters and transcription factor binding sites in E. coli
-
Mendoza-Vargas A., et al. Genome-wide identification of transcription start sites, promoters and transcription factor binding sites in E. coli. PLoS ONE 2009, 4:e7526.
-
(2009)
PLoS ONE
, vol.4
-
-
Mendoza-Vargas, A.1
-
48
-
-
0346243803
-
The genome of Geobacter sulfurreducens: insights into metal reduction in subsurface environments
-
Methé B.A., et al. The genome of Geobacter sulfurreducens: insights into metal reduction in subsurface environments. Science 2003, 302:1967-1969.
-
(2003)
Science
, vol.302
, pp. 1967-1969
-
-
Methé, B.A.1
-
49
-
-
0027340543
-
54 bacterial enhancer-binding protein family: mechanism of action and phylogenetic relationship of their functional domains
-
54 bacterial enhancer-binding protein family: mechanism of action and phylogenetic relationship of their functional domains. J. Bacteriol. 1993, 175:6067-6074.
-
(1993)
J. Bacteriol.
, vol.175
, pp. 6067-6074
-
-
Morett, E.1
Segovia, L.2
-
50
-
-
33845351083
-
Pattern locator: a new tool for finding local sequence patterns in genomic DNA sequences
-
Mrázek J., Xie S. Pattern locator: a new tool for finding local sequence patterns in genomic DNA sequences. Bioinformatics 2006, 22:3099-3100.
-
(2006)
Bioinformatics
, vol.22
, pp. 3099-3100
-
-
Mrázek, J.1
Xie, S.2
-
51
-
-
0036796553
-
Frequent oligonucleotide motifs in genomes of three streptococci
-
Mrázek J., Gaynon L.H., Karlin S. Frequent oligonucleotide motifs in genomes of three streptococci. Nucleic Acids Res. 2002, 30:4216-4221.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 4216-4221
-
-
Mrázek, J.1
Gaynon, L.H.2
Karlin, S.3
-
52
-
-
66249098568
-
Anode biofilm transcriptomics reveals outer surface components essential for high density current production in Geobacter sulfurreducens fuel cells
-
Nevin K.P., et al. Anode biofilm transcriptomics reveals outer surface components essential for high density current production in Geobacter sulfurreducens fuel cells. PLoS ONE 2009, 4:e5628.
-
(2009)
PLoS ONE
, vol.4
-
-
Nevin, K.P.1
-
53
-
-
3843061164
-
The RpoS sigma factor in the dissimilatory Fe(III)-reducing bacterium Geobacter sulfurreducens
-
Núñez C., Adams L., Childers S., Lovley D.R. The RpoS sigma factor in the dissimilatory Fe(III)-reducing bacterium Geobacter sulfurreducens. J. Bacteriol. 2004, 186:5543-5546.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 5543-5546
-
-
Núñez, C.1
Adams, L.2
Childers, S.3
Lovley, D.R.4
-
54
-
-
2442638056
-
Vanadium respiration by Geobacter metallireducens: novel strategy for in situ removal of vanadium from groundwater
-
Ortiz-Bernad I., Anderson R.T., Vrionis H.A., Lovley D.R. Vanadium respiration by Geobacter metallireducens: novel strategy for in situ removal of vanadium from groundwater. Appl. Environ. Microbiol. 2004, 70:3091-3095.
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 3091-3095
-
-
Ortiz-Bernad, I.1
Anderson, R.T.2
Vrionis, H.A.3
Lovley, D.R.4
-
55
-
-
33745463532
-
Regulation of type IV fimbrial biogenesis in Dichelobacter nodosus
-
Parker D., Kennan R.M., Myers G.S., Paulsen I.T., Songer J.G., Rood J.I. Regulation of type IV fimbrial biogenesis in Dichelobacter nodosus. J. Bacteriol. 2006, 188:4801-4811.
-
(2006)
J. Bacteriol.
, vol.188
, pp. 4801-4811
-
-
Parker, D.1
Kennan, R.M.2
Myers, G.S.3
Paulsen, I.T.4
Songer, J.G.5
Rood, J.I.6
-
56
-
-
0023808863
-
Two unusual pilin sequences from different isolates of Pseudomonas aeruginosa
-
Pasloske B.L., Sastry P.A., Finlay B.B., Paranchych W. Two unusual pilin sequences from different isolates of Pseudomonas aeruginosa. J. Bacteriol. 1988, 170:3738-3741.
-
(1988)
J. Bacteriol.
, vol.170
, pp. 3738-3741
-
-
Pasloske, B.L.1
Sastry, P.A.2
Finlay, B.B.3
Paranchych, W.4
-
57
-
-
0024431437
-
The activity of the Pseudomonas aeruginosa pilin promoter is enhanced by an upstream regulatory site
-
Pasloske B.L., Drummond D.S., Frost L.S., Paranchych W. The activity of the Pseudomonas aeruginosa pilin promoter is enhanced by an upstream regulatory site. Gene 1989, 81:25-34.
-
(1989)
Gene
, vol.81
, pp. 25-34
-
-
Pasloske, B.L.1
Drummond, D.S.2
Frost, L.S.3
Paranchych, W.4
-
58
-
-
16644364007
-
In silico representation and discovery of transcription factor binding sites
-
Pavesi G., Mauri G., Pesole G. In silico representation and discovery of transcription factor binding sites. Brief. Bioinform. 2004, 5:217-236.
-
(2004)
Brief. Bioinform.
, vol.5
, pp. 217-236
-
-
Pavesi, G.1
Mauri, G.2
Pesole, G.3
-
59
-
-
77956281182
-
Structural and operational complexity of the Geobacter sulfurreducens genome
-
Qiu Y., Cho B.-K., Park Y.S., Lovley D., Palsson B.Ø., Zengler K. Structural and operational complexity of the Geobacter sulfurreducens genome. Genome Res. 2010, 10.1101/gr.107540.110.
-
(2010)
Genome Res.
-
-
Qiu, Y.1
Cho, B.-K.2
Park, Y.S.3
Lovley, D.4
Palsson, B.Ø.5
Zengler, K.6
-
60
-
-
70349678388
-
GSEL v. 2, a genome-wide query system of operon organization and regulatory sequence elements of Geobacter sulfurreducens
-
Qu Y., et al. GSEL v. 2, a genome-wide query system of operon organization and regulatory sequence elements of Geobacter sulfurreducens. OMICS 2009, 413:439-449.
-
(2009)
OMICS
, vol.413
, pp. 439-449
-
-
Qu, Y.1
-
62
-
-
21344461500
-
Extracellular electron transfer via microbial nanowires
-
Reguera G., McCarthy K.D., Mehta T., Nicoll J.S., Tuominen M.T., Lovley D.R. Extracellular electron transfer via microbial nanowires. Nature 2005, 435:1098-1101.
-
(2005)
Nature
, vol.435
, pp. 1098-1101
-
-
Reguera, G.1
McCarthy, K.D.2
Mehta, T.3
Nicoll, J.S.4
Tuominen, M.T.5
Lovley, D.R.6
-
63
-
-
33751014053
-
Biofilm and nanowire production leads to increased current in Geobacter sulfurreducens fuel cells
-
Reguera G., Nevin K.P., Nicoll J.S., Covalla S.F., Woodard T.L., Lovley D.R. Biofilm and nanowire production leads to increased current in Geobacter sulfurreducens fuel cells. Appl. Environ. Microbiol. 2006, 72:7345-7348.
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 7345-7348
-
-
Reguera, G.1
Nevin, K.P.2
Nicoll, J.S.3
Covalla, S.F.4
Woodard, T.L.5
Lovley, D.R.6
-
64
-
-
33947400655
-
Possible nonconductive role of Geobacter sulfurreducens pilus nanowires in biofilm formation
-
Reguera G., Pollina R.B., Nicoll J.S., Lovley D.R. Possible nonconductive role of Geobacter sulfurreducens pilus nanowires in biofilm formation. J. Bacteriol. 2007, 189:2125-2127.
-
(2007)
J. Bacteriol.
, vol.189
, pp. 2125-2127
-
-
Reguera, G.1
Pollina, R.B.2
Nicoll, J.S.3
Lovley, D.R.4
-
65
-
-
0034125366
-
Probabilistic and statistical properties of words: an overview
-
Reinert G., Schbath S., Waterman M.S. Probabilistic and statistical properties of words: an overview. J. Comput. Biol. 2000, 7:1-46.
-
(2000)
J. Comput. Biol.
, vol.7
, pp. 1-46
-
-
Reinert, G.1
Schbath, S.2
Waterman, M.S.3
-
66
-
-
0034786443
-
Numerical comparison of several approximations of the word count distribution in random sequences
-
Robin S., Schbath S. Numerical comparison of several approximations of the word count distribution in random sequences. J. Comput. Biol. 2001, 8:349-359.
-
(2001)
J. Comput. Biol.
, vol.8
, pp. 349-359
-
-
Robin, S.1
Schbath, S.2
-
67
-
-
0035491310
-
Relationships between microbial community structure and hydrochemistry in a landfill leachate-polluted aquifer
-
Roling W.F., van Breukelen B.M., Braster M., Lin B., van Verseveld H.W. Relationships between microbial community structure and hydrochemistry in a landfill leachate-polluted aquifer. Appl. Environ. Microbiol. 2001, 67:4619-4629.
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 4619-4629
-
-
Roling, W.F.1
van Breukelen, B.M.2
Braster, M.3
Lin, B.4
van Verseveld, H.W.5
-
68
-
-
0032976385
-
Microbial communities associated with anaerobic benzene degradation in a petroleum-contaminated aquifer
-
Rooney-Varga J.N., Anderson R.T., Fraga J.L., Ringelberg D., Lovley D.R. Microbial communities associated with anaerobic benzene degradation in a petroleum-contaminated aquifer. Appl. Environ. Microbiol. 1999, 65:3056-3063.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 3056-3063
-
-
Rooney-Varga, J.N.1
Anderson, R.T.2
Fraga, J.L.3
Ringelberg, D.4
Lovley, D.R.5
-
69
-
-
0034048881
-
An overview on the distribution of word counts in Markov chains
-
Schbath S. An overview on the distribution of word counts in Markov chains. J. Comput. Biol. 2000, 7:193-201.
-
(2000)
J. Comput. Biol.
, vol.7
, pp. 193-201
-
-
Schbath, S.1
-
70
-
-
0032953634
-
PhhB, a Pseudomonas aeruginosa homolog of mammalian pterin 4a-carbinolamine dehydratase/DCoH, does not regulate expression of phenylalanine hydroxylase at the transcriptional level
-
Song J., Xia T., Jensen R.A. PhhB, a Pseudomonas aeruginosa homolog of mammalian pterin 4a-carbinolamine dehydratase/DCoH, does not regulate expression of phenylalanine hydroxylase at the transcriptional level. J. Bacteriol. 1999, 181:2789-2796.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 2789-2796
-
-
Song, J.1
Xia, T.2
Jensen, R.A.3
-
71
-
-
51649127655
-
Graphite electrode as a sole electron donor for reductive dechlorination of tetrachlorethene by Geobacter lovleyi
-
Strycharz S.M., et al. Graphite electrode as a sole electron donor for reductive dechlorination of tetrachlorethene by Geobacter lovleyi. Appl. Environ. Microbiol. 2008, 74:5943-5947.
-
(2008)
Appl. Environ. Microbiol.
, vol.74
, pp. 5943-5947
-
-
Strycharz, S.M.1
-
72
-
-
0037332383
-
54-dependent transcriptional activators
-
54-dependent transcriptional activators. J. Bacteriol. 2003, 185:1757-1767.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 1757-1767
-
-
Studholme, D.J.1
Dixon, R.2
-
73
-
-
0034532787
-
N-dependent promoters in bacterial genomes
-
N-dependent promoters in bacterial genomes. Microbiology 2000, 146(Pt 12):3021-3023.
-
(2000)
Microbiology
, vol.146
, Issue.PART. 12
, pp. 3021-3023
-
-
Studholme, D.J.1
Buck, M.2
Nixon, T.3
-
74
-
-
0042902833
-
The COG database: an updated version includes eukaryotes
-
Tatusov R., et al. The COG database: an updated version includes eukaryotes. BMC Bioinform. 2003, 4:41.
-
(2003)
BMC Bioinform.
, vol.4
, pp. 41
-
-
Tatusov, R.1
-
75
-
-
55349091732
-
Comparative genomics of Geobacter chemotaxis genes reveals diverse signaling function
-
Tran H.T., Krushkal J., Antommattei F.M., Lovley D.R., Weis R.M. Comparative genomics of Geobacter chemotaxis genes reveals diverse signaling function. BMC Genomics 2008, 9:471.
-
(2008)
BMC Genomics
, vol.9
, pp. 471
-
-
Tran, H.T.1
Krushkal, J.2
Antommattei, F.M.3
Lovley, D.R.4
Weis, R.M.5
-
76
-
-
0024505662
-
Localization of the control region for expression of exotoxin A in Pseudomonas aeruginosa
-
Tsaur M.L., Clowes R.C. Localization of the control region for expression of exotoxin A in Pseudomonas aeruginosa. J. Bacteriol. 1989, 171:2599-2604.
-
(1989)
J. Bacteriol.
, vol.171
, pp. 2599-2604
-
-
Tsaur, M.L.1
Clowes, R.C.2
-
77
-
-
51549089947
-
Heat-shock sigma factor RpoH from Geobacter sulfurreducens
-
Ueki T., Lovley D.R. Heat-shock sigma factor RpoH from Geobacter sulfurreducens. Microbiology 2007, 384:73-95.
-
(2007)
Microbiology
, vol.384
, pp. 73-95
-
-
Ueki, T.1
Lovley, D.R.2
-
78
-
-
0030803595
-
Nucleoprotein complex formation by the enhancer binding protein nifA
-
Wang X.Y., Kolb A., Cannon W., Buck M. Nucleoprotein complex formation by the enhancer binding protein nifA. Nucleic Acids Res. 1997, 25:3478-3485.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3478-3485
-
-
Wang, X.Y.1
Kolb, A.2
Cannon, W.3
Buck, M.4
-
79
-
-
25644460030
-
Finding approximate tandem repeats in genomic sequences
-
Wexler Y., Yakhini Z., Kashi Y., Geiger D. Finding approximate tandem repeats in genomic sequences. J. Comput. Biol. 2005, 12:928-942.
-
(2005)
J. Comput. Biol.
, vol.12
, pp. 928-942
-
-
Wexler, Y.1
Yakhini, Z.2
Kashi, Y.3
Geiger, D.4
-
80
-
-
41749093397
-
54 promoter-specificity factor
-
54 promoter-specificity factor. Mol. Microbiol. 2008, 68:538-546.
-
(2008)
Mol. Microbiol.
, vol.68
, pp. 538-546
-
-
Wigneshweraraj, S.1
-
81
-
-
15644383107
-
Regulation of expression of the pilA gene in Myxococcus xanthus
-
Wu S.S., Kaiser D. Regulation of expression of the pilA gene in Myxococcus xanthus. J. Bacteriol. 1997, 179:7748-7758.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 7748-7758
-
-
Wu, S.S.1
Kaiser, D.2
-
82
-
-
0035066617
-
Transcriptional regulation at a distance in bacteria
-
Xu H., Hoover T.R. Transcriptional regulation at a distance in bacteria. Curr. Opin. Microbiol. 2001, 4:138-144.
-
(2001)
Curr. Opin. Microbiol.
, vol.4
, pp. 138-144
-
-
Xu, H.1
Hoover, T.R.2
-
83
-
-
33750957661
-
Computational prediction of RpoS and RpoD regulatory sites in Geobacter sulfurreducens using sequence and gene expression information
-
Yan B., et al. Computational prediction of RpoS and RpoD regulatory sites in Geobacter sulfurreducens using sequence and gene expression information. Gene 2006, 384:73-95.
-
(2006)
Gene
, vol.384
, pp. 73-95
-
-
Yan, B.1
-
84
-
-
34548415488
-
Genome-wide similarity search for transcription factors and their binding sites in a metal-reducing prokaryote Geobacter sulfurreducens
-
Yan B., Lovley D.R., Krushkal J. Genome-wide similarity search for transcription factors and their binding sites in a metal-reducing prokaryote Geobacter sulfurreducens. Biosystems 2007, 90:421-441.
-
(2007)
Biosystems
, vol.90
, pp. 421-441
-
-
Yan, B.1
Lovley, D.R.2
Krushkal, J.3
-
85
-
-
1642356028
-
PilR enhances the sensitivity of Xanthomonas axonopodis pv. citri to the infection of filamentous bacteriophage Cf
-
Yang Y.C., Chou C.P., Kuo T.T., Lin S.H., Yang M.K. PilR enhances the sensitivity of Xanthomonas axonopodis pv. citri to the infection of filamentous bacteriophage Cf. Curr. Microbiol. 2004, 48:251-261.
-
(2004)
Curr. Microbiol.
, vol.48
, pp. 251-261
-
-
Yang, Y.C.1
Chou, C.P.2
Kuo, T.T.3
Lin, S.H.4
Yang, M.K.5
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