-
1
-
-
23144463910
-
RibEx: A web server for locating riboswitches and other conserved bacterial regulatory elements
-
Available at:
-
Abreu-Goodger, C., Merino, E. (2005). RibEx: a web server for locating riboswitches and other conserved bacterial regulatory elements. Nucleic Acids Research 33, W690-692. Available at: http:==www.ibt.unam.mx=biocomputo=ribex. html
-
(2005)
Nucleic Acids Research
, vol.33
-
-
Abreu-Goodger, C.1
Merino, E.2
-
2
-
-
10744231694
-
Stimulating the in situ activity of Geobacter species to remove uranium from the groundwater of a uranium-contaminated aquifer
-
Anderson, R.T., Vrionis, H.A., Ortiz-Bernad, I., Resch, C.T., Long, P.E., Dayvault, R., et al. (2003). Stimulating the in situ activity of Geobacter species to remove uranium from the groundwater of a uranium-contaminated aquifer. Appl Environ Microbiol 69, 5884-5891
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 5884-5891
-
-
Anderson, R.T.1
Vrionis, H.A.2
Ortiz-Bernad, I.3
Resch, C.T.4
Long, P.E.5
Dayvault, R.6
-
3
-
-
68149161129
-
Integrated analysis and reconstruction of microbial transcriptional gene regulatory networks using CoryneRegNet
-
Available at:
-
Baumbach, J., Wittkop, T., Kleindt, C.K., and Tauch, A. (2009). Integrated analysis and reconstruction of microbial transcriptional gene regulatory networks using CoryneRegNet. Nat Protoc 4, 992-1005. Available at: http:==coryneregnet.cebitec .uni-bielefeld.de
-
(2009)
Nat Protoc
, vol.4
, pp. 992-1005
-
-
Baumbach, J.1
Wittkop, T.2
Kleindt, C.K.3
Tauch, A.4
-
4
-
-
0037127004
-
Electrode-reducing microorganisms that harvest energy from marine sediments
-
Bond, D.R., Holmes, D.E., Tender, L.M., and Lovley, D.R. (2002). Electrode-reducing microorganisms that harvest energy from marine sediments. Science 295, 483-485
-
(2002)
Science
, vol.295
, pp. 483-485
-
-
Bond, D.R.1
Holmes, D.E.2
Tender, L.M.3
Lovley, D.R.4
-
6
-
-
33845433741
-
Role of RelGsu in stress response and Fe(III) reduction in Geobacter sulfurreducens
-
DiDonato, L.N., Sullivan, S.A., Nevin, K., Methé, B.A., England, R., Lovley, D.R. (2006). Role of RelGsu in stress response and Fe(III) reduction in Geobacter sulfurreducens. J Bacteriol 24, 8469-8478
-
(2006)
J Bacteriol
, vol.24
, pp. 8469-8478
-
-
Didonato, L.N.1
Sullivan, S.A.2
Nevin, K.3
Methé, B.A.4
England, R.5
Lovley, D.R.6
-
7
-
-
38549140094
-
RegulonDB (version 6.0): Gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation
-
Gama-Castro, S., Jiménez-Jacinto, V., Peralta-Gil, M., Santos- Zavaleta, A., Peñ aloza-Spinola, M.I., Contreras-Moreira, B., et al. (2008). RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation. Nucleic Acids Res 36, D120-D124
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Gama-Castro, S.1
Jiménez-Jacinto, V.2
Peralta-Gil, M.3
Santos- Zavaleta, A.4
Peñ Aloza-Spinola, M.I.5
Contreras-Moreira, B.6
-
8
-
-
0028624664
-
Bending and curvature calculations in B-DNA
-
Goodsell, D.S., and Dickerson, R.E. (1994). Bending and curvature calculations in B-DNA. Nucleic Acids Research 22, 5497-5503
-
(1994)
Nucleic Acids Research
, vol.22
, pp. 5497-5503
-
-
Goodsell, D.S.1
Dickerson, R.E.2
-
9
-
-
13444252847
-
Rfam: Annotating non-coding RNAs in complete genomes
-
Available at:
-
Griffiths-Jones, S., Moxon, S., Marshall, M., Khanna, A., Eddy, S.R., Bateman, A. (2005). Rfam: annotating non-coding RNAs in complete genomes. Nucleic Acids Research 33, D121-D124. Available at: http:==www.sanger.ac.uk= Software=Rfam=
-
(2005)
Nucleic Acids Research
, vol.33
-
-
Griffiths-Jones, S.1
Moxon, S.2
Marshall, M.3
Khanna, A.4
Eddy, S.R.5
Bateman, A.6
-
10
-
-
58149193249
-
PRODORIC (release 2009): A database and tool platform for the analysis of gene regulation in prokaryotes
-
Available at:
-
Grote, A., Klein, J., Retter, I., Haddad, I., Behling, S., Bunk, B., et al. (2009). PRODORIC (release 2009): a database and tool platform for the analysis of gene regulation in prokaryotes. Nucleic Acids Res. 37, D61-D65. Available at: http:==www .prodoric.de
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Grote, A.1
Klein, J.2
Retter, I.3
Haddad, I.4
Behling, S.5
Bunk, B.6
-
11
-
-
0036249528
-
Enrichment of members of the family Geobacteraceae associated with stimulation of dissimilatory metal reduction in uranium-contaminated aquifer sediments
-
Holmes, D.E., Finneran, K.T., O'Neil, R.A., and Lovley, D.R. (2002). Enrichment of members of the family Geobacteraceae associated with stimulation of dissimilatory metal reduction in uranium-contaminated aquifer sediments. Appl Environ Microbiol 68, 2300-2306
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 2300-2306
-
-
Holmes, D.E.1
Finneran, K.T.2
O'Neil, R.A.3
Lovley, D.R.4
-
12
-
-
0345269755
-
Geobacter sulfurreducens has two autoregulated lexA genes whose products do not bind the recA promoter: Differing responses of lexA and recA to DNA damage
-
Jara, M., Núñ ez, C., Campoy, S., Fernandez de Henestrosa, A.R., Lovley, D.R., and Barbé, J. (2003). Geobacter sulfurreducens has two autoregulated lexA genes whose products do not bind the recA promoter: differing responses of lexA and recA to DNA damage. J Bacteriol 185, 2493-2502
-
(2003)
J Bacteriol
, vol.185
, pp. 2493-2502
-
-
Jara, M.1
Núñez, C.2
Campoy, S.3
Fernandez De Henestrosa, A.R.4
Lovley, D.R.5
Barbé, J.6
-
13
-
-
3242877502
-
BioOptimizer: A Bayesian scoring function approach to motif discovery
-
Jensen, S.T., and Liu, J.S. (2004). BioOptimizer: a Bayesian scoring function approach to motif discovery. Bioinformatics 20, 1557-1564
-
(2004)
Bioinformatics
, vol.20
, pp. 1557-1564
-
-
Jensen, S.T.1
Liu, J.S.2
-
14
-
-
60149083685
-
PilR, a transcriptional regulator for pilin and other genes required for Fe(III) reduction in Geobacter sulfurreducens
-
Juárez, K., Kim, B.C., Nevin, K., Olvera, L., Reguera, G., Lovley, D.R., et al. (2009). PilR, a transcriptional regulator for pilin and other genes required for Fe(III) reduction in Geobacter sulfurreducens. J Mol Microbiol Biotechnol 16, 146-158
-
(2009)
J Mol Microbiol Biotechnol
, vol.16
, pp. 146-158
-
-
Juárez, K.1
Kim, B.C.2
Nevin, K.3
Olvera, L.4
Reguera, G.5
Lovley, D.R.6
-
15
-
-
33846107772
-
RegTransBase-a database of regulatory sequences and interactions in a wide range of prokaryotic genomes
-
Kazakov, A.E., Cipriano, M.J., Novichkov, P.S., Minovitsky, S., Vinogradov, D.V., Arkin, A., et al. (2007). RegTransBase-a database of regulatory sequences and interactions in a wide range of prokaryotic genomes. Nucleic Acids Res 35, D407-D412
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Kazakov, A.E.1
Cipriano, M.J.2
Novichkov, P.S.3
Minovitsky, S.4
Vinogradov, D.V.5
Arkin, A.6
-
16
-
-
58149179979
-
EcoCyc: A comprehensive view of Escherichia coli biology
-
Available at:
-
Keseler, I.M., Bonavides-Martinez, C., Collado-Vides, J., Gama-Castro, S., Gunsalus, R.P., Johnson, D.A., et al. (2009). EcoCyc: a comprehensive view of Escherichia coli biology. Nucleic Acids Res 37, D464-D470. Available at: http:==EcoCyc.org
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Keseler, I.M.1
Bonavides-Martinez, C.2
Collado-Vides, J.3
Gama-Castro, S.4
Gunsalus, R.P.5
Johnson, D.A.6
-
17
-
-
34447499141
-
Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake
-
Data imported from
-
Kingsford, C.L., Ayanbule, K., and Salzberg, S.L. (2007). Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake. Genome Biol 8, R22. Data imported from http:==transterm.cbcb.umd.edu=tt=Geobacter-sulfurreducens.tt
-
(2007)
Genome Biol
, vol.8
-
-
Kingsford, C.L.1
Ayanbule, K.2
Salzberg, S.L.3
-
18
-
-
34249688200
-
Identification of fur and RpoS transcription regulatory sites using genome-wide expression profiling in a relGsu mutant of Geobacter sulfurreducens
-
Krushkal, J., Yan, B., Didonato, L.N., Puljic, M., Nevin, K.P., Woodard, T.L., et al. (2007). Identification of Fur and RpoS transcription regulatory sites using genome-wide expression profiling in a relGsu mutant of Geobacter sulfurreducens. Funct Integrat Genomics 7, 229-255
-
(2007)
Funct Integrat Genomics
, vol.7
, pp. 229-255
-
-
Krushkal, J.1
Yan, B.2
Didonato, L.N.3
Puljic, M.4
Nevin, K.P.5
Woodard, T.L.6
-
19
-
-
70349724905
-
-
Krushkal, J., Puljic, M., Yan, B., Barbe, J.F., Mahadevan, R., Postier, B., et al. (2008). Genome regions involved in multiple regulatory pathways identified from GSEL, a genome-wide database of regulatory sequence elements of Geobacter sulfurreducens
-
(2008)
Genome Regions Involved in Multiple Regulatory Pathways Identified from GSEL, A Genome-wide Database of Regulatory Sequence Elements of Geobacter Sulfurreducens
-
-
Krushkal, J.1
Puljic, M.2
Yan, B.3
Barbe, J.F.4
Mahadevan, R.5
Postier, B.6
-
20
-
-
70349710992
-
Biomedical engineering and informatics: New developments and the future
-
BMEI, (IEEE Computer Society, Las Alamitos, CA)
-
BMEI2008. Biomedical engineering and informatics: new developments and the future. In Proceedings the First International Conference on Biomedical Engineering and Informatics (IEEE Computer Society, Las Alamitos, CA), pp. 424-431
-
(2008)
Proceedings the First International Conference on Biomedical Engineering and Informatics
, pp. 424-431
-
-
-
21
-
-
61349179410
-
Diversity of promoter elements in the upstream regions of differentially expressed operons of a Geobacter sulfurreducens mutant adapted to disruption in electron transfer
-
Krushkal, J., Leang, C., Barbe, J.F., Puljic, M., Yan, B., Adkins, R.M., et al. (2009). Diversity of promoter elements in the upstream regions of differentially expressed operons of a Geobacter sulfurreducens mutant adapted to disruption in electron transfer. Funct Integrat Genomics 9, 15-25
-
(2009)
Funct Integrat Genomics
, vol.9
, pp. 15-25
-
-
Krushkal, J.1
Leang, C.2
Barbe, J.F.3
Puljic, M.4
Yan, B.5
Adkins, R.M.6
-
22
-
-
24344443251
-
Adaptation to disruption of the electron transfer pathway for Fe(III) reduction in Geobacter sulfurreducens
-
Leang, C., Adams, L.A., Chin, K.J., Nevin, K.P., Methe, B.A., Webster, J., et al. (2005). Adaptation to disruption of the electron transfer pathway for Fe(III) reduction in Geobacter sulfurreducens. J Bacteriol 187, 5918-5926
-
(2005)
J Bacteriol
, vol.187
, pp. 5918-5926
-
-
Leang, C.1
Adams, L.A.2
Chin, K.J.3
Nevin, K.P.4
Methe, B.A.5
Webster, J.6
-
23
-
-
68849107920
-
RpoN is an essential sigma factor in Geobacter sulfurreducens
-
Leang, C., Krushkal, J., Ueki, T., Puljic, M., Juárez, K., Núñ ez, C., et al. (2009). RpoN is an essential sigma factor in Geobacter sulfurreducens. BMC Genomics 10, 331
-
(2009)
BMC Genomics
, vol.10
, pp. 331
-
-
Leang, C.1
Krushkal, J.2
Ueki, T.3
Puljic, M.4
Juárez, K.5
Núñez, C.6
-
24
-
-
0035228215
-
BioProspector: Discovering conserved DNA motifs in upstream regulatory regions of coexpressed genes
-
Liu, X., Brutlag, D.L., Liu, J.S. (2001). BioProspector: discovering conserved DNA motifs in upstream regulatory regions of coexpressed genes. Pacific Symp Biocomput 6, 127-138
-
(2001)
Pacific Symp Biocomput
, vol.6
, pp. 127-138
-
-
Liu, X.1
Brutlag, D.L.2
Liu, J.S.3
-
25
-
-
0029862989
-
Phylogenetic analysis of dissimilatory Fe(III)-reducing bacteria
-
Lonergan, D.J., Jenter, H.L., Coates, J.D., Phillips, E.J., Schmidt, T.M., Lovley, D.R. (1996). Phylogenetic analysis of dissimilatory Fe(III)-reducing bacteria. J Bacteriol 178, 2402-2408
-
(1996)
J Bacteriol
, vol.178
, pp. 2402-2408
-
-
Lonergan, D.J.1
Jenter, H.L.2
Coates, J.D.3
Phillips, E.J.4
Schmidt, T.M.5
Lovley, D.R.6
-
26
-
-
57049092332
-
Electricity production with electricigens
-
C. S. Harwood, and A. L. Demain, eds. Bioenergy (ASM Press, Herndon, VA)
-
Lovley, D.R., and Nevin, K. (2008). Electricity production with electricigens. In J. Wall, C. S. Harwood, and A. L. Demain, eds. Bioenergy (ASM Press, Herndon, VA), pp. 295-306
-
(2008)
In J. Wall
, pp. 295-306
-
-
Lovley, D.R.1
Nevin, K.2
-
27
-
-
7044222207
-
Dissimilatory Fe(III) and Mn(IV) reduction
-
Lovley, D.R., Holmes, D.E., and Nevin, K.P. (2004). Dissimilatory Fe(III) and Mn(IV) reduction. Adv Microbial Physiol 49, 219-286
-
(2004)
Adv Microbial Physiol
, vol.49
, pp. 219-286
-
-
Lovley, D.R.1
Holmes, D.E.2
Nevin, K.P.3
-
28
-
-
44349147583
-
Systems biology approach to bioremediation with extracellular electron transfer
-
E. Diaz, ed. (Caister Academic Press, Norfolk, UK)
-
Lovley, D.R., Mahadevan, R., and Nevin, K. (2008). Systems biology approach to bioremediation with extracellular electron transfer. In E. Diaz, ed. Microbial Bioremediation: Genomics and Molecular Biology (Caister Academic Press, Norfolk, UK), pp. 71-96
-
(2008)
Microbial Bioremediation: Genomics and Molecular Biology
, pp. 71-96
-
-
Lovley, D.R.1
Mahadevan, R.2
Nevin, K.3
-
29
-
-
40349089020
-
Characterizing regulation of metabolism in Geobacter sulfurreducens through genome-wide expression data and sequence analysis
-
Mahadevan, R., Yan, B., Postier, B., Nevin, K., Woodard, T., O'Neil, R., et al. (2008). Characterizing regulation of metabolism in Geobacter sulfurreducens through genome-wide expression data and sequence analysis. OMICS 12, 1-27
-
(2008)
OMICS
, vol.12
, pp. 1-27
-
-
Mahadevan, R.1
Yan, B.2
Postier, B.3
Nevin, K.4
Woodard, T.5
O'Neil, R.6
-
30
-
-
8844258763
-
BacTregulators: A database of transcriptional regulators in bacteria and archaea
-
Available at:
-
Martinez-Bueno, M., Molina-Henares, A.J., Pareja, E., Ramos, J.L., Tobes, R. (2004). BacTregulators: a database of transcriptional regulators in bacteria and archaea. Bioinformatics 20, 2787-2791. Available at: http:==www. bactregulators.org=
-
(2004)
Bioinformatics
, vol.20
, pp. 2787-2791
-
-
Martinez-Bueno, M.1
Molina-Henares, A.J.2
Pareja, E.3
Ramos, J.L.4
Tobes, R.5
-
31
-
-
0034669669
-
Predicting regulons and their cis-regulatory motifs by comparative genomics
-
McGuire, A.M., and Church, G.M. (2000). Predicting regulons and their cis-regulatory motifs by comparative genomics. Nucleic Acids Res 28, 4523-4530
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 4523-4530
-
-
McGuire, A.M.1
Church, G.M.2
-
32
-
-
17644366759
-
Transcription attenuation: A highly conserved regulatory strategy used by bacteria
-
Available at:
-
Merino, E., and Yanofsky, C. (2005). Transcription attenuation: a highly conserved regulatory strategy used by bacteria. Trends Genet 21, 260-264. Available at: http:=cmgm.stanford .edu=merino=Geobacter-sulfurreducens=indice- alpha.html
-
(2005)
Trends Genet
, vol.21
, pp. 260-264
-
-
Merino, E.1
Yanofsky, C.2
-
33
-
-
0346243803
-
The genome of Geobacter sulfurreducens: Insights into metal reduction in subsurface environments
-
List of protein-coding gene annotations is available at
-
Methé, B.A., Nelson, K.E., Eisen, J.A., Paulsen, I.T., Nelson, W., Heidelberg, J.F., et al. (2003). The genome of Geobacter sulfurreducens: insights into metal reduction in subsurface environments. Science 302, 1967-1969. List of protein-coding gene annotations is available at http:==www.ncbi.nlm.nih.gov= entrez=query.fcgi?db=genome&cmd= Retrieve&dopt= Protein+Table&list-uids=1379
-
(2003)
Science
, vol.302
, pp. 1967-1969
-
-
Methé, B.A.1
Nelson, K.E.2
Eisen, J.A.3
Paulsen, I.T.4
Nelson, W.5
Heidelberg, J.F.6
-
34
-
-
17644418853
-
DNA microarray analysis of nitrogen fixation and Fe(III) reduction in Geobacter sulfurreducens
-
Methé, B.A., Webster, J., Nevin, K., Butler, J., and Lovley, D.R. (2005). DNA microarray analysis of nitrogen fixation and Fe(III) reduction in Geobacter sulfurreducens. Appl Environ Microbiol 71, 2530-2538
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 2530-2538
-
-
Methé, B.A.1
Webster, J.2
Nevin, K.3
Butler, J.4
Lovley, D.R.5
-
35
-
-
4143121402
-
Change in bacterial community structure during in situ biostimulation of subsurface sediment cocontaminated with uranium and nitrate
-
North, N.N., Dollhopf, S.L., Petrie, L., Istok, J.D., Balkwill, D.L., Kostka, J.E. (2004). Change in bacterial community structure during in situ biostimulation of subsurface sediment cocontaminated with uranium and nitrate. Appl Environ Microbiol 70, 4911-4920
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 4911-4920
-
-
North, N.N.1
Dollhopf, S.L.2
Petrie, L.3
Istok, J.D.4
Balkwill, D.L.5
Kostka, J.E.6
-
36
-
-
3843061164
-
The RpoS sigma factor in the dissimilatory Fe III)-reducing bacterium Geobacter sulfurreducens
-
Núñ ez, C., Adams, L., Childers, S., and Lovley, D.R. (2004). The RpoS sigma factor in the dissimilatory Fe(III)-reducing bacterium Geobacter sulfurreducens. J Bacteriol 186, 5543-5546
-
(2004)
J Bacteriol
, vol.186
, pp. 5543-5546
-
-
Núñez, C.1
Adams, L.2
Childers, S.3
Lovley, D.R.4
-
37
-
-
33646242970
-
ExtraTrain: A database of Extragenic regions and transcriptional information in prokaryotic organisms
-
Available at;
-
Pareja, E., Pareja-Tobes, P., Manrique, M., Pareja-Tobes, E., Bonal, J., Tobes, R. (2006). ExtraTrain: a database of Extragenic regions and transcriptional information in prokaryotic organisms. BMC Microbiol 6, 29. Available at; http:==www .era27.com=ExtraTrain=
-
(2006)
BMC Microbiol
, vol.6
, pp. 29
-
-
Pareja, E.1
Pareja-Tobes, P.2
Manrique, M.3
Pareja-Tobes, E.4
Bonal, J.5
Tobes, R.6
-
38
-
-
70349707763
-
-
Available at:
-
Pedersen, B. (2008). Available at: http:==code.google.com=p=genome- browser=
-
(2008)
-
-
Pedersen, B.1
-
39
-
-
33846073825
-
Tractor-DB (version 2.0): A database of regulatory interactions in gamma-proteobacterial genomes
-
Available at:
-
Pérez, A.G., Angarica, V.E., Vasconcelos, A.T.R., Collado-Vides, J. (2007). Tractor-DB (version 2.0): a database of regulatory interactions in gamma-proteobacterial genomes. Nucleic Acids Res. 35, D132-D136. Available at: http:==www.ccg.unam.mx=tractorDB
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Pérez, A.G.1
Angarica, V.E.2
Vasconcelos, A.T.R.3
Collado-Vides, J.4
-
40
-
-
70349726379
-
-
Available at:
-
PHP Classes Repository. (2008). Available at: http:==www .phpclasses.org=
-
(2008)
PHP Classes Repository
-
-
-
41
-
-
70349710990
-
-
Public version:
-
Qu, Y., Brown, P., Barbe, J.F., Puljic, M., Merino, E., Adkins, R.M., Lovley, D.R., Krushkal, J. GSEL database version 2. Public version: http:==geobacter.org=research=gsel2=; passwordprotected version for Geobacter Project users: http:==geobacter= org=refs=gsel2=; help file: http:==geobacter.org=research=gsel2= help2.html
-
Passwordprotected Version for Geobacter Project Users: Http:==geobacter= org=refs=gsel2=; Help File: http:==geobacter.org=research=gsel2= help2.html
-
-
Qu, Y.1
Brown, P.2
Barbe, J.F.3
Puljic, M.4
Merino, E.5
Adkins, R.M.6
Lovley, D.R.7
Krushkal, J.8
-
42
-
-
0032573426
-
A comprehensive library of DNA-binding site matrices for 55 proteins applied to the complete Escherichia coli K-12 genome
-
Available at:
-
Robison, K., McGuire, A.M., and Church, G.M. (1998). A comprehensive library of DNA-binding site matrices for 55 proteins applied to the complete Escherichia coli K-12 genome. J Mol Biol 284, 241-254. Available at: http:==arep.med.harvard.edu=dpinteract=
-
(1998)
J Mol Biol
, vol.284
, pp. 241-254
-
-
Robison, K.1
McGuire, A.M.2
Church, G.M.3
-
43
-
-
22544432327
-
Reconstruction of regulatory and metabolic pathways in metal-reducing d-proteobacteria
-
Rodionov, D.A., Dubchak, I., Arkin, A., Alm, E., and Gelfand, M.S. (2004). Reconstruction of regulatory and metabolic pathways in metal-reducing d-proteobacteria. Genome Biol 5, R90
-
(2004)
Genome Biol
, vol.5
-
-
Rodionov, D.A.1
Dubchak, I.2
Arkin, A.3
Alm, E.4
Gelfand, M.S.5
-
44
-
-
0031787969
-
Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation
-
Roth, F.P., Hughes, J.D., Estep, P.W., and Church, G.M. (1998). Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation. Nat Biotechnol 16, 939-945
-
(1998)
Nat Biotechnol
, vol.16
, pp. 939-945
-
-
Roth, F.P.1
Hughes, J.D.2
Estep, P.W.3
Church, G.M.4
-
45
-
-
0023001414
-
Sequence periodicities in chicken nucleosome core DNA
-
Satchwell, S.C., Drew, H.R., and Travers, A.A. (1986). Sequence periodicities in chicken nucleosome core DNA. J Mol Biol 191, 659-675
-
(1986)
J Mol Biol
, vol.191
, pp. 659-675
-
-
Satchwell, S.C.1
Drew, H.R.2
Travers, A.A.3
-
46
-
-
38549162091
-
DBTBS: A database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information
-
Available at:
-
Sierro, N., Makita, Y., de Hoon, M., and Nakai, K. (2008). DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information. Nucleic Acids Res. 36, D93-D96. Available at: http:=dbtbs.hgc.jp
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Sierro, N.1
Makita, Y.2
De Hoon, M.3
Nakai, K.4
-
47
-
-
0036137327
-
A probabilistic method for identifying start codons in bacterial genomes
-
Suzek, B.E., Ermolaeva, M.D., Schreiber, M., and Salzberg, S.L. (2001). A probabilistic method for identifying start codons in bacterial genomes. Bioinformatics 17, 1123-1130
-
(2001)
Bioinformatics
, vol.17
, pp. 1123-1130
-
-
Suzek, B.E.1
Ermolaeva, M.D.2
Schreiber, M.3
Salzberg, S.L.4
-
48
-
-
0035162592
-
The COG database: New developments in phylogenetic classification of proteins from complete genomes
-
Tatusov, R.L., Natale, D.A., Garkavtsev, I.V., Tatusova, T.A., Shankavaram, U.T., Rao, B.S., et al. (2001). The COG database: new developments in phylogenetic classification of proteins from complete genomes. Nucleic Acids Res. 29, 22-28
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 22-28
-
-
Tatusov, R.L.1
Natale, D.A.2
Garkavtsev, I.V.3
Tatusova, T.A.4
Shankavaram, U.T.5
Rao, B.S.6
-
49
-
-
0042902833
-
The COG database: An updated version includes eukaryotes
-
Tatusov, R., Fedorova, N., Jackson, J., Jacobs, A., Kiryutin, B., Koonin, E., et al. (2003). The COG database: an updated version includes eukaryotes. BMC Bioinformatics 4, 41
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 41
-
-
Tatusov, R.1
Fedorova, N.2
Jackson, J.3
Jacobs, A.4
Kiryutin, B.5
Koonin, E.6
-
50
-
-
1542377296
-
Community structure and metabolism through reconstruction of microbial genomes from the environment
-
Tyson, G.W., Chapman, J., Hugenholtz, P., Allen, E.E., Ram, R.J., Richardson, P.M., et al. (2004). Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature 428, 37-43
-
(2004)
Nature
, vol.428
, pp. 37-43
-
-
Tyson, G.W.1
Chapman, J.2
Hugenholtz, P.3
Allen, E.E.4
Ram, R.J.5
Richardson, P.M.6
-
51
-
-
51549089947
-
Heat-shock sigma factor RpoH from Geobacter sulfurreducens
-
Ueki, T., and Lovley, D.R. (2007). Heat-shock sigma factor RpoH from Geobacter sulfurreducens. Microbiology 384, 73-95
-
(2007)
Microbiology
, vol.384
, pp. 73-95
-
-
Ueki, T.1
Lovley, D.R.2
-
52
-
-
33750957661
-
Computational prediction of RpoS and RpoD regulatory sites in Geobacter sulfurreducens using sequence and gene expression information
-
Yan, B., Núñez, C., Ueki, T., Esteve-Núñez, A., Puljic, M., Adkins, R.M., et al. (2006). Computational prediction of RpoS and RpoD regulatory sites in Geobacter sulfurreducens using sequence and gene expression information. Gene 384, 73-95
-
(2006)
Gene
, vol.384
, pp. 73-95
-
-
Yan, B.1
Núñez, C.2
Ueki, T.3
Esteve-Núñez, A.4
Puljic, M.5
Adkins, R.M.6
-
53
-
-
34548415488
-
Genome-wide similarity search for transcription factors and their binding sites in a metal-reducing prokaryote Geobacter sulfurreducens
-
Yan, B., Lovley, D.R., and Krushkal, J. (2007). Genome-wide similarity search for transcription factors and their binding sites in a metal-reducing prokaryote Geobacter sulfurreducens. BioSystems 90, 421-441
-
(2007)
BioSystems
, vol.90
, pp. 421-441
-
-
Yan, B.1
Lovley, D.R.2
Krushkal, J.3
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