메뉴 건너뛰기




Volumn 121, Issue 3, 2010, Pages 549-565

High-throughput identification of genetic markers using representational oligonucleotide microarray analysis

Author keywords

[No Author keywords available]

Indexed keywords

ANCHOR MARKER; BACTERIAL ARTIFICIAL CHROMOSOMES; BETA VULGARIS; CROP PLANTS; EXPRESSED SEQUENCE TAGS; GENETIC MAP; GENETIC MARKERS; GENOTYPING; HIGH-THROUGHPUT; LARGE-SCALE APPLICATIONS; LINKAGE GROUPS; MAPPING POPULATIONS; OLIGONUCLEOTIDE MICROARRAY; PARENTAL LINES;

EID: 77957734614     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-010-1329-2     Document Type: Article
Times cited : (6)

References (67)
  • 1
    • 0000243212 scopus 로고
    • Formulas and tables to facilitate the calculation of recombination values in heredity
    • Allard RW (1956) Formulas and tables to facilitate the calculation of recombination values in heredity. Hilgardia 24: 235-278.
    • (1956) Hilgardia , vol.24 , pp. 235-278
    • Allard, R.W.1
  • 3
    • 70350218974 scopus 로고    scopus 로고
    • An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III
    • Angiosperm Phylogeny Group
    • Angiosperm Phylogeny Group (2009) An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III. Bot J Linn Soc 161: 105-121.
    • (2009) Bot J Linn Soc , vol.161 , pp. 105-121
  • 4
    • 51249171246 scopus 로고
    • Nuclear DNA content of some important plant species
    • Arumuganathan K, Earle ED (1991) Nuclear DNA content of some important plant species. Plant Mol Biol Rep 9: 208-218.
    • (1991) Plant Mol Biol Rep , vol.9 , pp. 208-218
    • Arumuganathan, K.1    Earle, E.D.2
  • 7
    • 0019302053 scopus 로고
    • Construction of a genetic-linkage map in man using restriction fragment length polymorphisms
    • Botstein D, White RL, Skolnick M, Davis RW (1980) Construction of a genetic-linkage map in man using restriction fragment length polymorphisms. Am J Hum Genet 32: 314-331.
    • (1980) Am J Hum Genet , vol.32 , pp. 314-331
    • Botstein, D.1    White, R.L.2    Skolnick, M.3    Davis, R.W.4
  • 9
    • 40949130394 scopus 로고    scopus 로고
    • Marker-assisted selection: an approach for precision plant breeding in the twenty-first century
    • Collard BCY, Mackill DJ (2008) Marker-assisted selection: an approach for precision plant breeding in the twenty-first century. Philos Trans R Soc Lond B Biol Sci 363: 557-572.
    • (2008) Philos Trans R Soc Lond B Biol Sci , vol.363 , pp. 557-572
    • Collard, B.C.Y.1    Mackill, D.J.2
  • 10
    • 18744372502 scopus 로고    scopus 로고
    • An introduction to markers, quantitative trait loci (QTL) mapping and marker-assisted selection for crop improvement: the basic concepts
    • Collard BCY, Jahufer MZZ, Brouwer JB, Pang ECK (2005) An introduction to markers, quantitative trait loci (QTL) mapping and marker-assisted selection for crop improvement: the basic concepts. Euphytica 142: 169-196.
    • (2005) Euphytica , vol.142 , pp. 169-196
    • Collard, B.C.Y.1    Jahufer, M.Z.Z.2    Brouwer, J.B.3    Pang, E.C.K.4
  • 11
    • 41149103105 scopus 로고    scopus 로고
    • Detection and validation of single feature polymorphisms in cowpea (Vigna unguiculata L. Walp) using a soybean genome array
    • Das S, Bhat PR, Sudhakar C, Ehlers JD, Wanamaker S, Roberts PA, Cui X, Close TJ (2008) Detection and validation of single feature polymorphisms in cowpea (Vigna unguiculata L. Walp) using a soybean genome array. BMC Genomics 9: 107.
    • (2008) BMC Genomics , vol.9 , pp. 107
    • Das, S.1    Bhat, P.R.2    Sudhakar, C.3    Ehlers, J.D.4    Wanamaker, S.5    Roberts, P.A.6    Cui, X.7    Close, T.J.8
  • 13
    • 52649157765 scopus 로고    scopus 로고
    • Substantial biases in ultra-short read data sets from high-throughput DNA sequencing
    • Dohm JC, Lottaz C, Borodina T, Himmelbauer H (2008) Substantial biases in ultra-short read data sets from high-throughput DNA sequencing. Nucleic Acids Res 36: e105.
    • (2008) Nucleic Acids Res , vol.36
    • Dohm, J.C.1    Lottaz, C.2    Borodina, T.3    Himmelbauer, H.4
  • 14
    • 58149105394 scopus 로고    scopus 로고
    • Haplotype divergence in Beta vulgaris and microsynteny with sequenced plant genomes
    • Dohm JC, Lange C, Reinhardt R, Himmelbauer H (2009) Haplotype divergence in Beta vulgaris and microsynteny with sequenced plant genomes. Plant J 57: 14-26.
    • (2009) Plant J , vol.57 , pp. 14-26
    • Dohm, J.C.1    Lange, C.2    Reinhardt, R.3    Himmelbauer, H.4
  • 15
    • 0024826647 scopus 로고
    • A simple scheme for preliminary ordering of multiple loci: application to 45 CF families
    • Falk CT (1989) A simple scheme for preliminary ordering of multiple loci: application to 45 CF families. Prog Clin Biol Res 329: 17-22.
    • (1989) Prog Clin Biol Res , vol.329 , pp. 17-22
    • Falk, C.T.1
  • 19
    • 0038555321 scopus 로고    scopus 로고
    • A bacterial artificial chromosome (BAC) library of sugar beet and a physical map of the region encompassing the bolting gene B
    • Hohmann U, Jacobs G, Telgmann A, Gaafar RM, Alam S, Jung C (2003) A bacterial artificial chromosome (BAC) library of sugar beet and a physical map of the region encompassing the bolting gene B. Mol Genet Genomics 269: 126-136.
    • (2003) Mol Genet Genomics , vol.269 , pp. 126-136
    • Hohmann, U.1    Jacobs, G.2    Telgmann, A.3    Gaafar, R.M.4    Alam, S.5    Jung, C.6
  • 20
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA sequence assembly program
    • Huang XQ, Madan A (1999) CAP3: A DNA sequence assembly program. Genome Res 9: 868-877.
    • (1999) Genome Res , vol.9 , pp. 868-877
    • Huang, X.Q.1    Madan, A.2
  • 21
    • 70649085835 scopus 로고    scopus 로고
    • The genome of the cucumber, Cucumis sativus L
    • Huang S, Li R, Zhang Z et al (2009) The genome of the cucumber, Cucumis sativus L. Nat Genet 41: 1275-1281.
    • (2009) Nat Genet , vol.41 , pp. 1275-1281
    • Huang, S.1    Li, R.2    Zhang, Z.3
  • 22
    • 84907150192 scopus 로고    scopus 로고
    • The map-based sequence of the rice genome
    • International Rice Genome Sequencing Project
    • International Rice Genome Sequencing Project (2005) The map-based sequence of the rice genome. Nature 436: 793-800.
    • (2005) Nature , vol.436 , pp. 793-800
  • 23
    • 33845616267 scopus 로고    scopus 로고
    • AntMap: Constructing genetic linkage maps using an ant colony optimization algorithm
    • Iwata H, Ninomiya S (2006) AntMap: Constructing genetic linkage maps using an ant colony optimization algorithm. Breed Sci 56: 371-377.
    • (2006) Breed Sci , vol.56 , pp. 371-377
    • Iwata, H.1    Ninomiya, S.2
  • 24
    • 0035866187 scopus 로고    scopus 로고
    • Diversity arrays: a solid state technology for sequence information independent genotyping
    • Jaccoud D, Peng K, Feinstein D, Kilian A (2001) Diversity arrays: a solid state technology for sequence information independent genotyping. Nucleic Acids Res 29: E25.
    • (2001) Nucleic Acids Res , vol.29
    • Jaccoud, D.1    Peng, K.2    Feinstein, D.3    Kilian, A.4
  • 25
    • 34848886909 scopus 로고    scopus 로고
    • The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    • Jaillon O, Aury JM, Noel B et al (2007) The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature 449: 463-467.
    • (2007) Nature , vol.449 , pp. 463-467
    • Jaillon, O.1    Aury, J.M.2    Noel, B.3
  • 26
    • 56649092822 scopus 로고    scopus 로고
    • Ordering dominant markers in F-2 populations
    • Jansen J (2009) Ordering dominant markers in F-2 populations. Euphytica 165: 401-417.
    • (2009) Euphytica , vol.165 , pp. 401-417
    • Jansen, J.1
  • 30
    • 0000732266 scopus 로고
    • The estimation of map distances from recombination values
    • Kosambi DD (1944) The estimation of map distances from recombination values. Ann Eugenics 12: 172-175.
    • (1944) Ann Eugenics , vol.12 , pp. 172-175
    • Kosambi, D.D.1
  • 33
    • 34648829226 scopus 로고    scopus 로고
    • Comparative effectiveness of sugar beet microsatellite markers isolated from genomic libraries and GenBank ESTs to map the sugar beet genome
    • Laurent V, Devaux P, Thiel T, Viard F, Mielordt S, Touzet P, Quillet MC (2007) Comparative effectiveness of sugar beet microsatellite markers isolated from genomic libraries and GenBank ESTs to map the sugar beet genome. Theor Appl Genet 115: 793-805.
    • (2007) Theor Appl Genet , vol.115 , pp. 793-805
    • Laurent, V.1    Devaux, P.2    Thiel, T.3    Viard, F.4    Mielordt, S.5    Touzet, P.6    Quillet, M.C.7
  • 34
    • 11244351674 scopus 로고    scopus 로고
    • Development and assessment of microarray-based DNA fingerprinting in Eucalyptus grandis
    • Lezar S, Myburg AA, Berger DK, Wingfield MJ, Wingfield BD (2004) Development and assessment of microarray-based DNA fingerprinting in Eucalyptus grandis. Theor Appl Genet 109: 1329-1336.
    • (2004) Theor Appl Genet , vol.109 , pp. 1329-1336
    • Lezar, S.1    Myburg, A.A.2    Berger, D.K.3    Wingfield, M.J.4    Wingfield, B.D.5
  • 35
    • 0027468779 scopus 로고
    • Cloning the differences between two complex genomes
    • Lisitsyn N, Lisitsyn N, Wigler M (1993) Cloning the differences between two complex genomes. Science 259: 946-951.
    • (1993) Science , vol.259 , pp. 946-951
    • Lisitsyn, N.1    Lisitsyn, N.2    Wigler, M.3
  • 37
    • 34548848392 scopus 로고    scopus 로고
    • Microarray-based representational analysis of DNA copy number: preparation of target DNA
    • D. Bowtell and J. Sambrook (Eds.), Cold Spring Harbor: Cold Spring Harbor Laboratory Press
    • Lucito R, Wigler M (2003) Microarray-based representational analysis of DNA copy number: preparation of target DNA. In: Bowtell D, Sambrook J (eds) DNA microarrays-a molecular cloning manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, pp 386-391.
    • (2003) DNA Microarrays-a Molecular Cloning Manual , pp. 386-391
    • Lucito, R.1    Wigler, M.2
  • 42
    • 0142092457 scopus 로고    scopus 로고
    • Efficient multipoint mapping: making use of dominant repulsion-phase markers
    • Mester DI, Ronin YI, Hu Y, Peng J, Nevo E, Korol AB (2003) Efficient multipoint mapping: making use of dominant repulsion-phase markers. Theor Appl Genet 107: 1102-1112.
    • (2003) Theor Appl Genet , vol.107 , pp. 1102-1112
    • Mester, D.I.1    Ronin, Y.I.2    Hu, Y.3    Peng, J.4    Nevo, E.5    Korol, A.B.6
  • 43
    • 42949157236 scopus 로고    scopus 로고
    • The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)
    • Ming R, Hou S, Feng Y et al (2008) The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus). Nature 452: 991-996.
    • (2008) Nature , vol.452 , pp. 991-996
    • Ming, R.1    Hou, S.2    Feng, Y.3
  • 44
    • 14744278158 scopus 로고    scopus 로고
    • Multiplexed, linkage group-specific SNP marker sets for rapid genetic mapping and fingerprinting of sugar beet (Beta vulgaris L.)
    • Mohring S, Salamini F, Schneider K (2004) Multiplexed, linkage group-specific SNP marker sets for rapid genetic mapping and fingerprinting of sugar beet (Beta vulgaris L.). Mol Breeding 14: 475-488.
    • (2004) Mol Breeding , vol.14 , pp. 475-488
    • Mohring, S.1    Salamini, F.2    Schneider, K.3
  • 46
    • 58449137410 scopus 로고    scopus 로고
    • The Sorghum bicolor genome and the diversification of grasses
    • Paterson AH, Bowers JE, Bruggmann R et al (2009) The Sorghum bicolor genome and the diversification of grasses. Nature 457: 551-556.
    • (2009) Nature , vol.457 , pp. 551-556
    • Paterson, A.H.1    Bowers, J.E.2    Bruggmann, R.3
  • 47
    • 0033786601 scopus 로고    scopus 로고
    • Molecular genetic maps in wild emmer wheat, Triticum dicoccoides: genome-wide coverage, massive negative interference, and putative quasi-linkage
    • Peng J, Korol AB, Fahima T, Roder MS, Ronin YI, Li YC, Nevo E (2000) Molecular genetic maps in wild emmer wheat, Triticum dicoccoides: genome-wide coverage, massive negative interference, and putative quasi-linkage. Genome Res 10: 1509-1531.
    • (2000) Genome Res , vol.10 , pp. 1509-1531
    • Peng, J.1    Korol, A.B.2    Fahima, T.3    Roder, M.S.4    Ronin, Y.I.5    Li, Y.C.6    Nevo, E.7
  • 48
    • 0032102347 scopus 로고    scopus 로고
    • Marker-assisted selection: new tools and strategies
    • Ribaut JM, Hoisington D (1998) Marker-assisted selection: new tools and strategies. Trends Plant Sci 3: 236-239.
    • (1998) Trends Plant Sci , vol.3 , pp. 236-239
    • Ribaut, J.M.1    Hoisington, D.2
  • 49
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: The European molecular biology open software suite
    • Rice P, Longden I, Bleasby A (2000) EMBOSS: The European molecular biology open software suite. Trends Genet 16: 276-277.
    • (2000) Trends Genet , vol.16 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3
  • 52
    • 0028291906 scopus 로고
    • The robustness of recombination frequency estimates in intercrosses with dominant markers
    • Sall T, Nilsson NO (1994) The robustness of recombination frequency estimates in intercrosses with dominant markers. Genetics 137: 589-596.
    • (1994) Genetics , vol.137 , pp. 589-596
    • Sall, T.1    Nilsson, N.O.2
  • 53
    • 74549221016 scopus 로고    scopus 로고
    • Genome sequence of the palaeopolyploid soybean
    • Schmutz J, Cannon SB, Schlueter et al (2010) Genome sequence of the palaeopolyploid soybean. Nature 463: 178-183.
    • (2010) Nature , vol.463 , pp. 178-183
    • Schmutz, J.1    Cannon, S.B.2    Schlueter3
  • 57
    • 78049307775 scopus 로고    scopus 로고
    • RepeatMasker Open-3.0
    • Smit AFA, Hubley R, Green P (1996-2004) RepeatMasker Open-3. 0. http://www. repeatmasker. org.
    • (1996)
    • Smit, A.F.A.1    Hubley, R.2    Green, P.3
  • 58
    • 8744230085 scopus 로고    scopus 로고
    • A high-density microsatellite consensus map for bread wheat (Triticum aestivum L.)
    • Somers DJ, Isaac P, Edwards K (2004) A high-density microsatellite consensus map for bread wheat (Triticum aestivum L.). Theor Appl Genet 109: 1105-1114.
    • (2004) Theor Appl Genet , vol.109 , pp. 1105-1114
    • Somers, D.J.1    Isaac, P.2    Edwards, K.3
  • 59
    • 38149041668 scopus 로고    scopus 로고
    • Representational oligonucleotide microarray analysis (ROMA) and comparison of binning and change-point methods of analysis: application to detection of de122q11.2 (DiGeorge) syndrome
    • Stanczak CM, Chen ZG, Nelson SE, Suchard M, McCabe ERB, McGhee S (2008) Representational oligonucleotide microarray analysis (ROMA) and comparison of binning and change-point methods of analysis: application to detection of de122q11. 2 (DiGeorge) syndrome. Hum Mutat 29: 176-181.
    • (2008) Hum Mutat , vol.29 , pp. 176-181
    • Stanczak, C.M.1    Chen, Z.G.2    Nelson, S.E.3    Suchard, M.4    McCabe, E.R.B.5    McGhee, S.6
  • 60
    • 34247863802 scopus 로고    scopus 로고
    • A new strategy for estimating recombination fractions between dominant markers from an F2 population
    • Tan YD, Fu YX (2007) A new strategy for estimating recombination fractions between dominant markers from an F2 population. Genetics 175: 923-931.
    • (2007) Genetics , vol.175 , pp. 923-931
    • Tan, Y.D.1    Fu, Y.X.2
  • 62
    • 0042622239 scopus 로고    scopus 로고
    • NEBcutter: a program to cleave DNA with restriction enzymes
    • Vincze T, Posfai J, Roberts RJ (2003) NEBcutter: a program to cleave DNA with restriction enzymes. Nucleic Acids Res 31: 3688-3691.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3688-3691
    • Vincze, T.1    Posfai, J.2    Roberts, R.J.3
  • 63
    • 0036256695 scopus 로고    scopus 로고
    • MapChart: software for the graphical presentation of linkage maps and QTLs
    • Voorrips RE (2002) MapChart: software for the graphical presentation of linkage maps and QTLs. J Hered 93: 77-78.
    • (2002) J Hered , vol.93 , pp. 77-78
    • Voorrips, R.E.1
  • 65
    • 0024582686 scopus 로고
    • Abundant class of human DNA polymorphisms which can be typed using the polymerase chain-reaction
    • Weber JL, May PE (1989) Abundant class of human DNA polymorphisms which can be typed using the polymerase chain-reaction. Am J Hum Genet 44: 388-396.
    • (1989) Am J Hum Genet , vol.44 , pp. 388-396
    • Weber, J.L.1    May, P.E.2
  • 66
    • 0035189310 scopus 로고    scopus 로고
    • Spidey: a tool for mRNA-to-genomic alignments
    • Wheelan SJ, Church DM, Ostell JM (2001) Spidey: a tool for mRNA-to-genomic alignments. Genome Res 11: 1952-1957.
    • (2001) Genome Res , vol.11 , pp. 1952-1957
    • Wheelan, S.J.1    Church, D.M.2    Ostell, J.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.