Ordering dominant markers in F2 populations

Euphytica

Volumn 165, Issue 2, 2009, Pages 401-417

  Jansen, J ^a  

^a WAGENINGEN UNIVERSITY   (Netherlands)

Author keywords

Co dominant marker; Dominant marker; F2 population; Inheritance vector; Minimum number of recombinations; Multi point maximum likelihood

Indexed keywords

EID: 56649092822     PISSN: 00142336     EISSN: 15735060     Source Type: Journal    
DOI: 10.1007/s10681-008-9805-3     Document Type: Article

References (20)

1. Allard RW (1960) Principles of plant breeding. Wiley, New York
2. AP Dempster NM Laird DB Rubin 1977 Maximum likelihood from incomplete data via the EM algorithm J R Stat Soc B 39 1 38
3. AW George 2005 A novel Markov chain Monte Carlo approach for constructing accurate meiotic maps Genetics 171 791 801 10.1534/genetics.105.042705
4. J Jansen 2005 Construction of linkage maps in full-sib families of diploid outbreeding species by minimizing the number of recombinations in hidden inheritance vectors Genetics 170 2013 2025 10.1534/genetics.105.041822
5. J Jansen AG de Jong JW van Ooijen 2001 Constructing dense genetic linkage maps Theor Appl Genet 102 1113 1122 10.1007/s001220000489
6. RC Jansen H Geerlings AJ van Oeveren RC van Schaik 2001 A comment on codominant scoring of AFLP markers Genetics 158 925 926
7. S Kirkpatrick CD Gelatt MP Vecchi 1983 Optimization by simulated annealing Science 220 671 680 10.1126/science.220.4598.671
8. 2 populations Theor Appl Genet 91 74 81
9. ES Lander P Green 1987 Construction of multilocus genetic linkage maps in humans Proc Natl Acad Sci USA 84 2363 2367 10.1073/pnas.84.8.2363
10. Liu B-H (1997) Statistical genomics: linkage, mapping and QTL analysis. CRC, Boca Raton
11. DI Mester YI Ronin Y Hu J Peng E Nevo AB Korol 2003 Efficient multipoint mapping: making use of dominant repulsion-phase markers Theor Appl Genet 107 1102 1112 10.1007/s00122-003-1305-1
12. H-P Piepho G Koch 2000 Codominant analysis of banding data from a dominant marker system by normal mixtures Genetics 155 1459 1468
13. MS Ridout S Tong CJ Vowden KR Tobutt 1998 Three-point linkage analysis in crosses of allogamous plant species Genet Res 72 111 121 10.1017/ S0016672398003371
14. Rubinstein RY, Kroese DP (2004) The cross-entropy method. A unified approach to combinatorial optimization, Monte-Carlo simulation and machine learning. Springer, New York
15. P Stam 1993 Construction of integrated genetic linkage maps by means of a new computer package: JoinMap Plant J 3 739 744
16. 2 population Genetics 175 923 931 10.1534/genetics.106.064030
17. EA Thompson 1994 Monte Carlo likelihood in genetic mapping Stat Sci 9 355 366 10.1214/ss/1177010381
18. van Laarhoven PJ, Aarts EHL (1987) Simulated annealing: theory and applications. Reidel, Dordrecht
19. ® 4, Software for the calculation of genetic linkage maps in experimental populations. Kyazma B•V, Wageningen
20. RE Voorrips R Finkers L Sanjaya R Groenwold 2004 QTL mapping of anthracnose (Colletotrichum spp.) resistance in a cross between Capsicum annuum and C. chinense Theor Appl Genet 109 1275 1282 10.1007/s00122-004-1738-1