메뉴 건너뛰기




Volumn 407, Issue 2, 2010, Pages 368-373

A system for the analysis of BKV non-coding control regions: Application to clinical isolates from an HIV/AIDS patient

Author keywords

BKV; HIV AIDS; NCCR

Indexed keywords

VIRUS DNA;

EID: 77957680605     PISSN: 00426822     EISSN: 10960341     Source Type: Journal    
DOI: 10.1016/j.virol.2010.08.032     Document Type: Article
Times cited : (24)

References (44)
  • 1
    • 47949125223 scopus 로고    scopus 로고
    • Transforming growth factor-beta-mediated regulation of BK virus gene expression
    • Abend J.R., Imperiale M.J. Transforming growth factor-beta-mediated regulation of BK virus gene expression. Virology 2008, 378:6-12.
    • (2008) Virology , vol.378 , pp. 6-12
    • Abend, J.R.1    Imperiale, M.J.2
  • 2
    • 33845750574 scopus 로고    scopus 로고
    • Inhibitory effect of gamma interferon on BK virus gene expression and replication
    • Abend J.R., Low J.A., Imperiale M.J. Inhibitory effect of gamma interferon on BK virus gene expression and replication. J. Virol. 2007, 81:272-279.
    • (2007) J. Virol. , vol.81 , pp. 272-279
    • Abend, J.R.1    Low, J.A.2    Imperiale, M.J.3
  • 3
    • 0020611190 scopus 로고
    • Persistence of DNA sequences of BK virus and JC virus in normal human tissues and in diseased tissues
    • Chesters P.M., Heritage J., McCance D.J. Persistence of DNA sequences of BK virus and JC virus in normal human tissues and in diseased tissues. J. Infect. Dis. 1983, 147:676-684.
    • (1983) J. Infect. Dis. , vol.147 , pp. 676-684
    • Chesters, P.M.1    Heritage, J.2    McCance, D.J.3
  • 6
    • 0024503959 scopus 로고
    • An element of the BK virus enhancer required for DNA replication
    • Del Vecchio A.M., Steinman R.A., Ricciardi R.P. An element of the BK virus enhancer required for DNA replication. J. Virol. 1989, 63:1514-1524.
    • (1989) J. Virol. , vol.63 , pp. 1514-1524
    • Del Vecchio, A.M.1    Steinman, R.A.2    Ricciardi, R.P.3
  • 7
    • 33745599157 scopus 로고    scopus 로고
    • Human polyomavirus JC and BK persistent infection
    • Doerries K. Human polyomavirus JC and BK persistent infection. Adv. Exp. Med. Biol. 2006, 577:102-116.
    • (2006) Adv. Exp. Med. Biol. , vol.577 , pp. 102-116
    • Doerries, K.1
  • 8
    • 5344243135 scopus 로고    scopus 로고
    • The power of pumping together; deconstructing the engine of a DNA replication machine
    • Eichman B.F., Fanning E. The power of pumping together; deconstructing the engine of a DNA replication machine. Cell 2004, 119:3-4.
    • (2004) Cell , vol.119 , pp. 3-4
    • Eichman, B.F.1    Fanning, E.2
  • 9
    • 0015232481 scopus 로고
    • New human papovavirus (B.K.) isolated from urine after renal transplantation
    • Gardner S.D., Field A.M., Coleman D.V., Hulme B. New human papovavirus (B.K.) isolated from urine after renal transplantation. Lancet 1971, 1:1253-1257.
    • (1971) Lancet , vol.1 , pp. 1253-1257
    • Gardner, S.D.1    Field, A.M.2    Coleman, D.V.3    Hulme, B.4
  • 10
    • 33744780692 scopus 로고    scopus 로고
    • Activation of early gene transcription in polyomavirus BK by human immunodeficiency virus type 1 Tat
    • Gorrill T., Feliciano M., Mukerjee R., Sawaya B.E., Khalili K., White M.K. Activation of early gene transcription in polyomavirus BK by human immunodeficiency virus type 1 Tat. J. Gen. Virol. 2006, 87:1557-1566.
    • (2006) J. Gen. Virol. , vol.87 , pp. 1557-1566
    • Gorrill, T.1    Feliciano, M.2    Mukerjee, R.3    Sawaya, B.E.4    Khalili, K.5    White, M.K.6
  • 11
    • 42249096091 scopus 로고    scopus 로고
    • Polyomavirus BK with rearranged noncoding control region emerge in vivo in renal transplant patients and increase viral replication and cytopathology
    • Gosert R., Rinaldo C.H., Funk G.A., Egli A., Ramos E., Drachenberg C.B., Hirsch H.H. Polyomavirus BK with rearranged noncoding control region emerge in vivo in renal transplant patients and increase viral replication and cytopathology. J. Exp. Med. 2008, 205:841-852.
    • (2008) J. Exp. Med. , vol.205 , pp. 841-852
    • Gosert, R.1    Rinaldo, C.H.2    Funk, G.A.3    Egli, A.4    Ramos, E.5    Drachenberg, C.B.6    Hirsch, H.H.7
  • 13
    • 0019985327 scopus 로고
    • The role of BK virus in acute respiratory tract disease and the presence of BKV DNA in tonsils
    • Goudsmit J., Wertheim-van Dillen P., van Strien A., van der Noordaa J. The role of BK virus in acute respiratory tract disease and the presence of BKV DNA in tonsils. J. Med. Virol. 1982, 10:91-99.
    • (1982) J. Med. Virol. , vol.10 , pp. 91-99
    • Goudsmit, J.1    Wertheim-van Dillen, P.2    van Strien, A.3    van der Noordaa, J.4
  • 14
    • 0019812890 scopus 로고
    • The persistence of papovavirus BK DNA sequences in normal human renal tissue
    • Heritage J., Chesters P.M., McCance D.J. The persistence of papovavirus BK DNA sequences in normal human renal tissue. J. Med. Virol. 1981, 8:143-150.
    • (1981) J. Med. Virol. , vol.8 , pp. 143-150
    • Heritage, J.1    Chesters, P.M.2    McCance, D.J.3
  • 15
    • 0014202537 scopus 로고
    • Selective extraction of polyoma DNA from infected mouse cell cultures
    • Hirt B. Selective extraction of polyoma DNA from infected mouse cell cultures. J. Mol. Biol. 1967, 26:365-369.
    • (1967) J. Mol. Biol. , vol.26 , pp. 365-369
    • Hirt, B.1
  • 16
    • 0024556150 scopus 로고
    • Engineering hybrid genes without the use of restriction enzymes: gene splicing by overlap extension
    • Horton R.M., Hunt H.D., Ho S.N., Pullen J.K., Pease L.R. Engineering hybrid genes without the use of restriction enzymes: gene splicing by overlap extension. Gene 1989, 77:61-68.
    • (1989) Gene , vol.77 , pp. 61-68
    • Horton, R.M.1    Hunt, H.D.2    Ho, S.N.3    Pullen, J.K.4    Pease, L.R.5
  • 17
    • 70449123623 scopus 로고    scopus 로고
    • BK virus has tropism for human salivary gland cells in vitro: implications for transmission
    • Jeffers L.K., Madden V., Webster-Cyriaque J. BK virus has tropism for human salivary gland cells in vitro: implications for transmission. Virology 2009, 394:183-193.
    • (2009) Virology , vol.394 , pp. 183-193
    • Jeffers, L.K.1    Madden, V.2    Webster-Cyriaque, J.3
  • 18
    • 0027393759 scopus 로고
    • BK virus antigenic variants: sequence analysis within the capsid VP1 epitope
    • Jin L., Gibson P.E., Knowles W.A., Clewley J.P. BK virus antigenic variants: sequence analysis within the capsid VP1 epitope. J. Med. Virol. 1993, 39:50-56.
    • (1993) J. Med. Virol. , vol.39 , pp. 50-56
    • Jin, L.1    Gibson, P.E.2    Knowles, W.A.3    Clewley, J.P.4
  • 20
    • 0002218308 scopus 로고    scopus 로고
    • The epidemiology of BK virus and the occurence of antigenic and genomic subtypes
    • Wiley-Liss, New York, K. Khalili, G.L. Stoner (Eds.)
    • Knowles W.A. The epidemiology of BK virus and the occurence of antigenic and genomic subtypes. Human Polyomaviruses: Molecular and Clinical Perspectives 2001, Wiley-Liss, New York. K. Khalili, G.L. Stoner (Eds.).
    • (2001) Human Polyomaviruses: Molecular and Clinical Perspectives
    • Knowles, W.A.1
  • 21
    • 33745630722 scopus 로고    scopus 로고
    • Discovery and epidemiology of the human polyomaviruses BK virus (BKV) and JC virus (JCV)
    • Knowles W.A. Discovery and epidemiology of the human polyomaviruses BK virus (BKV) and JC virus (JCV). Adv. Exp. Med. Biol. 2006, 577:19-45.
    • (2006) Adv. Exp. Med. Biol. , vol.577 , pp. 19-45
    • Knowles, W.A.1
  • 22
    • 0032692784 scopus 로고    scopus 로고
    • Prevalence of long-term BK and JC excretion in HIV-infected adults and lack of correlation with serological markers
    • Knowles W.A., Pillay D., Johnson M.A., Hand J.F., Brown D.W. Prevalence of long-term BK and JC excretion in HIV-infected adults and lack of correlation with serological markers. J. Med. Virol. 1999, 59:474-479.
    • (1999) J. Med. Virol. , vol.59 , pp. 474-479
    • Knowles, W.A.1    Pillay, D.2    Johnson, M.A.3    Hand, J.F.4    Brown, D.W.5
  • 23
    • 2942559043 scopus 로고    scopus 로고
    • BKV and SV40 infection of human kidney tubular epithelial cells in vitro
    • Low J., Humes H.D., Szczypka M., Imperiale M. BKV and SV40 infection of human kidney tubular epithelial cells in vitro. Virology 2004, 323:182-188.
    • (2004) Virology , vol.323 , pp. 182-188
    • Low, J.1    Humes, H.D.2    Szczypka, M.3    Imperiale, M.4
  • 24
    • 31144470194 scopus 로고    scopus 로고
    • Identification of gangliosides GD1b and GT1b as receptors for BK virus
    • Low J.A., Magnuson B., Tsai B., Imperiale M.J. Identification of gangliosides GD1b and GT1b as receptors for BK virus. J. Virol. 2006, 80:1361-1366.
    • (2006) J. Virol. , vol.80 , pp. 1361-1366
    • Low, J.A.1    Magnuson, B.2    Tsai, B.3    Imperiale, M.J.4
  • 25
    • 0023783862 scopus 로고
    • Binding of cellular proteins to the regulatory region of BK virus DNA
    • Markowitz R.B., Dynan W.S. Binding of cellular proteins to the regulatory region of BK virus DNA. J. Virol. 1988, 62:3388-3398.
    • (1988) J. Virol. , vol.62 , pp. 3388-3398
    • Markowitz, R.B.1    Dynan, W.S.2
  • 26
    • 0027396830 scopus 로고
    • Incidence of BK virus and JC virus viruria in human immunodeficiency virus-infected and -uninfected subjects
    • Markowitz R.B., Thompson H.C., Mueller J.F., Cohen J.A., Dynan W.S. Incidence of BK virus and JC virus viruria in human immunodeficiency virus-infected and -uninfected subjects. J. Infect. Dis. 1993, 167:13-20.
    • (1993) J. Infect. Dis. , vol.167 , pp. 13-20
    • Markowitz, R.B.1    Thompson, H.C.2    Mueller, J.F.3    Cohen, J.A.4    Dynan, W.S.5
  • 27
    • 23744500860 scopus 로고    scopus 로고
    • Specific and quantitative detection of human polyomaviruses BKV, JCV, and SV40 by real time PCR
    • McNees A.L., White Z.S., Zanwar P., Vilchez R.A., Butel J.S. Specific and quantitative detection of human polyomaviruses BKV, JCV, and SV40 by real time PCR. J. Clin. Virol. 2005, 34:52-62.
    • (2005) J. Clin. Virol. , vol.34 , pp. 52-62
    • McNees, A.L.1    White, Z.S.2    Zanwar, P.3    Vilchez, R.A.4    Butel, J.S.5
  • 28
    • 0029156475 scopus 로고
    • Noncoding control region of naturally occurring BK virus variants: sequence comparison and functional analysis
    • Moens U., Johansen T., Johnsen J.I., Seternes O.M., Traavik T. Noncoding control region of naturally occurring BK virus variants: sequence comparison and functional analysis. Virus Genes 1995, 10:261-275.
    • (1995) Virus Genes , vol.10 , pp. 261-275
    • Moens, U.1    Johansen, T.2    Johnsen, J.I.3    Seternes, O.M.4    Traavik, T.5
  • 29
    • 0002213482 scopus 로고    scopus 로고
    • Molecular biology of BK virus and clinical and basic aspects of BK virus renal infection
    • Wiley-Liss, New York, K. Khalili, G.L. Stoner (Eds.)
    • Moens U., Rekvig O.P. Molecular biology of BK virus and clinical and basic aspects of BK virus renal infection. Human Polyomavirus 2001, Wiley-Liss, New York. K. Khalili, G.L. Stoner (Eds.).
    • (2001) Human Polyomavirus
    • Moens, U.1    Rekvig, O.P.2
  • 30
    • 11344252486 scopus 로고    scopus 로고
    • Polymorphism in the genome of non-passaged human polyomavirus BK: implications for cell tropism and the pathological role of the virus
    • Moens U., Van Ghelue M. Polymorphism in the genome of non-passaged human polyomavirus BK: implications for cell tropism and the pathological role of the virus. Virology 2005, 331:209-231.
    • (2005) Virology , vol.331 , pp. 209-231
    • Moens, U.1    Van Ghelue, M.2
  • 31
    • 0024230570 scopus 로고
    • Do transcriptional enhancers also augment DNA replication?
    • O'Connor D.T., Subramani S. Do transcriptional enhancers also augment DNA replication?. Nucleic Acids Res. 1988, 16:11207-11222.
    • (1988) Nucleic Acids Res. , vol.16 , pp. 11207-11222
    • O'Connor, D.T.1    Subramani, S.2
  • 32
    • 70350469060 scopus 로고    scopus 로고
    • Functional analysis of polyomavirus BK non-coding control region quasispecies from kidney transplant recipients
    • Olsen G.H., Hirsch H.H., Rinaldo C.H. Functional analysis of polyomavirus BK non-coding control region quasispecies from kidney transplant recipients. J. Med. Virol. 2009, 81:1959-1967.
    • (2009) J. Med. Virol. , vol.81 , pp. 1959-1967
    • Olsen, G.H.1    Hirsch, H.H.2    Rinaldo, C.H.3
  • 33
    • 0020625930 scopus 로고
    • Mutational analysis of simian virus 40T antigen: isolation and characterization of mutants with deletions in the T-antigen gene
    • Pipas J.M., Peden K.W., Nathans D. Mutational analysis of simian virus 40T antigen: isolation and characterization of mutants with deletions in the T-antigen gene. Mol. Cell. Biol. 1983, 3:203-213.
    • (1983) Mol. Cell. Biol. , vol.3 , pp. 203-213
    • Pipas, J.M.1    Peden, K.W.2    Nathans, D.3
  • 34
    • 0026092377 scopus 로고
    • Recurring theme of changes in the transcriptional control region of BK virus during adaptation to cell culture
    • Rubinstein R., Schoonakker B.C., Harley E.H. Recurring theme of changes in the transcriptional control region of BK virus during adaptation to cell culture. J. Virol. 1991, 65:1600-1604.
    • (1991) J. Virol. , vol.65 , pp. 1600-1604
    • Rubinstein, R.1    Schoonakker, B.C.2    Harley, E.H.3
  • 35
    • 0018611461 scopus 로고
    • The genome of human papovavirus BKV
    • Seif I., Khoury G., Dhar R. The genome of human papovavirus BKV. Cell 1979, 18:963-977.
    • (1979) Cell , vol.18 , pp. 963-977
    • Seif, I.1    Khoury, G.2    Dhar, R.3
  • 37
    • 0023148560 scopus 로고
    • Nucleotides in the polyomavirus enhancer that control viral transcription and DNA replication
    • Tang W.J., Berger S.L., Triezenberg S.J., Folk W.R. Nucleotides in the polyomavirus enhancer that control viral transcription and DNA replication. Mol. Cell. Biol. 1987, 7:1681-1690.
    • (1987) Mol. Cell. Biol. , vol.7 , pp. 1681-1690
    • Tang, W.J.1    Berger, S.L.2    Triezenberg, S.J.3    Folk, W.R.4
  • 39
    • 23244433559 scopus 로고    scopus 로고
    • Frequent detection of polyomaviruses in stool samples from hospitalized children
    • Vanchiere J.A., Nicome R.K., Greer J.M., Demmler G.J., Butel J.S. Frequent detection of polyomaviruses in stool samples from hospitalized children. J. Infect. Dis. 2005, 192:658-664.
    • (2005) J. Infect. Dis. , vol.192 , pp. 658-664
    • Vanchiere, J.A.1    Nicome, R.K.2    Greer, J.M.3    Demmler, G.J.4    Butel, J.S.5
  • 40
    • 12944250862 scopus 로고    scopus 로고
    • Detection of BK virus and simian virus 40 in the urine of healthy children
    • Vanchiere J.A., White Z.S., Butel J.S. Detection of BK virus and simian virus 40 in the urine of healthy children. J. Med. Virol. 2005, 75:447-454.
    • (2005) J. Med. Virol. , vol.75 , pp. 447-454
    • Vanchiere, J.A.1    White, Z.S.2    Butel, J.S.3
  • 41
    • 0032710971 scopus 로고    scopus 로고
    • Conformational changes in simian virus 40 rearranged regulatory regions: effects of the 21-base-pair promoters and their location
    • Wilderman P.J., Hu B., Woodworth M.E. Conformational changes in simian virus 40 rearranged regulatory regions: effects of the 21-base-pair promoters and their location. J. Virol. 1999, 73:10254-10263.
    • (1999) J. Virol. , vol.73 , pp. 10254-10263
    • Wilderman, P.J.1    Hu, B.2    Woodworth, M.E.3
  • 42
    • 58549118705 scopus 로고    scopus 로고
    • High frequency of polyoma BK virus shedding in the gastrointestinal tract after hematopoietic stem cell transplantation: a prospective and quantitative analysis
    • Wong A.S., Cheng V.C., Yuen K.Y., Kwong Y.L., Leung A.Y. High frequency of polyoma BK virus shedding in the gastrointestinal tract after hematopoietic stem cell transplantation: a prospective and quantitative analysis. Bone Marrow Transplant. 2009, 43:43-47.
    • (2009) Bone Marrow Transplant. , vol.43 , pp. 43-47
    • Wong, A.S.1    Cheng, V.C.2    Yuen, K.Y.3    Kwong, Y.L.4    Leung, A.Y.5
  • 43
    • 0018681489 scopus 로고
    • Comparative study of papovavirus DNA: BKV(MM), BKV(WT) and SV40
    • Yang R.C., Wu R. Comparative study of papovavirus DNA: BKV(MM), BKV(WT) and SV40. Nucleic Acids Res. 1979, 7:651-668.
    • (1979) Nucleic Acids Res. , vol.7 , pp. 651-668
    • Yang, R.C.1    Wu, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.