Polymorphism in the genome of non-passaged human polyomavirus BK: Implications for cell tropism and the pathological role of the virus

Virology

Volumn 331, Issue 2, 2005, Pages 209-231

  Moens, Ugo ^a   Van Ghelue, Marijke ^b  

^a UNIVERSITY OF TROMSØ   (Norway)

^b UNIVERSITY HOSPITAL OF NORTH NORWAY   (Norway)

Author keywords

Agnoprotein; BKV associated diseases; Genomic polymorphism; Human polyomaviruses; Large T antigen; Transcriptional control region; VP1

Indexed keywords

REGULATOR PROTEIN; VIRUS CAPSID ANTIGEN; VIRUS PROTEIN; VIRUS T ANTIGEN;

AUTOIMMUNE DISEASE; DNA POLYMORPHISM; GENE CONTROL; GENETIC TRANSCRIPTION; GENETIC VARIABILITY; HOST; HUMAN; IMMUNE SYSTEM; KIDNEY DISEASE; LIVER DISEASE; LUNG DISEASE; MOLECULAR BIOLOGY; NEOPLASM; NEUROLOGIC DISEASE; NONHUMAN; NUCLEOTIDE SEQUENCE; PATHOGENICITY; POLYOMA VIRUS; POPULATION; PRIORITY JOURNAL; REVIEW; TRANSCRIPTION REGULATION; VIRUS GENOME; VIRUS INFECTION; VIRUS ISOLATION;

DNA, VIRAL; GENOME, VIRAL; HUMANS; POLYMORPHISM, GENETIC; POLYOMAVIRUS; POLYOMAVIRUS INFECTIONS; REGULATORY SEQUENCES, NUCLEIC ACID; TROPISM; TUMOR VIRUS INFECTIONS;

BK POLYOMAVIRUS; MIRIDAE; POLYOMAVIRUS;

EID: 11344252486     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.virol.2004.10.021     Document Type: Review

References (79)

1. H.T. Agostini, G.R. Brubaker, J. Shao, A. Levin, C.F. Ryschkewitsch, W.A. Blattner, and G.L. Stoner BK virus and a new type of JC virus excreted by HIV-1 positive patients in rural Tanzania Arch. Virol. 140 1995 1919 1934
2. W.J. Atwood Cellular receptors for the polyomaviruses K. Khalili G.L. Stoner Human Polyomaviruses. Molecular and Clinical Perspectives 2001 Wiley-Liss, Inc. New York 179 196
3. F.K. Baksh, S.D. Finkelstein, P.A. Swalsky, G.L. Stoner, C.F. Ryschkewitsch, and P. Randhawa Molecular genotyping of BK and JC viruses in human polyomavirus-associated interstitial nephritis after renal transplantation Am. J. Kidney Dis. 38 2001 354 365
4. S. Bendiksen, O.P. Rekvig, M. Van Ghelue, and U. Moens VP1 DNA sequences of JC and BK viruses detected in urine of systemic lupus erythematosus patients reveals no differences from strains expressed in normal individuals J. Gen. Virol. 81 2000 2625 2633
5. S. Bhattacharjee, and T. Chakraborty High reactivation of BK virus variants in Asian Indians with renal disorders and during pregnancy Virus Genes 28 2004 157 168
6. S. Bofill-Mas, S. Pina, and R. Girones Documenting the epidemiologic patterns of polyomaviruses in human populations by studying their presence in urban sewage Appl. Environ. Microbiol. 66 2000 238 245
7. S. Bofill-Mas, M. Formiga-Cruz, P. Clemente-Casares, F. Calafell, and R. Girones Potential transmission of human polyomavirus through the gastrointestinal tract after exposure to virions or viral DNA J. Virol. 75 2001 10290 10299
8. G. Bratt, A.L. Hammarin, M. Grandien, B.G. Hedquist, I. Nennesmo, B. Sundelin, and S. Seregard BK virus as the cause of meningoencephalitis, retinitis and nephritis in a patient with AIDS AIDS 13 1999 1071 1075
9. D. Chang, M. Wang, W.-C. Ou, M.-S. Lee, H.-N. Ho, and R.-T. Tsai Genotypes of human polyomaviruses in urine samples of pregnant women in Taiwan J. Med. Virol. 48 1996 95 101
10. D. Chang, M. Wang, and W.-C. Ou Different genotypes of human polyomaviruses found in patients with autoimmune diseases in Taiwan J. Med. Virol. 48 1996 204 209
11. M. Chatterjee, T.B. Weyandt, and R.J. Frisque Identification of archetype and rearranged forms of BK virus in leukocytes from healthy individuals J. Med. Virol. 60 2000 353 362
12. C.-H. Chen, M.-C. Wen, M. Wang, J.-D. Lian, M.-J. Wu, C.-H. Cheng, K.-H. Shu, and D. Chang A regulatory region rearranged BK virus is associated with tubulointerstitial nephritis in a rejected renal allograft J. Med. Virol. 64 2001 82 88
13. Y. Chen, P.M. Sharp, M. Fowkes, O. Kocher, J.T. Joseph, and I.J. Koralnik Analysis of 15 novel full-length BK virus sequences from three individuals: evidence of a high intra-strain genetic diversity J. Gen. Virol. 85 2004 2651 2663
14. W.H. Colledge, W.D. Richardson, M.D. Edge, and A.E. Smith Extensive mutagenesis of the nuclear location signal of Simian virus 40 large T-antigen Mol. Cell. Biol. 6 1986 4136 4139
15. A. Corallini, M. Tognon, M. Negrini, and G. Barbanti-Brodano Evidence for BK virus as a human tumor virus K. Khalili G.L. Stoner Human Polyomaviruses. Molecular and Clinical Perspectives 2001 Wiley-Liss, Inc. New York 431 460
16. A. Darbinyan, N. Darbinian, M. Safak, S. Radhakrishnan, A. Giordano, and K. Khalili Evidence for dysregulation of cell cycle by human polyomavirus, JCV, late auxiliary protein Oncogene 21 2002 5574 55581
17. G. de Bruyn, and A.P. Limaye BK virus-associated nephropathy in kidney transplant recipients Rev. Med. Virol. 14 2004 193 205
18. A.M. Degener, V. Pietropaolo, C. Di Taranto, L. Jin, F. Ameglio, P. Cordiali-Fei, E. Trento, L. Sinibaldi, and N. Orsi Identification of a new control region in the genome of the DDP strain of BK virus isolated from PBMC J. Med. Virol. 58 1999 413 419
19. L.M. de Silva, P. Bale, J. de Courcy, D. Brown, and W. Knowles Renal failure due to BK virus infection in an immunodeficient child J. Med. Virol. 45 1995 192 196
20. A. Dolei, V. Pietropaolo, E. Gomes, C. Di Taranto, M. Ziccheddu, M.A. Spanu, C. Lavorino, M. Manca, and A.M. Degener Polyomavirus persistence in lymphocytes: prevalence in lymphocytes from blood donors and healthy personnel of a blood transfusion centre J. Gen. Virol. 81 2000 1967 1973
21. K. Dörries Latent and persistent polyomavirus infection K. Khalili G.L. Stoner Human Polyomaviruses. Molecular and Clinical Perspectives 2001 Wiley-Liss, Inc. New York 197 235
22. K. Dörries, E. Vogel, S. Günther, and S. Czub Infection of human polyomaviruses JC and BK in peripheral blood leukocytes from immunocompetent individuals Virology 198 1994 59 70
23. T. Flægstad, A. Sundsfjord, R.R. Arthur, M. Pedersen, T. Traavik, and S. Subramani Amplification and sequencing of the control regions of BK and JC virus from human urine by polymerase chain reaction Virology 180 1991 553 560
24. R. Freund, R.L. Garcea, R. Sahli, and T.L. Benjamin A single-amino-acid substitution in polyomavirus VP1 correlates with plaque size and hemagglutination behaviour J. Virol. 65 1991 350 355
25. S.D. Gardner, A.M. Field, D.V. Coleman, and B. Humle New human papovavirus (B.K.) isolated from urine after renal transplantation Lancet 1 1971 1253 1257
26. K. Hara, Y. Oya, H. Kinoshita, F. Taguchi, and Y. Yogo Sequence reiteration required for the efficient growth of BK virus J. Gen. Virol. 67 1986 2555 2559
27. K.F. Harris, J.B. Christensen, E.H. Radany, and M.J. Imperiale Novel mechanisms of E2F induction by BK virus large-T antigen: requirement of both the pRb-binding and the J domains Mol. Cell. Biol. 18 1998 1746 1757
28. H. Hirsch, and J. Steiger Polyomavirus BK Lancet Infect. Dis. 3 2003 611 623
29. L. Jin, P.E. Gibson, W.A. Knowles, and J.P. Clewley Genomic typing of BK virus in clinical specimens by direct sequencing of polymerase chain reaction products J. Med. Virol. 41 1993 11 17
30. L. Jin, V. Pietropaolo, J.C. Booth, K.H. Ward, and D.W. Brown Prevalence and distribution of BK virus subtypes in healthy people and immunocompromised patients detected by PCR-restriction enzyme analysis Clin. Diagn. Virol. 3 1995 285 295
31. G.E.K. Jørgensen, A.-L. Hammarin, G. Bratt, M. Grandien, T. Flægstad, and J.I. Johnsen Identification of a unique BK virus variant in the CNS of a patient with AIDS J. Med. Virol. 70 2003 14 19
32. D. Kalderon, and A.E. Smith In vitro mutagenesis of a putative DNA binding domain of SV40 large-T Virology 139 1984 109 137
33. C. Kimchi-Sarfaty, M. Arora, Z. Sandalon, A. Oppenheim, and M.M. Gottesman High cloning capacity of in vitro packaged SV40 vectors with no SV40 virus sequences Human Gene Ther. 14 2003 167 177
34. W.A. Knowles The epidemiology of BK virus and the occurrence of antigenic and genomic subtypes K. Khalili G.L. Stoner Human Polyomaviruses. Molecular and Clinical Perspectives 2001 Wiley-Liss. Inc. New York 527 559
35. T. Kupper, U. Stoffels, M. Pawlita, K.F. Burrig, and P. Pfitzer Morphological changes in urothelial cells replicating human polyomavirus BK Cytopathology 4 1993 361 368
36. R.-M. Li, R.B. Mannon, D. Kleiner, M. Tsokos, M. Bynum, A.D. Kirk, and J.B. Kopp BK virus and SV40 co-infection in polyomavirus nephropathy Transplantation 74 2002 1497 1504
37. R.C. Liddington, Y. Yan, J. Moulai, R. Sahli, T.L. Benjamin, and S.C. Harrison Structure of simian virus 40 at 3.8-Å resolution Nature 354 1991 278 284
38. R.-B. Markowitz, B.A. Eaton, M.F. Kubik, D. Latorra, J.A. McGregor, and W.S. Dynan BK virus and JC virus shed during pregnancy have predominantly archetypal regulatory regions J. Virol. 65 1991 4515 4519
39. U. Moens, and O.P. Rekvig Molecular biology of BK virus and clinical aspects of BK virus renal infection K. Khalili G.L. Stoner Human Polyomaviruses. Molecular and Clinical Perspectives 2001 Wiley-Liss, Inc. New York 359 408
40. U. Moens, N. Subramaniam, B. Johansen, T. Johansen, and T. Traavik A steroid hormone response unit in the late leader of the noncoding control region of the human polyomavirus BK confers enhanced host cell permissivity J. Virol. 68 1994 2398 2408
41. U. Moens, T. Johansen, J.I. Johnsen, O.M. Seternes, and T. Traavik Noncoding control region of naturally occurring BK virus variants: sequence comparison and functional analysis Virus Genes 10 1995 261 275
42. U. Moens, O.M. Seternes, B. Johansen, and O.P. Rekvig Mechanisms of transcriptional regulation of cellular genes by SV40 large T- and small t-antigens Virus Genes 15 1997 135 154
43. P. Monini, A. Rotola, D. Di Luca, L. De lellis, E. Chiari, A. Corallini, and A. Cassai DNA rearrangements impairing BK virus productive infection in urinary tract tumors Virology 214 1995 273 279
44. M. Negrini, S. Sabbioni, R.R. Arthur, A. Castagnoli, and G. Barbanti-Brodano Prevalence of the archetypal regulatory region and sequence polymorphisms in nonpassaged BK virus variants J. Virol. 65 1991 5092 5095
45. Y. Orba, H. Sawa, H. Iwata, S. Tanaka, and K. Nagashima Inhibition of virus production in JC virus-infected cells by postinfection RNA interference J. Virol. 78 2004 7270 7273
46. W.-C. Ou, M. Wang, C.-Y. Fung, R.-T. Tsai, P.-C. Chao, T.-H. Hseu, and D. Chang The major capsid protein, VP1, of human JC virus expressed in Escherichia coli is able to self-assemble into a capsid-like particle and deliver exogenous DNA into human kidney cells J. Gen. Virol. 80 1999 39 46
47. V. Pietropaolo, C. Di Taranto, A.M. Degener, L. Jin, L. Sinibaldi, A. Baiocchini, M. Melis, and N. Orsdi Transplacental transmission of human polyomavirus BK J. Med. Virol. 56 1998 372 376
48. P. Priftakis, G. Bogdanovic, M. Kalantari, and T. Dalianis Overrepresentation of point mutations in the Sp1 site of the non-coding control region of BK virus in bone marrow transplanted patients with haemorrhagic cystitis J. Clin. Virol. 21 2001 1 7
49. P. Priftakis, G. Bogdanovic, P. Kokhaei, H. Mellstedt, and T. Dalianis BK virus (BKV) quantification in urine samples of bone marrow transplanted patients is helpful for diagnosis of hemorrhagic cystitis, although wide individual variations exist J. Clin. Virol. 26 2003 71 77
50. S. Radhakrishnan, J. Gordon, L. Del Valle, J. Cui, and K. Khalili Intracellular approach for blocking JC virus gene expression by using RNA interference during viral infection J. Virol. 78 2004 7264 7269
51. P. Randhawa, A. Vats, R. Shapiro, K. Weck, and V. Scantlebury BK virus: discovery, epidemiology, and biology Graft 5 2002 S19 S27
52. P.S. Randhawa, K. Khaleel-Ur-Rehman, P.A. Swalsky, A. Vats, V. Scantlebury, R. Shapiro, and S. Finkelstein DNA sequencing of viral capsid protein VP-1 region in patients with BK virus interstitial nephritis Transplantation 73 2002 1090 1094
53. P. Randhawa, D. Zygmunt, R. Shapiro, A. Vats, K. Weck, P. Swalsky, and S. Finkelstein Viral regulatory region sequence variations in kidney tissue obtained from patients with BK virus nephropathy Kidney Int. 64 2003 743 747
54. M.D. Reploeg, G.A. Storch, and D.B. Clifford BK virus: a clinical review Clin. Infect. Dis. 33 2001 191 202
55. O.P. Rekvig, and U. Moens Polyomavirus BK and autoimmunity to nucleosomes Graft 5 2002 36 45
56. C.H. Rinaldo, T. Traavik, and A. Hey The agnogene of the human polyomavirus BK is expressed J. Virol. 72 1998 6233 6236
57. B.M. Ritchie, S.B. Vaughn, J.S. Leger, G.A. Rich, D.J. Rupiper, G. Forgey, C.B. Greenacre, K.S. Latimer, D. Pesti, R. Campagnoli, and P.D. Lukert Use of an inactivated virus vaccine to control polyomavirus outbreaks in nine flocks of psittacine birds J. Am. Vet. Med. Assoc. 212 1998 685 690
58. S. Rosen, W. Harmon, A.M. Krensky, P.J. Edelson, B.L. Padgett, B.W. Grinell, M.J. Rubino, and D.L. Walker Tubulo-interstitial nephritis associated with polymavirus (BK type) infection N. Engl. J. Med. 308 1983 1192 1196
59. R. Rubinstein, N. Pare, and E.H. Harley Structure and function of the transcriptional control region of nonpassaged BK virus J. Virol. 61 1987 1747 1750
60. R. Rubinstein, B.C.A. Schoonakker, and E.H. Harley Recurring theme of changes in the transcriptional control region of BK virus during adaptation to cell culture J. Virol. 65 1991 1600 1604
61. J.E. Rutila, M.J. Imperiale, and W.W. Brockman Replication and transformation functions of in vitro-generated Simian virus 40 large T antigen mutants J. Virol. 58 1986 526 535
62. H.M. Schätzl, E. Sieger, G. Jäger, H. Nitschko, L. Bader, G. Ruckdeschel, and G. Jäger Detection by PCR of human polyomaviruses BK and JC in immunocompromised individuals and partial sequencing of control regions J. Med. Virol. 42 1994 138 145
63. B. Schweighardt, and W.J. Atwood Glial cells as targets of viral infection in the human central nervous system B. Castellano Lopez M. Nieto-Sampedro Prog. Brain Res. vol. 321 2001 Elsevier Amsterdam 731 745
64. I. Seif, G. Khoury, and R. Dhar The genome of human papovavirus BKV Cell 18 1979 963 977
65. R.D. Smith, J.H. Galla, K. Skahan, P. Anderson, C.C. Linnemann, G.S. Ault, C.F. Ryschkewitsch, and G.L. Stoner Tubulointerstitial nephritis due to a mutant polyomavirus BK virus strain, BKV (Cin), causing end-stage renal disease J. Clin. Microbiol. 36 1998 1660 1665
66. G.L. Stoner, and R. Hübner The human polyomaviruses: past, present, and future K. Khalili G.L. Stoner Human Polyomaviruses. Molecular and Clinical Perspectives 2001 Wiley-Liss, Inc. New York 611 663
67. G.L. Stoner, R. Alappan, D.V. Jobes, C.F. Ryschkewitsch, and M.L. Landry BK virus regulatory rearrangements in brain and cerebrospinal fluid from a leukaemia patient with tubulointerstitial nephritis and meningoencephalitis Am. J. Kidney Dis. 39 2002 1102 1112
68. C. Sugimoto, K. Hara, F. Taguchi, and Y. Yogo Growth efficiency of naturally occurring BK virus variants in vivo and in vitro J. Virol. 63 1989 3195 3199
69. C. Sugimoto, K. Hara, F. Taguchi, and Y. Yogo Regulatory DNA sequence conserved in the course of BK virus evolution J. Mol. Evol. 31 1990 485 492
70. A. Sundsfjord, T. Johansen, T. Flægstad, U. Moens, P. Villand, S. Subramani, and T. Traavik At least two types of control regions can be found among naturally occurring BK virus strains J. Virol. 64 1990 3864 3871
71. A. Sundsfjord, A.R. Spein, E. Lucht, T. Flægstad, O.M. Seternes, and T. Traavik Detection of BK virus DNA in nasopharyngeal aspirates from children with respiratory infections but not in saliva from immunodeficient and immunocompetent adult patients J. Clin. Microbiol. 32 1994 1390 1394
72. A. Sundsfjord, T. Flægstad, R. Flø, A.R. Spein, M. Pedersen, H. Permin, J. Julsrud, and T. Traavik BK and JC viruses in human immunodeficiency virus type 1-infected persons: prevalence, excretion, viremia, and viral regulatory regions J. Infect. Dis. 169 1994 485 490
73. A. Sundsfjord, A. Osei, H. Rosenqvist, M. Van Ghelue, Y. Silsand, H.-J. Haga, O.P. Rekvig, and U. Moens BK and JC viruses in patients with systemic lupus erythematosus: prevalent and persistent BK viruria, sequence stability of the viral regulatory regions, and nondetectable viremia J. Infect. Dis. 180 1999 1 9
74. T. Takasaka, N. Goya, T. Tokumoto, K. Tanabe, H. Toma, Y. Ogawa, S. Hokama, A. Momose, T. Funyu, T. Fujioka, S. Omori, H. Akiyama, Q. Chen, H.-Y. Zheng, N. Ohta, T. Kitamura, and Y. Yogo Subtypes of BK virus prevalent in Japan and variation in their transcriptional control region J. Gen. Virol. 85 2004 2821 2827
75. J.E. Tavis, D.L. Walker, S.D. Gardner, and R.J. Frisque Nucleotide sequence of the human polyomavirus AS virus, an antigenic variant of BK virus J. Virol. 63 1989 901 911
76. R.-T. Tsai, M. Wang, W.-C. Ou, Y.-L. Lee, S.-Y. Li, C.-Y. Fung, Y.-L. Huang, T.-Y. Tzeng, Y. Chen, and D. Chang Incidence of JC viruria is higher than that of BK viruria in Taiwan J. Med. Virol. 52 1997 253 257
77. A. Touzé, L. Bousarghin, C. Ster, A.-L. Combita, P. Roingeard, and P. Coursaget Gene transfer using human polyomavirus BK virus-like particles expressed in insect cells J. Gen. Virol. 82 2001 3005 3009
78. S. Watanabe, and K. Yoshiike Evolutionary changes of transcriptional control region in a minute-plaque viable deletion mutant of BK virus J. Virol. 59 1986 260 266
79. M.K. White, and K. Khalili Polyomaviruses and human cancer: molecular mechanisms underlying patterns of tumorigenesis Virology 324 2004 1 16