Difference between random and imprinted X inactivation in common voles

Chromosoma

Volumn 119, Issue 5, 2010, Pages 541-552

  Dementyeva, Elena V ^a   Shevchenko, Alexander I ^a   Anopriyenko, Olga V ^a   Mazurok, Nina A ^a   Elisaphenko, Eugeny A ^a   Nesterova, Tatyana B ^b   Brockdorff, Neil ^b   Zakian, Suren M ^a  

^a INSTITUTE OF CYTOLOGY AND GENETICS   (Russian Federation)

^b UNIVERSITY OF OXFORD   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL CELL; ANIMAL TISSUE; ARTICLE; CONTROLLED STUDY; DNA METHYLATION; DNA SYNTHESIS; EMBRYO; EMBRYO DEVELOPMENT; FLUORESCENCE IN SITU HYBRIDIZATION; GENE EXPRESSION; GENE FREQUENCY; GENE INACTIVATION; GENE MAPPING; GENE SEQUENCE; HUMAN; MICROTUS ARVALIS; MICROTUS KIRGISORUM; MICROTUS ROSSIAEMERIDIONALIS; MICROTUS TRANSCASPICUS; NONHUMAN; NUCLEOTIDE SEQUENCE; RAT; SEQUENCE HOMOLOGY; SPECIES DIFFERENCE; VOLE; X CHROMOSOME; X CHROMOSOME INACTIVATION; ANIMAL; ARVICOLINAE; CHROMOSOME MAP; FEMALE; GENETICS; GENOME IMPRINTING; MALE; METABOLISM; MURIDAE; X CHROMOSOMAL INHERITANCE;

ANIMALS; ARVICOLINAE; CHROMOSOME MAPPING; DNA METHYLATION; FEMALE; GENE EXPRESSION; GENES, X-LINKED; GENOMIC IMPRINTING; HUMANS; IN SITU HYBRIDIZATION, FLUORESCENCE; MALE; MURIDAE; REPRESSOR PROTEINS; RNA, UNTRANSLATED; X CHROMOSOME; X CHROMOSOME INACTIVATION; RNA, LONG NONCODING;

EUTHERIA; MAMMALIA; MICROTUS ARVALIS;

LONG UNTRANSLATED RNA; REPRESSOR PROTEIN; UNTRANSLATED RNA; XIST NON-CODING RNA;

EID: 77957676285     PISSN: 00095915     EISSN: 14320886     Source Type: Journal    
DOI: 10.1007/s00412-010-0277-6     Document Type: Article

References (65)

1. PM Borodin OV Alblina SM Zakiian TN Nesterova MN Meier 1991 Morphology and behavior of the sex chromosomes in meiosis in four vole species of the genus Microtus Genetika 27 1059 1065 1:STN:280:DyaK387ivVOntA%3D%3D 1773934
2. N Brockdorff 2002 X-chromosome inactivation: closing in on proteins that bind Xist RNA Trends Genet 18 352 358 1:CAS:528:DC%2BD38XlsVOlsrg%3D 10.1016/S0168-9525(02)02717-8 12127775 (Pubitemid 34804447)
3. CJ Brown JM Greally 2003 A stain upon the silence: genes escaping X inactivation Trends Genet 19 432 438 1:CAS:528:DC%2BD3sXlvFOrtrg%3D 10.1016/S0168-9525(03)00177-X 12902161 (Pubitemid 36930026)
4. CJ Brown A Ballabio JL Rupert RG Lafreniere M Grompe R Tonlorenzi HF Willard 1991 A gene from the region of the human X inactivation centre is expressed exclusively from the inactive X chromosome Nature 349 38 44 1:CAS:528:DyaK3MXit1amsLw%3D 10.1038/349038a0 1985261
5. L Carrel HF Willard 2005 X-inactivation profile reveals extensive variability in X-linked gene expression in females Nature 434 400 404 1:CAS:528:DC%2BD2MXit1yqsrY%3D 10.1038/nature03479 15772666 (Pubitemid 40469185)
6. L Carrel CM Clemson JM Dunn AP Miller PA Hunt JB Lawrence HF Willard 1996 X inactivation analysis and DNA methylation studies of the ubiquitin activating enzyme E1 and PCTAIRE-1 genes in human and mouse Hum Mol Genet 5 391 401 1:CAS:528:DyaK28XhsFyntb0%3D 10.1093/hmg/5.3.391 8852665 (Pubitemid 26069584)
7. L Carrel AA Cottle KC Goglin HF Willard 1999 A first-generation X-inactivation profile of the human X chromosome Proc Natl Acad Sci U S A 96 14440 14444 1:CAS:528:DyaK1MXnvFKksr8%3D 10.1073/pnas.96.25.14440 10588724 (Pubitemid 30000669)
8. EV Dementyeva AI Shevchenko SM Zakian 2009 X-chromosome upregulation and inactivation: two sides of the dosage compensation mechanism in mammals BioEssays 31 21 28 10.1002/bies.080149 19153998
9. CM Disteche 1995 Escape from X inactivation in human and mouse Trends Genet 11 17 22 1:CAS:528:DyaK2MXjtFGjtbs%3D 10.1016/S0168-9525(00)88981-7 7900190
10. CM Disteche 1999 Escapees on the X chromosome Proc Natl Acad Sci U S A 96 14180 14182 1:CAS:528:DyaK1MXnvFKltrY%3D 10.1073/pnas.96.25.14180 10588671 (Pubitemid 30000616)
11. CM Disteche MB Dinulos MT Bassi RW Elliott EI Rugarli 1998 Mapping of the murine tbl1 gene reveals a new rearrangement between mouse and human X Chromosomes Mamm Genome 9 1062 1064 1:CAS:528:DyaK1MXhtVSlt7s%3D 10.1007/s003359900926 9880679 (Pubitemid 29030915)
12. CM Disteche GN Filippova KD Tsuchiya 2002 Escape from X inactivation Cytogenet Genome Res 99 36 43 1:STN:280:DC%2BD3szms1Smug%3D%3D 10.1159/000071572 12900543 (Pubitemid 37467822)
13. SM Duthie TB Nesterova EJ Formstone AM Keohane BM Turner SM Zakian N Brockdorff 1999 Xist RNA exhibits a banded localization on the inactive X chromosome and is excluded from autosomal material in cis Hum Mol Genet 8 195 204 1:CAS:528:DyaK1MXht12isL0%3D 10.1093/hmg/8.2.195 9931327 (Pubitemid 29054261)
14. EA Elisaphenko TB Nesterova SM Duthie OV Ruldugina IB Rogozin N Brockdorff SM Zakian 1998 Repetitive DNA sequences in the common vole: cloning, characterization and chromosome localization of two novel complex repeats MS3 and MS4 from the genome of the East European vole Microtus rossiaemeridionalis Chromosome Res 6 351 360 1:CAS:528:DyaK1MXhs1Sj 10.1023/A:1009284031287 9872664 (Pubitemid 28521753)
15. JA Fantes K Oghene S Boyle S Danes JM Fletcher EA Bruford K Williamson A Seawright A Schedl I Hanson, et al. 1995 A high-resolution integrated physical, cytogenetic, and genetic map of human chromosome 11: distal p13 to proximal p15.1 Genomics 25 447 461 1:CAS:528:DyaK2MXjvV2hsrg%3D 10.1016/0888-7543(95) 80045-N 7789978
16. D Garrick JA Sharpe R Arkell L Dobbie AJ Smith WG Wood DR Higgs RJ Gibbons 2006 Loss of Atrx affects trophoblast development and the pattern of X-inactivation in extraembryonic tissues PLoS Genet 2 e58 10.1371/journal.pgen. 0020058 16628246
17. SL Gilbert PA Sharp 1999 Promoter-specific hypoacetylation of X-inactivated genes Proc Natl Acad Sci U S A 96 13825 13830 1:CAS:528: DyaK1MXns1Oqt7Y%3D 10.1073/pnas.96.24.13825 10570157
18. T Goto E Wright M Monk 1997 Paternal X-chromosome inactivation in human trophoblastic cells Mol Hum Reprod 3 77 80 1:CAS:528:DyaK2sXhvVeisb8%3D 10.1093/molehr/3.1.77 9239711
19. M Grant M Zuccotti M Monk 1992 Methylation of CpG sites of two X-linked genes coincides with X-inactivation in the female mouse embryo but not in the germ line Nat Genet 2 161 166 1:CAS:528:DyaK38XmsVKmsbw%3D 10.1038/ng1092-161 1303266
20. JA Graves 1995 The origin and function of the mammalian Y chromosome and Y-borne genes-an evolving understanding BioEssays 17 311 320 1:STN:280:DyaK2M3mtVehsA%3D%3D 10.1002/bies.950170407 7741724
21. JA Graves CM Disteche R Toder 1998 Gene dosage in the evolution and function of mammalian sex chromosomes Cytogenet Cell Genet 80 94 103 1:CAS:528:DyaK1cXltFCku7g%3D 10.1159/000014963 9678341
22. A Greenfield L Carrel D Pennisi C Philippe N Quaderi P Siggers K Steiner PP Tam AP Monaco HF Willard P Koopman 1998 The UTX gene escapes X inactivation in mice and humans Hum Mol Genet 7 737 742 1:CAS:528:DyaK1cXisVCisbc%3D 10.1093/hmg/7.4.737 9499428 (Pubitemid 28152273)
23. EV Grigor'eva AI Shevchenko NA Mazurok EA Elisaphenko AI Zhelezova AG Shilov PA Dyban AP Dyban EM Noniashvili SY Slobodyanyuk TB Nesterova N Brockdorff SM Zakian 2009 FGF4 independent derivation of trophoblast stem cells from the common vole PLoS One 4 e7161 10.1371/journal.pone.0007161 19777059
24. AK Hadjantonakis LL Cox PP Tam A Nagy 2001 An X-linked GFP transgene reveals unexpected paternal X-chromosome activity in trophoblastic giant cells of the mouse placenta Genesis 29 133 140 1:CAS:528:DC%2BD3MXivFGmtb8%3D 10.1002/gene.1016 11252054 (Pubitemid 32260227)
25. E Heard 2005 Delving into the diversity of facultative heterochromatin: the epigenetics of the inactive X chromosome Curr Opin Genet Dev 15 482 489 1:CAS:528:DC%2BD2MXpvFentbY%3D 10.1016/j.gde.2005.08.009 16107314 (Pubitemid 41262403)
26. E Heard CM Disteche 2006 Dosage compensation in mammals: fine-tuning the expression of the X chromosome Genes Dev 20 1848 1867 1:CAS:528: DC%2BD28XnsVyjtrk%3D 10.1101/gad.1422906 16847345 (Pubitemid 44079323)
27. E Heard P Clerc P Avner 1997 X-chromosome inactivation in mammals Annu Rev Genet 31 571 610 1:CAS:528:DyaK1cXhtlGlsQ%3D%3D 10.1146/annurev.genet.31.1. 571 9442908 (Pubitemid 28023720)
28. KD Huynh JT Lee 2003 Inheritance of a pre-inactivated paternal X chromosome in early mouse embryos Nature 426 857 862 1:CAS:528: DC%2BD3sXpvVGmtb0%3D 10.1038/nature02222 14661031 (Pubitemid 38056873)
29. K Jegalian DC Page 1998 A proposed path by which genes common to mammalian X and Y chromosomes evolve to become X inactivated Nature 394 776 780 1:CAS:528:DyaK1cXlslegs74%3D 10.1038/29522 9723615 (Pubitemid 28391640)
30. CM Johnston FL Lovell DA Leongamornlert BE Stranger ET Dermitzakis MT Ross 2008 Large-scale population study of human cell lines indicates that dosage compensation is virtually complete PLoS Genet 4 e9 10.1371/journal.pgen.0040009 18208332 (Pubitemid 351230877)
31. PG Kratzer VM Chapman H Lambert RE Evans RM Liskay 1983 Differences in the DNA of the inactive X chromosomes of fetal and extraembryonic tissues of mice Cell 33 37 42 1:CAS:528:DyaL3sXktlKnur4%3D 10.1016/0092-8674(83)90332-X 6678611
32. R Krumlauf VM Chapman RE Hammer R Brinster SM Tilghman 1986 Differential expression of alpha-fetoprotein genes on the inactive X chromosome in extraembryonic and somatic tissues of a transgenic mouse line Nature 319 224 226 1:CAS:528:DyaL28XhtVensLg%3D 10.1038/319224a0 2418359
33. BT Lahn DC Page 1999 Four evolutionary strata on the human X chromosome Science 286 964 967 1:CAS:528:DyaK1MXntFaqtrk%3D 10.1126/science.286.5441.964 10542153
34. H Lin V Gupta MD Vermilyea F Falciani JT Lee LP O'Neill BM Turner 2007 Dosage compensation in the mouse balances up-regulation and silencing of X-linked genes PLoS Biol 5 e326 10.1371/journal.pbio.0050326 18076287 (Pubitemid 351181195)
35. W Mak TB Nesterova M de Napoles R Appanah S Yamanaka AP Otte N Brockdorff 2004 Reactivation of the paternal X chromosome in early mouse embryos Science 303 666 669 1:CAS:528:DC%2BD2cXmvVKmtw%3D%3D 10.1126/science.1092674 14752160 (Pubitemid 38141631)
36. MR Matarazzo M Cuccurese M Strazzullo M Vacca A Curci MG Miano M Cocchia G Mercadante A Torino M D'Urso A Ciccodicola M D'Esposito 1999 Human and mouse SYBL1 gene structure and expression Gene 240 233 238 1:CAS:528: DyaK1MXntlSmu70%3D 10.1016/S0378-1119(99)00375-3 10564831 (Pubitemid 29519980)
37. MR Matarazzo ML De Bonis RI Gregory M Vacca RS Hansen G Mercadante M D'Urso R Feil M D'Esposito 2002 Allelic inactivation of the pseudoautosomal gene SYBL1 is controlled by epigenetic mechanisms common to the X and Y chromosomes Hum Mol Genet 11 3191 3198 1:CAS:528:DC%2BD38XptlGgtrY%3D 10.1093/hmg/11.25.3191 12444103
38. NA Mazurok NV Rubtsova AA Isaenko ME Pavlova SY Slobodyanyuk TB Nesterova SM Zakian 2001 Comparative chromosome and mitochondrial DNA analyses and phylogenetic relationships within common voles (Microtus, Arvicolidae) Chromosome Res 9 107 120 1:CAS:528:DC%2BD3MXislaqtb4%3D 10.1023/A:1009226918924 11321366 (Pubitemid 32273186)
39. WS Modi 1993 Heterogeneity in the concerted evolution process of a tandem satellite array in meadow mice (Microtus) J Mol Evol 37 48 56 1:CAS:528:DyaK3sXkvFaju7c%3D 10.1007/BF00170461 8360918
40. M Monk M Boubelik S Lehnert 1987 Temporal and regional changes in DNA methylation in the embryonic, extraembryonic and germ cell lineages during mouse embryo development Development 99 371 382 1:CAS:528:DyaL2sXhsFekt70%3D 3653008
41. TB Nesterova NA Mazurok NM Matveeva AG Shilov EI Yantsen EK Ginsburg SJ Goss SM Zakian 1994 Demonstration of the X-linkage and order to the genes GLA, G6PD, HPRT, and PGK in two vole species of the genus Microtus Cytogenet Cell Genet 65 250 255 1:CAS:528:DyaK2cXlslWks7k%3D 10.1159/000133641 8258299
42. TB Nesterova SM Duthie NA Mazurok AA Isaenko NV Rubtsova SM Zakian N Brockdorff 1998 Comparative mapping of X chromosomes in vole species of the genus Microtus Chromosome Res 6 41 48 1:CAS:528:DyaK1cXhsFSnsbw%3D 10.1023/A:1009266324602 9510509 (Pubitemid 28065827)
43. DK Nguyen CM Disteche 2006 Dosage compensation of the active X chromosome in mammals Nat Genet 38 47 53 1:CAS:528:DC%2BD2MXhtlCmtrzM 10.1038/ng1705 16341221 (Pubitemid 43011881)
44. DP Norris D Patel GF Kay GD Penny N Brockdorff SA Sheardown S Rastan 1994 Evidence that random and imprinted Xist expression is controlled by preemptive methylation Cell 77 41 51 1:CAS:528:DyaK2cXktVansrw%3D 10.1016/0092-8674(94) 90233-X 8156596 (Pubitemid 24184686)
45. Ohno S (1967) Sex chromosomes and sex-linked genes. Springer, Berlin
46. I Okamoto AP Otte CD Allis D Reinberg E Heard 2004 Epigenetic dynamics of imprinted X inactivation during early mouse development Science 303 644 649 1:CAS:528:DC%2BD2cXmvVKnug%3D%3D 10.1126/science.1092727 14671313 (Pubitemid 38141624)
47. S Palmer J Perry D Kipling A Ashworth 1997 A gene spans the pseudoautosomal boundary in mice Proc Natl Acad Sci U S A 94 12030 12035 1:CAS:528:DyaK2sXntFSmsbs%3D 10.1073/pnas.94.22.12030 9342357 (Pubitemid 27467837)
48. C Patrat I Okamoto P Diabangouaya V Vialon P Le Baccon J Chow E Heard 2009 Dynamic changes in paternal X-chromosome activity during imprinted X-chromosome inactivation in mice Proc Natl Acad Sci U S A 106 5198 5203 1:CAS:528:DC%2BD1MXksVert7g%3D 10.1073/pnas.0810683106 19273861
49. GD Penny GF Kay SA Sheardown S Rastan N Brockdorff 1996 Requirement for Xist in X chromosome inactivation Nature 379 131 137 1:CAS:528: DyaK28Xktl2lsg%3D%3D 10.1038/379131a0 8538762 (Pubitemid 26020194)
50. J Perry S Palmer A Gabriel A Ashworth 2001 A short pseudoautosomal region in laboratory mice Genome Res 11 1826 1832 1:CAS:528:DC%2BD3MXotlajurw%3D 11691846
51. K Plath D Talbot KM Hamer AP Otte TP Yang R Jaenisch B Panning 2004 Developmentally regulated alterations in polycomb repressive complex 1 proteins on the inactive X chromosome J Cell Biol 167 1025 1035 1:CAS:528:DC%2BD2MXmtl2r 10.1083/jcb.200409026 15596546 (Pubitemid 40066619)
52. W Reik F Santos K Mitsuya H Morgan W Dean 2003 Epigenetic asymmetry in the mammalian zygote and early embryo: relationship to lineage commitment? Philos Trans R Soc Lond B Biol Sci 358 1403 1409 1:CAS:528:DC%2BD3sXos1Cktrw%3D 10.1098/rstb.2003.1326 14511488 (Pubitemid 37053990)
53. CL Rodriguez Delgado PD Waters C Gilbert TJ Robinson JA Graves 2009 Physical mapping of the elephant X chromosome: conservation of gene order over 105 million years Chromosome Res 17 917 926 1:CAS:528:DC%2BD1MXhtl2ksL3I 10.1007/s10577-009-9079-1
54. MT Ross DV Grafham AJ Coffey, et al. 2005 The DNA sequence of the human X chromosome Nature 434 325 337 1:CAS:528:DC%2BD2MXit1yqsrg%3D 10.1038/nature03440 15772651 (Pubitemid 40469169)
55. NB Rubtsov NV Rubtsova OV Anopriyenko TV Karamysheva AI Shevchenko NA Mazurok TB Nesterova SM Zakian 2002 Reorganization of the X chromosome in voles of the genus Microtus Cytogenet Genome Res 99 323 329 1:CAS:528: DC%2BD3sXmtVKlu7c%3D 10.1159/000071611 12900582 (Pubitemid 37467861)
56. T Sado MH Fenner SS Tan P Tam T Shioda E Li 2000 X inactivation in the mouse embryo deficient for Dnmt1: distinct effect of hypomethylation on imprinted and random X inactivation Dev Biol 225 294 303 1:CAS:528: DC%2BD3cXmtlOrsbs%3D 10.1006/dbio.2000.9823 10985851
57. GB Sharman 1971 Late DNA replication in the paternally derived X chromosome of female kangaroos Nature 230 231 232 1:STN:280:DyaE3M7js1GhtA%3D%3D 10.1038/230231a0 4926712
58. AI Shevchenko SV Pavlova EV Dement'eva DV Golubeva SM Zakiian 2006 Chromatin modifications during X-chromosome inactivation in female mammals Genetika 42 1225 1234 1:STN:280:DC%2BD28nmsFagsQ%3D%3D 17100090
59. AI Shevchenko VV Demina NA Mazurok AI Zhelezova Ia R Efremov G Shilov AI Shevela AV Belevantseva VV Vlasov SM Zakiian 2008 Extraembryonic endoderm stem cell lines from common voles of the genus Microtus Genetika 44 1477 1485 1:STN:280:DC%2BD1M%2Fms1Wgtg%3D%3D 19137730
60. AI Shevchenko SV Pavlova EV Dementyeva SM Zakian 2009 Mosaic heterochromatin of the inactive X chromosome in vole Microtus rossiaemeridionalis Mamm Genome 20 644 653 10.1007/s00335-009-9201-x 19629595
61. J Singer-Sam V Chapman JM LeBon AD Riggs 1992 Parental imprinting studied by allele-specific primer extension after PCR: paternal X chromosome-linked genes are transcribed prior to preferential paternal X chromosome inactivation Proc Natl Acad Sci U S A 89 10469 10473 1:CAS:528:DyaK3sXhslChtg%3D%3D 10.1073/pnas.89.21.10469 1279680
62. KD Tsuchiya HF Willard 2000 Chromosomal domains and escape from X inactivation: comparative X inactivation analysis in mouse and human Mamm Genome 11 849 854 1:CAS:528:DC%2BD3cXnsleitb8%3D 10.1007/s003350010175 11003698
63. J Wang J Mager Y Chen E Schneider JC Cross A Nagy T Magnuson 2001 Imprinted X inactivation maintained by a mouse Polycomb group gene Nat Genet 28 371 375 1:CAS:528:DC%2BD3MXlslels7Y%3D 10.1038/ng574 11479595 (Pubitemid 32702428)
64. SA Wilcox JM Watson JA Spencer JA Graves 1996 Comparative mapping identifies the fusion point of an ancient mammalian X-autosomal rearrangement Genomics 35 66 70 1:CAS:528:DyaK28Xkt12qs7c%3D 10.1006/geno.1996.0323 8661105 (Pubitemid 26236152)
65. ZC Yen IM Meyer S Karalic CJ Brown 2007 A cross-species comparison of X-chromosome inactivation in Eutheria Genomics 90 453 463 1:CAS:528: DC%2BD2sXhtVKrur%2FO 10.1016/j.ygeno.2007.07.002 17728098 (Pubitemid 47404802)