Analysis of genetic diversity in flowering dogwood natural stands using microsatellites: The effects of dogwood anthracnose

Genetica

Volumn 138, Issue 9, 2010, Pages 1047-1057

  Hadziabdic, D ^a   Fitzpatrick, B M ^a   Wang, X ^b   Wadl, P A ^a   Rinehart, T A ^c   Ownley, B H ^a   Windham, M T ^a   Trigiano, R N ^a  

^a UNIVERSITY OF TENNESSEE   (United States)

^b TEXAS A AND M UNIVERSITY   (United States)

^c AGRICULTURAL RESEARCH SERVICE   (United States)

Author keywords

Cornus florida; Dogwood anthracnose; Genetic diversity; Microsatellites; Mortality; Native dogwood populations

Indexed keywords

MICROSATELLITE DNA; PLANT DNA;

ARTICLE; CORNUS; GENETIC VARIABILITY; GENETICS; METABOLISM; MICROBIOLOGY; MULTIGENE FAMILY; PLANT DISEASE; PLANT GENE; POPULATION DENSITY; POPULATION GENETICS; UNITED STATES;

CORNUS; DNA, PLANT; GENES, PLANT; GENETIC VARIATION; GENETICS, POPULATION; MICROSATELLITE REPEATS; MULTIGENE FAMILY; PLANT DISEASES; POPULATION DENSITY; UNITED STATES;

CORNUS; CORNUS FLORIDA;

EID: 77957377820     PISSN: 00166707     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10709-010-9490-8     Document Type: Article

References (74)

1. Amos W, Hoffman JI, Frodsham A, Zhang L, Best S, Hill VS (2007) Automated binning of microsatellite alleles: problems and solutions. Mol Ecol Notes 7: 10-14.
2. Bachtrog D, Agis M, Imhof M, Schlotterer C (2000) Microsatellite variability differs between dinucleotide repeat motifs-evidence from Drosophila melanogaster. Mol Biol Evol 17: 1277-1285.
3. Becker DA, Brittingham MC, Goguen CB (2008) Effects of hemlock woolly adelgid on breeding birds at Fort Indiantown Gap, Pennsylvania. Northeast Nat 15: 227-240.
4. Blair RM, Alcaniz R, Harrell A (1983) Shade intensity influences the nutrient quality and digestibility of southern deer browse leaves. J Range Manage 36: 257-264.
5. Bohonak AJ (2002) IBD (Isolation by distance): a program for analyses of isolation by distance. J Hered 93: 153-154.
6. Brasier CM (2000) Intercontinental spread and continuing evolution of the Dutch elm disease pathogens. In: Dunn CP (ed) The elms: breeding, conservation and disease management. Kluwer Academic Publishers, Boston, pp 61-72.
7. Chakraborty R, Nei M (1977) Bottleneck effects on average heterozygosity and genetic distance with the stepwise mutation model. Evolution 31: 347-356.
8. Chellemi DO, Britton KO (1992) Influence of canopy microclimate on incidence and severity of dogwood anthracnose. Can J Bot 70: 1093-1096.
9. Chellemi DO, Britton KO, Swank WT (1992) Influence of site factors on dogwood anthracnose in the Nantahala mountain range of western North Carolina. Plant Dis 76: 915-918.
10. Crowl TA, Crist TO, Parmenter RR, Belovsky G, Lugo AE (2008) The spread of invasive species and infectious disease as drivers of ecosystem change. Front Ecol Environ 6: 238-246.
11. Daughtrey ML, Hibben CR (1994) Dogwood anthracnose: a new disease threatens two native Cornus species. Annu Rev Phytopathol 32: 61-73.
12. El Mousadik A, Petit RJ (1996) High level of genetic differentiation for allelic richness among populations of the argan tree [Argania spinosa (L.) Skeels] endemic to Morocco. Theor Appl Genet 92: 832-839.
13. Elliott KJ, Swank WT (2008) Long-term changes in forest composition and diversity following early logging (1919-1923) and the decline of American chestnut (Castanea dentata). Plant Ecol 197: 155-172.
14. Eschtruth AK, Battles JJ (2008) Deer herbivory alerts forest response to canopy decline caused by an exotic insect pest. Ecol Appl 18: 360-376.
15. Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software structure: a simulation study. Mol Ecol 14: 2611-2620.
16. Excoffier L, Smouse PE, Quattro JM (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131: 479-491.
17. Excoffier L, Laval G, Schneider S (2005) Arlequin ver. 3. 0: an integrated software package for population genetics data analysis. Evol Bioinform Online 1: 47-50.
18. Fischer M, Matthies D (1998) Effects of population size on performance in the rare plant Gentianella germanica. J Ecol 86: 195-204.
19. Fontanella FM, Feldman CR, Siddall ME, Burbrink FT (2007) Phylogeography of Diadophis punctatus: extensive lineage diversity and repeated patterns of historical demography in a trans-continental snake. Mol Phylogenet Evol 46: 1049-1070.
20. Hall B, Motzkin G, Foster DR, Syfert M, Burk J (2002) Three hundred years of forest and land-use change in Massachusetts, USA. J Biogeogr 29: 1319-1335.
21. Halls LK, Epps EA (1969) Browse quality influenced by tree overstory in the South. J Wildl Manage 33: 1028-1031.
22. Hamrick JL (2004) Response of forest trees to global environmental changes. For Ecol Manage 197: 323-335.
23. Hamrick JL, Godt MJW (1989) Allozyme diversity in plant species. In: Brown HD, Clegg MT, Kahler AL, Weir BS (eds) Plant population genetics, breeding and genetic resources. Sinauer Associates, Sunderland, Massachusetts, pp 43-63.
24. Hannah PR (1993) Composition and development of two Appalachian hardwood stands in North Carolina. J Elisha Mitchell Sci Soc 109: 87-98.
25. Hartl DL, Clark AG (1997) Principles of population genetics, 3rd edn. Sinauer Associates, Sunderland, MA.
26. Havill NP, Montgomery ME, Yu G, Shiyake S, Caccone A (2006) Mitochondrial DNA from hemlock woolly adelgid (Hemiptera: Adelgidae) suggests cryptic speciation and pinpoints the source of the introduction to eastern North America. Ann Entomol SocAm 99: 195-203.
27. Hawley DM, Hanley D, Dhondt AA, Lovette IJ (2006) Molecular evidence for a founder effect in invasive house finch (Carpodacus mexicanus) populations experiencing an emergent disease epidemic. Mol Ecol 15: 263-275.
28. Hibben CR, Daughtrey ML (1988) Dogwood anthracnose in the northeastern United States. Plant Dis 72: 199-203.
29. Hiers JK, Evans JP (1997) Effects on anthracnose on dogwood mortality and forest composition of the Cumberland Plateau (USA). Conserv Biol 11: 1430-1435.
30. Holzmueller E, Jose S, Jenkins M, Camp A, Long A (2006) Dogwood anthracnose in eastern hardwood forests: what is known and what can be done? J Forest 104: 21-26.
31. Hornik K (2008) The R FAQ. Available at: http://CRAN. R-project. org/doc/FAQ/R-FAQ. html.
32. Innan H, Terauchi R, Miyashita NT (1997) Microsatellite polymorphism in natural populations of the wild plant Arabidopsis thaliana. Genetics 146: 1441-1452.
33. Jenkins MA, White PS (2002) Cornus florida L. mortality and understory composition changes in western Great Smoky Mountains National Park. J Torrey Bot Soc 129: 194-206.
34. Kalinowski ST (2005) HP-Rare: a computer program for performing rarefaction on measures of allelic diversity. Mol Ecolo Notes 5: 187-189.
35. Lande R (1988) Genetics and demography in biological conservation. Science 241: 1455-1460.
36. Leimu R, Mutikainen P, Koricheva J, Fischer M (2006) How general are positive relationships between plant population size, fitness and genetic variation? J Ecol 94: 942-952.
37. Linzey DW, Brecht C (2003a) American beavers (Castor canadensis)-Biodiversity of Great Smoky Mountains National Park, discover life in America, Gatlinburg, Tennessee 37738.
38. Linzey DW, Brecht C (2003b) Eastern gray squirrels (Sciurus carolinensis)-Biodiversity of Great Smoky Mountains National Park, discover life in America, Gatlinburg, Tennessee 37738.
39. Martin WG (1987) Savage gulf ecosystem project. Tennessee Department of Conservation, Nashville.
40. McEwan RW, Mueller RN, Arthur MA, Housman HH (2000) Temporal and ecological patterns of flowering dogwood mortality in the mixed mesophytic forest of eastern Kentucky. J Torrey Bot Soc 127: 221-229.
41. Merkle SA, Andrade GM, Nairn CJ, Powell WA, Maynard CA (2007) Restoration of threatened species: a noble cause for transgenic trees. Tree Genet Genomes 3: 111-118.
42. Myers BR, Walck JL, Blum KE (2004) Vegetation change in a former chestnut stand on the Cumberland Plateau of Tennessee during an 80-year Period (1921-2000). Castanea 69: 81-91.
43. Neff BD, Gross MR (2001) Microsatellite evolution in vertebrates: inference from AC dinucleotide repeats. Evolution 55: 1717-1733.
44. Nei M (1975) Molecular population genetics and evolution. North-Holland Publishing, Amsterdam, The Netherlands.
45. Nei M (1987) Molecular evolutionary genetics. Columbia University Press, New York.
46. Pierce AR, Bromer WR, Rabenold KN (2008) Decline of Cornus florida and forest succession in a Quercus-Carya forest. Plant Ecol 195: 45-53.
47. Pimentel D (1997) Techniques for reducing pesticides: environmental and economic benefits. John Wiley and Sons, Chichester, UK.
48. Pimentel D, Zuniga R, Morrison D (2005) Update on the environmental and economic costs associated with alien-invasive species in the United States. Ecol Econ 52: 273-288.
49. Pritchard JK, Donnelly P (2001) Case-control studies of association in structured or admixed populations. Theor Popul Biol 60: 227-237.
50. Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155: 945-959.
51. Quarterman E, Turner BH, Hemmerly TE (1972) Analysis of virgin mixed mesophytic forests in Savage Gulf, Tennessee. Bull Torrey Bot Club 99: 228-232.
52. Redlin SC (1991) Discula destructiva sp. nov., cause of dogwood anthracnose. Mycologia 83: 633-642.
53. Reed S (2004) Self-incompatibility in Cornus florida L. HortScience 39: 335-338.
54. Reed DH, Frankham R (2003) Correlation between fitness and genetic diversity. Conserv Biol 17: 230-237.
55. Rossell IM, Rossell CR, Hining KJ, Anderson RL (2001) Impacts of dogwood anthracnose (Discula destructiva Redlin) on the fruits of flowering dogwood (Cornus florida L.): implications for wildlife. Am Midl Nat 146: 379-387.
56. Rousset F (2000) Genetic differentiation between individuals. J Evol Biol 13: 58-62.
57. Severns P (2003) Inbreeding and small population size reduce seed set in a threatened and fragmented plant species, Lupinus sulphureus ssp. kincaidii (Fabaceae). Biol Conserv 110: 221-229.
58. Sherald JL, Stidham TM, Hadidian JM, Hoeldtke JE (1996) Progression of the dogwood anthracnose epidemic and the status of flowering dogwood in Catoctin Mountain Park. Plant Dis 80: 310-312.
59. Soltis DE, Morris AB, McLachlan JS, Manos PS, Soltis PS (2006) Comparative phylogeography of unglaciated eastern North America. Mol Ecol 15: 4261-4293.
60. Sork VL, Smouse PE, Apsit VJ, Dyer RJ, Westfall RD (2005) A two-generation analysis of pollen pool genetic structure in flowering dogwood, Cornus florida (Cornaceae), in the Missouri Ozarks. Am J Bot 92: 262-271.
61. Stiles EW (1980) Patterns of fruit presentation and seed dispersal in bird-disseminated woody plants in the eastern deciduous forest. Am Natur 116: 670-688.
62. USBC (2001) Statistical abstract of the United States 2001. U. S. Bureau of the Census, U. S. Government Printing Office, Washington, DC.
63. USDA, NRCS (2008) The PLANTS Database. National Plant Data Center, Baton Rouge, LA 70874-4490 USA (http://plants. usda. gov).
64. Wadl PA, Skinner JA, Dunlap JR, Reed SM, Rinehart TA, Pantalone VR, Trigiano RN (2009) Honeybee-mediated controlled pollinations in Cornus florida and C. kousa intra- and interspecific crosses. HortScience 44: 1527-1533.
65. Wang XW, Trigiano RN, Windham MT, Scheffler BE, Rinehart TA, Spiers JA (2008) Development and characterization of simple sequence repeats for flowering dogwood (Cornus florida L.). Tree Genetics and Genomes 4: 461-468.
66. Wang X, Rinehart TA, Wadl PA, Spiers JM, Hadziabdic D, Windham MT, Trigiano RN (2009) A new electrophoresis technique to separate microsatellite alleles. Afr J Biotechnol 8: 2432-2436.
67. Wilds SP (1997) Gradient analysis of the distribution of a fungal disease of Cornus florida in the southern Appalachian Mountains, Tennessee. J Veg Sci 8: 811-818.
68. Williams CE, Moriarity WJ (1999) Occurrence of flowering dogwood (Cornus florida L.), and mortality by dogwood anthracnose (Discula destructiva Redlin), on the Northern Allegheny Plateau. J Torrey Bot Soc 126: 313-319.
69. Windham WT, Montgomery-Dee M, Parham JM (1995) Factors associated with dogwood anthracnose incidence and severity. Tennessee AgriScience 175: 17-20.
70. Windham MT, Graham ET, Witte WT, Knighten JL, Trigiano RN (1998) Cornus florida 'Appalachian Spring': a white flowering dogwood resistant to dogwood anthracnose. HortScience 33: 1265-1267.
71. Witte WT, Windham MT, Windham AS, Hale FA, Fare DC, Clatterbuck WK (2000) Dogwoods for American gardens. The University of Tennessee Agriculture Extension Service, Knoxville PB1670.
72. Wright S (1931) Evolution in Mendelian populations. Genetics 16: 97-159.
73. Wright S (1943) Isolation by distance. Genetics 28: 114-138.
74. Wright S (1946) Isolation by distance under diverse systems of mating. Genetics 31: 39-59.