Genetic diversity of the killifish Aphanius fasciatus paralleling the environmental changes of Tarquinia salterns habitat

Genetica

Volumn 138, Issue 9, 2010, Pages 1011-1021

  Angeletti, Dario ^a   Cimmaruta, Roberta ^a   Nascetti, Giuseppe ^a  

^a UNIVERSITY OF TUSCIA   (Italy)

Author keywords

Allozymes; Aphanius fasciatus; Environmental changes; Genetic variability; Tarquinia salterns

Indexed keywords

ISOENZYME;

ALLELE; ANIMAL; ARTICLE; CYPRINODONTIFORMES; ECOSYSTEM; GENE FLOW; GENE FREQUENCY; GENE LOCUS; GENETIC DRIFT; GENETIC VARIABILITY; GENETICS; HETEROZYGOTE; ITALY; POPULATION GENETICS;

ALLELES; ANIMALS; ECOSYSTEM; FUNDULIDAE; GENE FLOW; GENE FREQUENCY; GENETIC DRIFT; GENETIC LOCI; GENETIC STRUCTURES; GENETIC VARIATION; GENETICS, POPULATION; HETEROZYGOTE; ISOENZYMES; ITALY;

APHANIUS FASCIATUS; CYPRINODONTIFORMES; CYPRINODONTOIDEI;

EID: 77957343725     PISSN: 00166707     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10709-010-9487-3     Document Type: Article

References (74)

1. Barcia AR, López GE, Hernández D, García-Machado E (2005) Temporal variation of the population structure and genetic diversity of Farfantepenaeus notialis assessed by allozyme loci. Mol Ecol 14: 2933-2942.
2. Belfiore NM, Anderson SL (2001) Effects of contaminants on genetic patterns in aquatic organisms: a review. Mutat Res 489: 97-122.
3. Bickham JW, Sandhu S, Hebert PDN, Chikhi L, Athwal R (2000) Effects of chemical contaminants on genetic diversity in natural populations: implications for biomonitoring and ecotoxicology. Mutat Res 463: 33-51.
4. Blasi S (2006) Structure, seasonal fluctuations and response to disturbance of macroinvertebrate assemblages in hyperaline mediterranean habitat: Tarquinia saltpans. PhD Thesis, University of Tuscia, Viterbo (Italy), p 145. Available from http://dspace. unitus. it/dspace/handle/2067/109.
5. Boessenkool S, Star B, Seddon PJ, Waters JM (2010) Temporal genetic samples indicate small effective population size of the endangered yellow-eyed penguin. Conserv Genet 11: 539-546.
6. Bramucci S (2009) Analysis of macrozoobentic and planktonic communities in a hypersaline aquatic environment: Tarquinia Salterns. PhD Thesis, University of Tuscia, Viterbo (Italy), p 150.
7. Carroll SP, Hendry AP, Reznick DN, Fox CW (2007) Evolution on ecological time-scales. Funct Ecol 21: 387-393.
8. Cimmaruta R, Iaconelli M, Nascetti G, Bullini L (1998) Diversitá genetica in popolazioni di grandi pelagici del Mediterraneo. Biol Mar Medit 5: 300-310.
9. Cimmaruta R, Scialanca F, Luccioli F, Nascetti G (2003) Genetic diversity and environmental stress in Italian populations of the cyprinodont fish Aphanius fasciatus. Oceanol Acta 26: 101-110.
10. Cimmaruta R, Bondanelli P, Nascetti G (2005) Genetic structure and environmental heterogeneity in the European hake (Merluccius merluccius). Mol Ecol 14: 2577-2591.
11. Cimmaruta R, Bondanelli P, Ruggi A, Nascetti G (2008) Genetic structure and temporal stability in the horse mackerel (Trachurus trachurus). Fish Res 89: 114-121.
12. Cornuet JM, Luikart G (1996) Description and power analysis of two tests for inferring recent population bottlenecks from allele frequency data. Genetics 144: 2001-2014.
13. DiBattista JD (2008) Patterns of genetic variation in anthropogenically impacted populations. Conserv Genet 9: 141-156.
14. Eanes WF (2002) Analysis of selection on enzyme polymorphisms. Annu Rev Ecol Syst 30: 301-326.
15. El Mousadik A, Petit RJ (1996) High level of genetic differentiation for allelic richness among populations of the argan tree (Argania spinosa (L.) Skeels) endemic to Morocco. Theor Appl Genet 92: 832-839.
16. Fischer W, Schneider M, Bauchot ML (1987) Fiches FAO d'identification des espèces pour les besoins de la pêche. Mèditerranèe et Mer Noire, (Zone de la pêche 37). Revision I. Volume II. Vertèbrès. FAO CEE, Rome, pp 761-1529.
17. Frankham R (1995) Conservation genetics. Annu Rev Genet 29: 305-327.
18. Frankham R (1996) Relationship of genetic variation to population size in wildlife. Conserv Biol 10: 1500-1508.
19. Fraser DJ, Hansen MM, Ostergaard S, Tessier N, Legault M, Bernatchez L (2007) Comparative estimation of effective population sizes and temporal gene flow in two contrasting population system. Mol Ecol 16: 3866-3889.
20. Funk WC, Forsman ED, Johnson M, Mullins TD, Haig SM (2010) Evidence for recent population bottlenecks in northern spotted owls (Strix occidentalis caurina). Conserv Genet 11: 1013-1021.
21. Goudet J (2001) FSTAT, a program to estimate and test gene diversities and fixation indices (version 2. 9. 3). Available from http://www2. unil. ch/popgen/softwares/fstat. htm. Updated from Goudet (1995) FSTAT version 1. 2: a computer program to calculate F-statistics. J Hered 86: 485-486.
22. Gysels ES, Leentjes V, Volckaert FAM (2004) Small-scale clinal variation, genetic diversity and environmental heterogeneity in the marine gobies Pomatoschistus minutus and P. lozanoi (Gobiidae, Teleostei). Heredity 93: 208-214.
23. Hartl DL, Clark AG (1989) Principles of population genetics. Sinauer Associates, Sunderland.
24. Hauser L, Adcock GJ, Smith PJ, Bernal Ramirez JH, Carvalho GR (2002) Loss of microsatellite diversity and low effective population size in an overexploited population of New Zealand snapper (Pagrus auratus). Proc Natl Acad Sci USA 99: 11742-11747.
25. Hedgecock D (1994) Does variance in reproductive success limit effective population sizes of marine organisms? In: Beaumont AR (ed) Genetics and evolution of aquatic organisms. Chapman & Hall, London, pp 122-134.
26. Hedrick PW (2000) Genetics of populations. Jones and Bartlett Publishers, Sudbury.
27. Hewitt GM (2000) The genetic legacy of the quaternary ice ages. Nature 405: 907-913.
28. Hoarau G, Piquet AMT, Rijnsdorp AD, van Der Veer HW, Stam WT, Olsen JL (2004) Population structure of plaice (Pleuronectes platessa) in northern Europe: a comparison of resolving power between microsatellite and mtDNA data. J Sea Res 51: 183-190.
29. Hoarau G, Boon E, Jongma DN, Ferber S, Palsson J, van der Veer HW, Rijnsdorp AD, Stam WT, Olsen JL (2005) Low effective population size and evidence for inbreeding in an overexploited flatfish, plaice (Pleuronectes platessa L.). Proc R Soc B Biol Sci 272: 497-503.
30. Hoelzel AL (1999) Impact of population bottlenecks on genetic variation and the importance of life-history; a case study of the northern elephant seal. Biol J Linn Soc 68: 23-39.
31. Hoffmann AA, Willi Y (2008) Detecting genetic responses to environmental change. Nat Rev Genet 9: 421-432.
32. Hutchinson WF, van Oosterhout C, Rogers SI, Carvalho GR (2003) Temporal analysis of archived samples indicates marked genetic changes in declining North Sea cod (Gadus morhua). Proc R Soc B Biol Sci 270: 2125-2132.
33. Kidwell DM, Lewitus AJ, Brandt S, Jewett EB, Mason DM (2009) Ecological impacts of hypoxia on living resources. J Exp Mar Biol Ecol 381(Suppl 1): S1-S3.
34. Kimura M, Crow JF (1964) The number of alleles that can be maintained in a finite population. Genetics 49: 725-738.
35. Krafsur SE (2002) Population structure of the tsetse fly Glossina pallidipes estimated by allozyme, microsatellite and mitochondrial gene diversities. Insect Mol Biol 11: 37-45.
36. Lardicci C, Rossi F, Castelli A (1997) Analysis of macrozoobenthic community structure after severe dystrophic crises in a mediterranean coastal lagoon. Mar Pollut Bull 34: 536-547.
37. Lardicci C, Como S, Corti S, Rossi F (2001) Recovery of the macrozoobenthic community after severe dystrophic crises in a mediterranean coastal lagoon (Orbetello, Italy). Mar Pollut Bull 42: 202-214.
38. Leonardos I, Sinis A (1998) Reproductive strategy of Aphanius fasciatus Nardo, 1827 (Pisces, Cyprinodontidae) in the Mesolongi and Etolikon lagoons (W. Greece). Fish Res 35: 171-181.
39. Leonardos I, Sinis A (1999) Population age and sex structure of Aphanius fasciatus Nardo, 1827 (Pisces, Cyprinodontidae) in the Mesolongi and Etolikon lagoons (W. Greece). Fish Res 40: 227-235.
40. Luikart G, Sherwin WB, Steele BM, Allendorf FW (1998) Usefulness of molecular markers for detecting population bottlenecks via monitoring genetic change. Mol Ecol 7: 963-974.
41. Maes GE, Raeymaekers JAM, Pampoulie C, Seynaeve A, Goemans G, Belpaire C, Volckaert FAM (2005) The catadromous European eel Anguilla anguilla (L.) as a model for freshwater evolutionary ecotoxicology: relationship between heavy metal bioaccumulation, condition and genetic variability. Aquat Toxicol 73: 99-114.
42. Maltagliati F (1998a) Preliminary investigation of allozyme genetic variation and population geographical structure in Aphanius fasciatus from Italian brackish-water habitats. J Fish Biol 52: 1130-1140.
43. Maltagliati F (1998b) Does the Mediterranean killifish Aphanius fasciatus (Teleostei: Cyprinodontidae) fit the one-dimensional stepping-stone model of gene flow? Environ Biol Fish 53: 385-392.
44. Maltagliati F (1999) Genetic divergence in natural populations of the Mediterranean brackish-water killifish Aphanius fasciatus. Mar Ecol Prog Ser 179: 155-162.
45. Maltagliati F, Camilli L (2000) Temporal genetic variation in a population of Aphanius fasciatus (Cyprinodontidae) from a brackish-water habitat at Elba Island (Italy). Env Biol Fish 57: 107-112.
46. Nei M, Maruyama T, Chakraborty R (1975) The bottleneck effect and genetic variability in populations. Evolution 29: 1-10.
47. Nevo E (2001) Evolution of genome-phenome diversity under environmental stress. PNAS 98: 6233-6240.
48. Nevo E, Noy R, Lavie B, Beiles A, Muchtar S (1986) Genetic diversity and resistance to marine pollution. Biol J Linn Soc 29: 139-144.
49. Nowak C, Vogt C, Pfenninger M, Schwenk K, Oehlmann J, Streit B, Oetken M (2009) Rapid genetic erosion in pollutant-exposed experimental chironomid populations. Environ Pollut 157: 881-886.
50. Nunney L (1996) The influence of variation in female fecundity on effective population size. Biol J Linn Soc 59: 411-425.
51. Ozbek O, Millet E, Anikster Y, Arslan O, Feldman M (2007) Spatio-temporal genetic variation in populations of wild emmer wheat, Triticum turgidum ssp. dicoccoides, as revealed by AFLP analysis. Theor Appl Genet 115: 19-26.
52. Palstra FP, Ruzzante DE (2008) Genetic estimates of contemporary effective population size: what can they tell us about the importance of genetic stochasticity for wild populations persistence? Mol Ecol 17: 3428-3447.
53. Piry SG, Luikart G, Cornuet JM (1999) BOTTLENECK: a computer program for detecting recent reductions in the effective populations size using allele frequency data. J Hered 90: 502-503.
54. Raymond M, Rousset F (1995) GENEPOP (version 1. 2): population genetic software for exact test and ecumenicism. J Hered 86: 248-249.
55. Ryman N, Utter F, Laikre L (1995) Protection of intraspecific biodiversity of exploited fishes. Rev Fish Biol Fish 5: 417-446.
56. Schneider S, Roessli D, Excoffier L (2000) ARLEQUIN Ver. 2. 000: a software for population genetics data analysis. Genetics and Biometry Laboratory, University of Geneva, Geneva.
57. Schwartz MK, Luikart G, Waples RS (2007) Genetic monitoring as a promising tool for conservation and management. TREE 22: 25-33.
58. Smith PJ, Francis RICC, McVeagh M (1991) Loss of genetic diversity due to fishing pressure. Fish Res 10: 309-316.
59. Spear SF, Petesron CR, Matocq MD, Storfer A (2006) Molecular evidence for historical and recent population size reductions of tiger salamanders (Ambystoma tigrinum) in Yellowstone National Park. Conserv Genet 7: 605-611.
60. Stanton ML, Roy BA, Thiede DA (2000) Evolution in stressful environments. I. Phenotypic variability, phenotypic selection, and response to selection in five distinct environmental stresses. Evolution 54: 93-111.
61. Swofford DL, Selander RB (1999) BIOSYS-2: a computer program for the analysis of allelic variation in population genetics. University of Illinois at Urbana-Champaign, Urbana.
62. Tortonese E (1986) Cyprinodontidae. In: Whitehead PJP, Bauchot ML, Hureau JC, Nielsen J, Tortonese E (eds) Fishes of the north-eastern Atlantic and the Mediterranean. UNESCO, Paris, pp 1341-1345.
63. Turner TF, Wares JP, Gold JR (2002) Genetic effective size is three order of magnitude smaller than adults census size in an abundant, estuarine-dependant marine fish (Sciaenops ocellatus). Genetics 162: 1329-1339.
64. Ungherese G, Mengoni A, Somigli S, Baroni D, Focardi S, Ugolini A (2010) Relationship between heavy metals pollution and genetic diversity in Mediterranean populations of the sandhopper Talitrus saltator (Montagu) (Crustacea, Amphipoda). Environ Pollut 158: 1638-1643.
65. van Straalen NM, Timmermans JTN (2002) Genetic variation in toxicant-stressed populations: an evaluation of the "genetic erosion" hypothesis. Hum Ecol Risk Assess 5: 983-1002.
66. Vucetich JA, Waite TA, Nunney L (1997) Fluctuating population size and the ratio of effective to census population size. Evolution 51: 2017-2021.
67. Wang J (2001) A pseudo-likelihood method for estimating effective population size from temporally spaced samples. Genet Res 78: 243-257.
68. Wang J, Whitlock MC (2003) Estimating effective population size and migration rates from genetic samples over space and time. Genetics 163: 429-446.
69. Waples RS (1989) A generalized approach for estimating effective population size from temporal changes in allele frequency. Genetics 121: 379-391.
70. Waples RS (1991) Genetic methods for estimating the effective size of Cetacean populations. Report Int Whaling Commission Spec Issue 13: 279-300.
71. Waples RS, Yokota M (2007) Temporal estimates of effective populations size in species with overlapping generations. Genetics 175: 219-233.
72. Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution 38: 1358-1370.
73. Willi Y, van Buskirk J, Schmid B, Fischer M (2007) Genetic isolation of fragmented populations is exacerbated by drift and selection. J Evol Biol 20: 534-542.
74. Williamson-Natesan EG (2005) Comparison of methods for detecting bottlenecks from microsatellite loci. Conserv Genet 6: 551-562.