The evolutionary diversification of cyanobacteria: Molecular-phylogenetic and paleontological perspectives

Proceedings of the National Academy of Sciences of the United States of America

Volumn 103, Issue 14, 2006, Pages 5442-5447

  Tomitani, Akiko ^a,c   Knoll, Andrew H ^b   Cavanaugh, Colleen M ^b   Ohno, Terufumi ^a  

^a KYOTO UNIVERSITY   (Japan)

^b HARVARD UNIVERSITY   (United States)

^c JAPAN AGENCY FOR MARINE EARTH SCIENCE AND TECHNOLOGY   (Japan)

Author keywords

Molecular evolution; Phylogeny; Proterozoic

Indexed keywords

OXYGEN; RNA 16S;

AFRICA; ARTICLE; AUSTRALIA; BACTERIAL GENE; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; CELL DIFFERENTIATION; CHINA; CYANOBACTERIUM; EVOLUTION; GENE SEQUENCE; GENETIC ANALYSIS; GENETIC VARIABILITY; GEOCHEMICAL ANALYSIS; HETR GENE; HYPOTHESIS; NITROGEN FIXATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PALEONTOLOGY; PHYLOGENY; PRIORITY JOURNAL; RBCL GENE; RUSSIAN FEDERATION; TAXONOMY;

BASE SEQUENCE; CYANOBACTERIA; DNA PRIMERS; EVOLUTION, MOLECULAR; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S;

BACTERIA (MICROORGANISMS); CYANOBACTERIA;

EID: 33645776968     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0600999103     Document Type: Article

References (53)

1. Whitton, B. A. & Potts, M. (2000) in The Ecology of Cyanobacteria, eds. Whitton, B. A. & Potts, M. (Kluwer, Dordrecht, The Netherlands), pp. 1-11.
2. Liu, H., Nolla, H. A. & Campbell, L. (1997) Aquat. Microb. Ecol. 12, 39-47.
3. Capone, D. G., Zehr, J. P., Paerl, H. W., Bergman, B. & Carpenter, E. J. (1997) Science 276, 1221-1229.
4. Karl, D., Michaels, A., Bergman, B., Capone, D., Carpenter, E., Letelier, R., Lipschultz, F., Paerl, H., Sigman, D. & Stal, L. (2002) Biogeochemistry 57/58, 47-98.
5. Delwiche, C. F. & Palmer, J. D. (1997) in Origins of the Algae and Their Plastids, ed. Bhattachartya, D. (Springer, Berlin), pp. 53-96.
6. Rippka, R., Deruelles, J., Waterbury, J. B., Herdman, M. & Stanier, R. Y. (1979) J. Gen. Microbiol. 111, 1-61.
7. Castenholz, R. W. (2001) in Bergey's Manual of Systematic Bacteriology, eds. Boone, D. R. & Castenholz, R. W. (Springer, New York), 2nd Ed., Vol. 1, pp. 474-487.
8. Wolk, C. P., Ernst, A. & Elhai, J. (1994) in The Molecular Biology of Cyanobacteria, ed. Bryant, D. A. (Kluwer, Dordrecht, The Netherlands), pp. 769-823.
9. Herdman, M. (1987) in The Cyanobacteria, eds. Fay, P. & Van Baalen, C. (Elsevier, Amsterdam), pp. 227-250.
10. Brocks, J. J., Logan, G. A., Buick, R. & Summons, R. E. (1999) Science 285, 1033-1036.
11. Knoll, A. H. (2003) Geobiology 1, 3-14.
12. Buick, R. (1992) Science 255, 74-77.
13. Hofmann, H. J. (1976) J. Paleontol. 50, 1040-1073.
14. Giovannoni, S. J., Turner, S., Olsen, G. J., Barns, S., Lane, D. J. & Pace, N. R. (1988) J. Bacteriol. 170, 3584-3592.
15. Turner, S., Prayer, K. M., Miao, V. P. & Palmer, J. D. (1999) J. Eukaryot. Microbiol. 46, 327-338.
16. Wilmotte, A. & Herdman, M. (2001) in Bergey's Manual of Systematic Bacteriology, eds. Boone, D. R. & Castenholz, R. W. (Springer, New York), 2nd Ed., Vol. 1, pp. 487-493.
17. Zehr, J. P., Mellon, M. T. & Hiorns, W. D. (1997) Microbiology 143, 1443-1450.
18. Henson, B. J., Watson, L. E. & Barnum, S. R. (2004) J. Mol. Evol. 58, 390-399.
19. Felsenstein, J. (1981) J. Mol. Evol. 17, 368-376.
20. Saitou, N. & Nei, M. (1987) Mol. Biol. Evol. 4, 406-425.
21. Fitch, W. M. (1977) Am. Nat. 111, 223-257.
22. Felsenstein, J. (1985) Evolution (Lawrence, Kans.) 39, 783-791.
23. Tabita, F. R. (1999) Photosynth. Res. 60, 1-28.
24. Janson, S., Matveyev, A. & Bergman, B. (1998) FEMS Microbiol. Lett. 168, 173-179.
25. Golubic, S., Sergeev, V. N. & Knoll, A. H. (1995) Lethaia 28, 285-298.
26. Page, R. W., Jackson, M. J. & Krassay, A. A. (2000) Aust. J. Earth Sci. 47, 431-459.
27. Srivastava, P. (2005) Orig. Life Evol. Biosph. 35, 175-185.
28. Amard, B. & Bertrand-Sarfati, J. (1997) Precambrian Res. 81, 197-221.
29. Sánchez-Baracaldo, P., Hayes, P. K. & Blank, C. E. (2005) Geobiology 3, 145-165.
30. Gugger, M. F. & Hoffmann, L. (2004) Int. J. Syst. Evol. Microbiol. 54, 349-357.
31. Knoll, A. H. & Golubic, S. (1992) in Early Organic Evolution: Implications for Mineral and Energy Resources, eds. Schidlowski, M., Golubic, S. & Kimberley, M. M. (Springer, Heidelberg), pp. 450-462.
32. Croft, W. N. & George, E. A. (1959) Bull. Brit. Mus. Nat. Hist. Geol. 3, 339-353.
33. Gallon, J. R. (1992) New Phytol. 122, 571-609.
34. Haystead, A., Robinson, R. & Stewart, W. D. P. (1970) Arch. Mikrobiol. 74, 235-243.
35. Rippka, R. & Waterbury, J. B. (1977) FEMS Microbiol. Lett. 2, 83-86.
36. Weare, N. M. & Benemann, J. R. (1974) J. Bacteriol. 119, 258-265.
37. Maryan, P. S., Eady, R. R., Charplin, A. E. & Gallon, J. R. (1986) J. Gen. Microbiol. 132, 789-796.
38. Ohki, K. & Fujita, Y. (1988) Marine Biol. 98, 111-114.
39. Jensen, B. B. & Cox, R. P. (1983) Arch. Microbiol. 135, 287-292.
40. Rippka, R. & Stanier, R. Y. (1978) J. Gen. Microbiol. 105, 83-94.
41. Fay, P. (1992) Microbiol. Rev. 56, 340-373.
42. Rye, R. & Holland, H. D. (1998) Am. J. Sci. 298, 621-672.
43. Farquhar, J., Bao, H. & Thiemens, M. (2000) Science 289, 756-759.
44. Bekker, A., Holland, H. D., Wang, P. L., Rumble, D., III, Stein, H. J., Hannah, J. L., Coetzee, L. L. & Beukes, N. J. (2004) Nature 427, 117-120.
45. Stal, L. J. (2000) in The Ecology of Cyanobacteria: Their Diversity in Space and Time, ed. Whitton, B. A. (Luver, Dordrecht, The Netherlands), pp. 61-121.
46. Canfield, D. E. & Teske, A. (1996) Nature 382, 127-132.
47. Kaneko, T., Nakamura, Y., Wolk, C. P., Kuritz, T., Sasamoto, S., Watanabe, A., Iriguchi, M., Ishikawa, A., Kawashima, K., Kimura, T., et al. (2001) DNA Res. 8, 205-213, 227-253.
48. Meeks, J. C., Elhai, J., Thiel, T., Potts, M., Larimer, F., Lamerdin, J., Predki, P. & Atlas, R. (2001) Photosynth. Res. 70, 85-106.
49. Ausubel, F. M., Brent, R., Kingston, R. E., Moore, D., Seidmann, J. G., Smith, J. A. & Sturuhl, K., eds. (1987) in Current Protocols in Molecular Biology (Wiley, New York), Sect. 2.4.
50. Urbach, E., Robertson, D. L. & Chisholm, S. W. (1992) Nature 355, 267-270.
51. Jeanmougin, F., Thompson, J. D., Gouy, M., Higgins, D. G. & Gibson, T. J. (1998) Trends Biochem. Sci. 23, 403-405.
52. Wilmotte, A., Van der Auwera, G. & De Wacheter, R. (1993) FEBS Lett. 317, 96-100.
53. Swofford, D. L. (2002) PAUP*: Phylogenetic Analysis Using Parsimony (*and Other Methods) (Sinauer, Sunderland, MA), Version 4.