-
1
-
-
0038826666
-
The design and analysis of microarray experiments: applications in parasitology
-
Morrison D.A., Ellis J.T. The design and analysis of microarray experiments: applications in parasitology. DNA Cell Biol 2003, 22:357-394.
-
(2003)
DNA Cell Biol
, vol.22
, pp. 357-394
-
-
Morrison, D.A.1
Ellis, J.T.2
-
2
-
-
33644673741
-
Microarrays: new tools to unravel parasite transcriptomes
-
Gobert G.N., Moertel L.P., McManus D.P. Microarrays: new tools to unravel parasite transcriptomes. Parasitology 2005, 131:439-448.
-
(2005)
Parasitology
, vol.131
, pp. 439-448
-
-
Gobert, G.N.1
Moertel, L.P.2
McManus, D.P.3
-
3
-
-
33745137089
-
The impact of genomics on the analysis of host resistance to infectious disease
-
Tuite A., Gros P. The impact of genomics on the analysis of host resistance to infectious disease. Microbes Infect 2006, 8:1647-1653.
-
(2006)
Microbes Infect
, vol.8
, pp. 1647-1653
-
-
Tuite, A.1
Gros, P.2
-
4
-
-
40049107350
-
New interventions for malaria: mining the human and parasite genomes
-
Ntoumi F., Kwiatkowski D.P., Diakite M., Mutabingwa T.K., Duffy P.E. New interventions for malaria: mining the human and parasite genomes. Am J Trop Med Hyg 2007, 77:270-275.
-
(2007)
Am J Trop Med Hyg
, vol.77
, pp. 270-275
-
-
Ntoumi, F.1
Kwiatkowski, D.P.2
Diakite, M.3
Mutabingwa, T.K.4
Duffy, P.E.5
-
5
-
-
0141817814
-
Profiling local gene expression changes associated with Eimeria maxima and Eimeria acervulina using cDNA microarray
-
Min W., Lillehoj H.S., Kim S., et al. Profiling local gene expression changes associated with Eimeria maxima and Eimeria acervulina using cDNA microarray. Appl Microbiol Biotechnol 2003, 62:392-399.
-
(2003)
Appl Microbiol Biotechnol
, vol.62
, pp. 392-399
-
-
Min, W.1
Lillehoj, H.S.2
Kim, S.3
-
6
-
-
0035968207
-
Microarray analysis reveals previously unknown changes in Toxoplasma gondii-infected human cells
-
Blader I.J., Manger I.D., Boothroyd J.C. Microarray analysis reveals previously unknown changes in Toxoplasma gondii-infected human cells. J Biol Chem 2001, 276:24223-24231.
-
(2001)
J Biol Chem
, vol.276
, pp. 24223-24231
-
-
Blader, I.J.1
Manger, I.D.2
Boothroyd, J.C.3
-
7
-
-
0034882887
-
Transcriptional profile of Toxoplasma gondii-infected human fibroblasts as revealed by gene-array hybridization
-
Gail M., Gross U., Bohne W. Transcriptional profile of Toxoplasma gondii-infected human fibroblasts as revealed by gene-array hybridization. Mol Genet Genomics 2001, 265:905-912.
-
(2001)
Mol Genet Genomics
, vol.265
, pp. 905-912
-
-
Gail, M.1
Gross, U.2
Bohne, W.3
-
8
-
-
34248210832
-
Epidemiology and control of neosporosis and Neospora caninum
-
Dubey J.P., Schares G., Ortega-Mora L.M. Epidemiology and control of neosporosis and Neospora caninum. Clin Microbiol Rev 2007, 20:323-367.
-
(2007)
Clin Microbiol Rev
, vol.20
, pp. 323-367
-
-
Dubey, J.P.1
Schares, G.2
Ortega-Mora, L.M.3
-
9
-
-
33750053595
-
If control of Neospora caninum infection is technically feasible does it make economic sense?
-
Reichel M.P., Ellis J.T. If control of Neospora caninum infection is technically feasible does it make economic sense?. Vet Parasitol 2006, 142:23-34.
-
(2006)
Vet Parasitol
, vol.142
, pp. 23-34
-
-
Reichel, M.P.1
Ellis, J.T.2
-
10
-
-
0036341832
-
Control options for Neospora caninum infections in cattle-current state of knowledge
-
Reichel M.P., Ellis J.T. Control options for Neospora caninum infections in cattle-current state of knowledge. N Z Vet J 2002, 50:86-92.
-
(2002)
N Z Vet J
, vol.50
, pp. 86-92
-
-
Reichel, M.P.1
Ellis, J.T.2
-
11
-
-
67650499884
-
Neospora caninum-how close are we to development of an efficacious vaccine that prevents abortion in cattle?
-
Reichel M.P., Ellis J.T. Neospora caninum-how close are we to development of an efficacious vaccine that prevents abortion in cattle?. Int J Parasitol 2009, 39:1173-1187.
-
(2009)
Int J Parasitol
, vol.39
, pp. 1173-1187
-
-
Reichel, M.P.1
Ellis, J.T.2
-
12
-
-
0036777173
-
Characterisation of the first Australian isolate of Neospora caninum from cattle
-
Miller C.M., Quinn H.E., Windsor P.A., Ellis J.T. Characterisation of the first Australian isolate of Neospora caninum from cattle. Aust Vet J 2002, 80:620-625.
-
(2002)
Aust Vet J
, vol.80
, pp. 620-625
-
-
Miller, C.M.1
Quinn, H.E.2
Windsor, P.A.3
Ellis, J.T.4
-
13
-
-
19544384583
-
Reduction in transplacental transmission of Neospora caninum in outbred mice by vaccination
-
Miller C., Quinn H., Ryce C., Reichel M.P., Ellis J.T. Reduction in transplacental transmission of Neospora caninum in outbred mice by vaccination. Int J Parasitol 2005, 35:821-828.
-
(2005)
Int J Parasitol
, vol.35
, pp. 821-828
-
-
Miller, C.1
Quinn, H.2
Ryce, C.3
Reichel, M.P.4
Ellis, J.T.5
-
14
-
-
0032918259
-
Comparison of the biological characteristics of two isolates of Neospora caninum
-
Atkinson R., Harper P.A., Ryce C., Morrison D.A., Ellis J.T. Comparison of the biological characteristics of two isolates of Neospora caninum. Parasitology 1999, 118(Pt 4):363-370.
-
(1999)
Parasitology
, vol.118
, Issue.PART 4
, pp. 363-370
-
-
Atkinson, R.1
Harper, P.A.2
Ryce, C.3
Morrison, D.A.4
Ellis, J.T.5
-
15
-
-
0027921442
-
Isolation of Neospora caninum from a British dog
-
Barber J.S., Trees A.J., Om R., Tennant B. Isolation of Neospora caninum from a British dog. Vet Rec 1993, 133:531-532.
-
(1993)
Vet Rec
, vol.133
, pp. 531-532
-
-
Barber, J.S.1
Trees, A.J.2
Om, R.3
Tennant, B.4
-
16
-
-
0029617244
-
Characterization of the first European isolate of Neospora caninum (Dubey, Carpenter, Speer, Topper and Uggla)
-
Barber J.S., Holmdahl O.J., Owen M.R., Guy F., Uggla A., Trees A.J. Characterization of the first European isolate of Neospora caninum (Dubey, Carpenter, Speer, Topper and Uggla). Parasitology 1995, 111(Pt 5):563-568.
-
(1995)
Parasitology
, vol.111
, Issue.PART 5
, pp. 563-568
-
-
Barber, J.S.1
Holmdahl, O.J.2
Owen, M.R.3
Guy, F.4
Uggla, A.5
Trees, A.J.6
-
17
-
-
73449112935
-
A second generation multiplex PCR for typing strains of Neospora caninum using six DNA targets
-
Al-Qassab S., Reichel M.P., Ellis J. A second generation multiplex PCR for typing strains of Neospora caninum using six DNA targets. Mol Cell Probes 2010, 24:20-26.
-
(2010)
Mol Cell Probes
, vol.24
, pp. 20-26
-
-
Al-Qassab, S.1
Reichel, M.P.2
Ellis, J.3
-
18
-
-
0035041657
-
Verification and initial annotation of the NIA mouse 15K cDNA clone set
-
Kargul G.J., Dudekula D.B., Qian Y., et al. Verification and initial annotation of the NIA mouse 15K cDNA clone set. Nat Genet 2001, 28:17-18.
-
(2001)
Nat Genet
, vol.28
, pp. 17-18
-
-
Kargul, G.J.1
Dudekula, D.B.2
Qian, Y.3
-
19
-
-
1342294092
-
Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation
-
Yang Y.H., Dudoit S., Luu P., et al. Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res 2002, 30:e15.
-
(2002)
Nucleic Acids Res
, vol.30
-
-
Yang, Y.H.1
Dudoit, S.2
Luu, P.3
-
20
-
-
0035942271
-
Significance analysis of microarrays applied to the ionizing radiation response
-
Tusher V.G., Tibshirani R., Chu G. Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci USA 2001, 98:5116-5121.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 5116-5121
-
-
Tusher, V.G.1
Tibshirani, R.2
Chu, G.3
-
21
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
Eisen M.B., Spellman P.T., Brown P.O., Botstein D. Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci USA 1998, 95:14863-14868.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 14863-14868
-
-
Eisen, M.B.1
Spellman, P.T.2
Brown, P.O.3
Botstein, D.4
-
22
-
-
3042686005
-
Bayesian mixture model based clustering of replicated microarray data
-
Medvedovic M., Yeung K.Y., Bumgarner R.E. Bayesian mixture model based clustering of replicated microarray data. Bioinformatics 2004, 20:1222-1232.
-
(2004)
Bioinformatics
, vol.20
, pp. 1222-1232
-
-
Medvedovic, M.1
Yeung, K.Y.2
Bumgarner, R.E.3
-
23
-
-
9444225935
-
Java Treeview-extensible visualization of microarray data
-
Saldanha A.J. Java Treeview-extensible visualization of microarray data. Bioinformatics 2004, 20:3246-3248.
-
(2004)
Bioinformatics
, vol.20
, pp. 3246-3248
-
-
Saldanha, A.J.1
-
24
-
-
0036020892
-
A direct approach to false discovery rates
-
Storey J.D. A direct approach to false discovery rates. J R Stat Soc 2002, 64:479-498.
-
(2002)
J R Stat Soc
, vol.64
, pp. 479-498
-
-
Storey, J.D.1
-
25
-
-
0345822598
-
The positive false discovery rate: a Bayesian interpretation and the q-value
-
Storey J.D. The positive false discovery rate: a Bayesian interpretation and the q-value. Ann Stat 2003, 31:2013-2035.
-
(2003)
Ann Stat
, vol.31
, pp. 2013-2035
-
-
Storey, J.D.1
-
26
-
-
48449095135
-
ProfCom: a web tool for profiling the complex functionality of gene groups identified from high-throughput data
-
Antonov A.V., Schmidt T., Wang Y., Mewes H.W. ProfCom: a web tool for profiling the complex functionality of gene groups identified from high-throughput data. Nucleic Acids Res 2008, 36:W347-W351.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Antonov, A.V.1
Schmidt, T.2
Wang, Y.3
Mewes, H.W.4
-
27
-
-
33847205295
-
GENECODIS: a web-based tool for finding significant concurrent annotations in gene lists
-
Carmona-Saez P., Chagoyen M., Tirado F., Carazo J.M., Pascual-Montano A. GENECODIS: a web-based tool for finding significant concurrent annotations in gene lists. Genome Biol 2007, 8:R3.
-
(2007)
Genome Biol
, vol.8
-
-
Carmona-Saez, P.1
Chagoyen, M.2
Tirado, F.3
Carazo, J.M.4
Pascual-Montano, A.5
-
28
-
-
34547589578
-
DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists
-
Huang da W., Sherman B.T., Tan Q., et al. DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists. Nucleic Acids Res 2007, 35:W169-W175.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Huang da, W.1
Sherman, B.T.2
Tan, Q.3
-
29
-
-
43349099395
-
Using the iHOP information resource to mine the biomedical literature on genes, proteins, and chemical compounds
-
[Chapter 1:Unit1 16]
-
Hoffmann R. Using the iHOP information resource to mine the biomedical literature on genes, proteins, and chemical compounds. Curr Protoc Bioinformatics 2007, [Chapter 1:Unit1 16].
-
(2007)
Curr Protoc Bioinformatics
-
-
Hoffmann, R.1
-
30
-
-
33846892994
-
IDconverter and IDClight: conversion and annotation of gene and protein IDs
-
Alibes A., Yankilevich P., Canada A., Diaz-Uriarte R. IDconverter and IDClight: conversion and annotation of gene and protein IDs. BMC Bioinformatics 2007, 8:9.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 9
-
-
Alibes, A.1
Yankilevich, P.2
Canada, A.3
Diaz-Uriarte, R.4
-
32
-
-
38349008400
-
Expression microarray analysis implicates apoptosis and interferon-responsive mechanisms in susceptibility to experimental cerebral malaria
-
Lovegrove F.E., Gharib S.A., Patel S.N., Hawkes C.A., Kain K.C., Liles W.C. Expression microarray analysis implicates apoptosis and interferon-responsive mechanisms in susceptibility to experimental cerebral malaria. Am J Pathol 2007, 171:1894-1903.
-
(2007)
Am J Pathol
, vol.171
, pp. 1894-1903
-
-
Lovegrove, F.E.1
Gharib, S.A.2
Patel, S.N.3
Hawkes, C.A.4
Kain, K.C.5
Liles, W.C.6
-
33
-
-
1842503151
-
Transcriptional profiling reveals suppressed erythropoiesis, up-regulated glycolysis, and interferon-associated responses in murine malaria
-
Sexton A.C., Good R.T., Hansen D.S., et al. Transcriptional profiling reveals suppressed erythropoiesis, up-regulated glycolysis, and interferon-associated responses in murine malaria. J Infect Dis 2004, 189:1245-1256.
-
(2004)
J Infect Dis
, vol.189
, pp. 1245-1256
-
-
Sexton, A.C.1
Good, R.T.2
Hansen, D.S.3
-
34
-
-
42949104145
-
Predominance of interferon-related responses in the brain during murine malaria, as identified by microarray analysis
-
Miu J., Hunt N.H., Ball H.J. Predominance of interferon-related responses in the brain during murine malaria, as identified by microarray analysis. Infect Immun 2008, 76:1812-1824.
-
(2008)
Infect Immun
, vol.76
, pp. 1812-1824
-
-
Miu, J.1
Hunt, N.H.2
Ball, H.J.3
-
35
-
-
34247140278
-
Toxoplasma gondii dysregulates IFN-gamma-inducible gene expression in human fibroblasts: insights from a genome-wide transcriptional profiling
-
Kim S.K., Fouts A.E., Boothroyd J.C. Toxoplasma gondii dysregulates IFN-gamma-inducible gene expression in human fibroblasts: insights from a genome-wide transcriptional profiling. J Immunol 2007, 178:5154-5165.
-
(2007)
J Immunol
, vol.178
, pp. 5154-5165
-
-
Kim, S.K.1
Fouts, A.E.2
Boothroyd, J.C.3
-
36
-
-
33747824476
-
Unique responses of the avian macrophage to different species of Eimeria
-
Dalloul R.A., Bliss T.W., Hong Y.H., et al. Unique responses of the avian macrophage to different species of Eimeria. Mol Immunol 2007, 44:558-566.
-
(2007)
Mol Immunol
, vol.44
, pp. 558-566
-
-
Dalloul, R.A.1
Bliss, T.W.2
Hong, Y.H.3
-
37
-
-
1942477562
-
The cell-mediated immune response to Neospora caninum during pregnancy in the mouse is associated with a bias towards production of interleukin-4
-
Quinn H.E., Miller C.M., Ellis J.T. The cell-mediated immune response to Neospora caninum during pregnancy in the mouse is associated with a bias towards production of interleukin-4. Int J Parasitol 2004, 34:723-732.
-
(2004)
Int J Parasitol
, vol.34
, pp. 723-732
-
-
Quinn, H.E.1
Miller, C.M.2
Ellis, J.T.3
-
38
-
-
0031796977
-
Cellular immune responses in cattle experimentally infected with Neospora caninum
-
Lunden A., Marks J., Maley S.W., Innes E.A. Cellular immune responses in cattle experimentally infected with Neospora caninum. Parasite Immunol 1998, 20:519-526.
-
(1998)
Parasite Immunol
, vol.20
, pp. 519-526
-
-
Lunden, A.1
Marks, J.2
Maley, S.W.3
Innes, E.A.4
-
39
-
-
0031870054
-
Identification of Neospora antigens recognized by CD4+ T cells and immune sera from experimentally infected cattle
-
Marks J., Lunden A., Harkins D., Innes E. Identification of Neospora antigens recognized by CD4+ T cells and immune sera from experimentally infected cattle. Parasite Immunol 1998, 20:303-309.
-
(1998)
Parasite Immunol
, vol.20
, pp. 303-309
-
-
Marks, J.1
Lunden, A.2
Harkins, D.3
Innes, E.4
-
40
-
-
0033815634
-
Neospora caninum-associated abortion in cattle: the time of experimentally-induced parasitaemia during gestation determines foetal survival
-
Williams D.J., Guy C.S., McGarry J.W., et al. Neospora caninum-associated abortion in cattle: the time of experimentally-induced parasitaemia during gestation determines foetal survival. Parasitology 2000, 121:347-358.
-
(2000)
Parasitology
, vol.121
, pp. 347-358
-
-
Williams, D.J.1
Guy, C.S.2
McGarry, J.W.3
-
41
-
-
0031001103
-
Neospora caninum: role for immune cytokines in host immunity
-
Khan I.A., Schwartzman J.D., Fonseka S., Kasper L.H. Neospora caninum: role for immune cytokines in host immunity. Exp Parasitol 1997, 85:24-34.
-
(1997)
Exp Parasitol
, vol.85
, pp. 24-34
-
-
Khan, I.A.1
Schwartzman, J.D.2
Fonseka, S.3
Kasper, L.H.4
-
42
-
-
0031957265
-
Comparison of intracerebral parasite load, lesion development, and systemic cytokines in mouse strains infected with Neospora caninum
-
Long M.T., Baszler T.V., Mathison B.A. Comparison of intracerebral parasite load, lesion development, and systemic cytokines in mouse strains infected with Neospora caninum. J Parasitol 1998, 84:316-320.
-
(1998)
J Parasitol
, vol.84
, pp. 316-320
-
-
Long, M.T.1
Baszler, T.V.2
Mathison, B.A.3
-
43
-
-
0032745343
-
Interferon-gamma and interleukin-12 mediate protection to acute Neospora caninum infection in BALB/c mice
-
Baszler T.V., Long M.T., McElwain T.F., Mathison B.A. Interferon-gamma and interleukin-12 mediate protection to acute Neospora caninum infection in BALB/c mice. Int J Parasitol 1999, 29:1635-1646.
-
(1999)
Int J Parasitol
, vol.29
, pp. 1635-1646
-
-
Baszler, T.V.1
Long, M.T.2
McElwain, T.F.3
Mathison, B.A.4
-
44
-
-
0036346859
-
Characterization of an outbred pregnant mouse model of Neospora caninum infection
-
Quinn H.E., Miller C.M., Ryce C., Windsor P.A., Ellis J.T. Characterization of an outbred pregnant mouse model of Neospora caninum infection. J Parasitol 2002, 88:691-696.
-
(2002)
J Parasitol
, vol.88
, pp. 691-696
-
-
Quinn, H.E.1
Miller, C.M.2
Ryce, C.3
Windsor, P.A.4
Ellis, J.T.5
-
46
-
-
59849101586
-
Function of mitochondrial Stat3 in cellular respiration
-
Wegrzyn J., Potla R., Chwae Y.J., et al. Function of mitochondrial Stat3 in cellular respiration. Science 2009, 323:793-797.
-
(2009)
Science
, vol.323
, pp. 793-797
-
-
Wegrzyn, J.1
Potla, R.2
Chwae, Y.J.3
-
47
-
-
58649119388
-
Regulation of the IL-23 and IL-12 balance by Stat3 signaling in the tumor microenvironment
-
Kortylewski M., Xin H., Kujawski M., et al. Regulation of the IL-23 and IL-12 balance by Stat3 signaling in the tumor microenvironment. Cancer Cell 2009, 15:114-123.
-
(2009)
Cancer Cell
, vol.15
, pp. 114-123
-
-
Kortylewski, M.1
Xin, H.2
Kujawski, M.3
-
48
-
-
64849087205
-
Macrophage oxygen sensing modulates antigen presentation and phagocytic functions involving IFN-gamma production through the HIF-1 alpha transcription factor
-
Acosta-Iborra B., Elorza A., Olazabal I.M., et al. Macrophage oxygen sensing modulates antigen presentation and phagocytic functions involving IFN-gamma production through the HIF-1 alpha transcription factor. J Immunol 2009, 182:3155-3164.
-
(2009)
J Immunol
, vol.182
, pp. 3155-3164
-
-
Acosta-Iborra, B.1
Elorza, A.2
Olazabal, I.M.3
|