Chloroplast DNA inheritance, ancestry, and sequencing in Fragaria

Acta Horticulturae

Volumn 859, Issue , 2010, Pages 221-228

  Davis, T M ^a   Shields, M E ^a   Reinhard, A E ^a   Reavey, P A ^a   Lin, J ^a   Zhang, H ^a   Mahoney, L L ^a  

^a UNIVERSITY OF NEW HAMPSHIRE   (United States)

Author keywords

Allopolyploid; Ancestry; cpDNA; Genome; Markers; Maternal; Strawberry

Indexed keywords

FRAGARIA; FRAGARIA VESCA SUBSP. AMERICANA; FRAGARIA X ANANASSA;

EID: 77957294156     PISSN: 05677572     EISSN: None     Source Type: Book Series    
DOI: 10.17660/ActaHortic.2010.859.25     Document Type: Conference Paper

References (28)

1. Bors, R.H. 2000. A streamlined synthetic octoploid system that emphasises Fragaria vesca as a bridge species. Ph.D., University of Guelph, Guelph, Ont., Canada.
2. Dale, A. and Sjulin, T.M. 1990. Few cytoplasms contribute to North American strawberry cultivars. HortScience 25:1341-1342.
3. Davis, T.M., Yu, H., Haigus, K.M. and McGown, P.J. 1995. Template mixing: A method of enhancing detection and interpretation of codominant RAPD markers. Theor. Appl. Genet. 91:582-588.
4. Dhingra, A. and Folta, K.M. 2005. ASAP: amplification, sequencing & annotation of plastomes. BMC Genomics. 6:176.
5. Eriksson, T., Hibbs, M.S., Yoder, A.D., Delwiche, C.F. and Donoghue, M.J. 2003. The phylogeny of Rosoideae (Rosaceae) based on sequences of the internal transcribed spacers (ITS) of nuclear ribosomal DNA and the trnL/F region of chloroplast DNA. Int. J. Plant Sci. 164:197-211.
6. Evans, W.D. and Jones, J.K. 1967. Incompatibility in Fragaria. Can. J. Genet. Cytol. 9:831-836.
7. Folta, K.M. and Davis, T.M. 2006. Strawberry genes and genomics. Crit. Rev. Plant Sci. 25:399-415.
8. Harrison, R.E., Luby, J.J. and Furnier, J. 1997. Chloroplast DNA restriction fragment variation among strawberry (Fragaria spp.) taxa. J. Am. Soc. Hort. Sci. 122:63-68.
9. Hummer, K.E. and Hancock, J.F. 2009. Strawberry genomics: botanical history, cultivation, traditional breeding, and new technologies, p.413-435. In: K.M. Folta and S.E. Gardiner (eds.), Genetics and Genomics of Rosaceae. Springer, New York.
10. Hummer, K.E., Nathewet, P. and Yanagi, T. 2009. Decaploidy in Fragaria iturupensis (Rosaceae). Am. J. Bot. 96:713-716.
11. Lin, J. and Davis, T.M. 2000. S1 analysis of long PCR heteroduplexes: detection of chloroplast indel polymorphisms in Fragaria. Theor. Appl. Genet. 101:415-420.
12. Mahoney, L.L., Quimby, M.L., Shields, M.E. and Davis, T.M. 2010. Mitochondrial DNA transmission, ancestry, and sequences in Fragaria. Acta Hort. 859:301-308.
13. Masoud, S.A., Johnson, L.B. and Sorenson, E.L. 1990. High transmission of paternal plastid DNA in alfalfa plants demonstrated by restriction fragment polymorphic analysis. Theor. Appl. Genet. 79:49-55.
14. Murfett, J., Strabala, T.J., Zurek, D.M., Mou, B., Beecher, B. and McClure, B.A. 1996. S RNase and interspecific pollen rejection in the genus Nicotiana: Multiple pollenrejection pathways contribute to unilateral incompatibility between self-incompatible and self-compatible species. Plant Cell. 8:943-958.
15. Potter, D., Eriksson, T., Evans, R.C., Oh, S.-H., Smedmark, J.E.E., Morgan, D.R., Kerr, M., Robertson, K.R., Arsenault, M., Dickinson, T.A. and Campbell, C.S. 2007. Phylogeny and classification of Rosaceae. Plant Sys. Evol. 266:5-43.
16. Potter, D., Luby, J.J. and Harrison, R.E. 2000. Phylogenetic relationships among species of Fragaria (Rosaceae) inferred from non-coding nuclear and chloroplast DNA sequences. Syst. Botany 25:337-348.
17. Rousseau-Gueutin, M., Gaston, A., Aïnouche, A., Aïnouche, M.L., Olbricht, K., Staudt, G., Richard, L. and Denoyes-Rothan, B. 2009. Tracking the evolutionary history of polyploidy in Fragaria L. (strawberry): new insights from phylogenetic analyses of low-copy nuclear genes. Mol. Phylogenet. Evol. 51:515-530.
18. Sargent, D.J. 2005. A genetic investigation of diploid Fragaria. Ph. D., University of Reading, Reading.
19. Sargent, D.J., Davis, T.M. and Simpson, D.W. 2009. Strawberry (Fragaria spp.) structural genomics. p.437-456. In: S.E. Gardiner and K.M. Folta (eds.), Genetics and Genomics of Rosaceae, Springer, New York.
20. Schumann, C.M. and Hancock, J.F. 1989. Paternal inheritance of plastids in Medicago sativa. Theor. Appl. Genet. 78:863-866.
21. Smith, S.E., Bingham, E.T. and Fulton, R.W. 1986. Transmission of chlorophyll deficiencies in Medicago sativa: Evidence for biparental inheritance of plastids. J. Hered. 77:35-38.
22. Staudt, G. 1973. Fragaria iturupensis, eine neue Erdbeerart aus Ostasien. Willdenowia 7:101-104.
23. Staudt, G. 1989. The species of Fragaria, their taxonomy and geographical distribution. Acta Hort. 265:23-33.
24. Staudt, G. 1999. Systematics and geographic distribution of the American strawberry species: taxonomic studies in the genus Fragaria (Rosaceae: Potentilleae). vol. 81. University of California Publications in Botany, Berkeley.
25. Staudt, G., DiMeglio, L.M., Davis, T.M. and Gerstberger, P. 2003. Fragaria xbifera Duch.: Origin and taxonomy. Bot. Jahrb. Syst. 125:53-72.
26. Taberlet, P., Gielly, L., Pautou, G. and Bouvet, J. 1991. Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Mol. Biol. 17:1105-1110.
27. Testolin, R. and Cipriani, G. 1997. Paternal inheritance of chloroplast DNA and maternal inheritance of mitochondrial DNA in the genus Actinidia. Theor. Appl. Genet. 94:897-903.
28. Zerbino, D.R. and Birney, E. 2008. Velvet: Algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821-829.