Evaluation of Protein Extraction Methods for Vitis vinifera Leaf and Root Proteome Analysis by Two-Dimensional Electrophoresis

Journal of Integrative Plant Biology

Volumn 52, Issue 10, 2010, Pages 933-940

  Jellouli, Neila ^a   Salem, Asma Ben ^a   Ghorbel, Abdelwahed ^a   Jouira, Hatem Ben ^a  

^a CENTRE DE BIOTECHNOLOGIE DE BORJ CÉDRIA   (Tunisia)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEOME; VEGETABLE PROTEIN;

ACETIC ACID; ACETONE; BIOLOGICAL ANALYSIS; ELECTROKINESIS; EXTRACTION METHOD; LEAF; PLANT EXTRACT; PROTEIN; VINE;

ARTICLE; CHEMISTRY; GRAPE; ISOLATION AND PURIFICATION; METHODOLOGY; PLANT LEAF; PLANT ROOT; TWO DIMENSIONAL GEL ELECTROPHORESIS;

ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; PLANT LEAVES; PLANT PROTEINS; PLANT ROOTS; PROTEOME; VITIS;

VITACEAE; VITIS; VITIS VINIFERA;

EID: 77957237157     PISSN: 16729072     EISSN: 17447909     Source Type: Journal    
DOI: 10.1111/j.1744-7909.2010.00973.x     Document Type: Article

References (28)

1. Bradford M. A rapid and sensitive method for the quantification of microgram quantities of protein utilizing the principal of protein-due binding. Ann. Biochem. 1976, 72:248-254.
2. Baerenfaller K, Grossmann J, Grobei MA, Hull R, Hirsch-Hoffmann M, Yalovsky S. Genome-scale proteomics reveals Arabidopsis thaliana gene models and proteome dynamics. Science 2008, 320:938-941.
3. Carpentier SC, Witters E, Laukens K, Deckers P, Swennen R, Panis B. Preparation of protein extracts from recalcitrant plant tissues: an evaluation of different methods for two-dimensional gel electrophoresis analysis. Proteomics 2005, 5:2497-2507.
4. Castro AJ, Carapito C, Zorn N, Magne C, Leize E, Dorsselaer AV, Clément C. Proteomic analysis of grapevine (Vitis vinifera L.) tissues subjected to herbicide stress. J. Exp. Bot. 2005, 2783:2795-2856.
5. Chevalier F, Martin O, Rofidal V, Devauchelle AD, Barteau S, Sommerer N, Rossignol M. Proteomic investigation of natural variation between Arabidopsis ecotypes. Proteomics 2004, 4:1372-1381.
6. Damerval C, de Vienne D, Zivy M, Thiellement H. The technical improvements in two-dimensional electrophoresis increase the level of genetic variation detected in wheat-seedling proteins. Electrophoresis 1986, 7:52-54.
7. Devouge V, Rogniaux H, Nesi N, Tessier D, Gueguen J, Larre C. Differential proteomic analysis of four near-Isogenic Brassica napus varieties bred for their erucic acid and glucosinolate contents. J. Proteome Res. 2007, 6:1342-1353.
8. Deytieux C, Geny L, Lapaillerie D, Claverol S, Bonneu M, Donèche B. Proteome analysis of grape skins during ripening. J. Exp. Bot. 2007, 58:1851-1562.
9. Gianazza E, De Ponti P, Scienza A, Villa P, Martinelli L. Monitoring by two-dimensional electrophoresis somatic embryogenesis in leaf and petiole explants from Vitis. Electrophoresis 1992, 13:203-209.
10. Gorg A, Weiss W, Dunn MJ. Current two-dimensional electrophoresis technology for proteomics. Proteomics 2004, 4:3665-3685.
11. Hewitt EJ. Sand and water culture methods used in the study of plant nutrition. 1966, 431-432. 2nd eds, Commonwealth Bureau of Horticulture and Plantation Crops. East Malling. Technical Communication, N° 22-Commonwealth Agricultural Bureau. Farnham Royal England, pp
12. Hurkman WJ, Tanaka CK. Solubilization of plant membrane proteins for analysis by two-dimensional gel electrophoresis. Plant Physiol. 1986, 802:806-881.
13. Islam N, Lonsdale M, Upadhyaya NM, Higgins TJ, Hirano H, Akhurst R. Protein extraction from mature rice leaves for two-dimensional gel electrophoresis and its application in proteome analysis. Proteomics 2004, 1903-1908.
14. Laemmli UK. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 1970, 227:680-685.
15. Loomis WD, Bataille J. Plant phenolic compounds and the isolation of plant enzymes. Phytochemistry 1966, 5:423-438.
16. Maldonado AN, Echevarria-Zomeno S, Jean-Baptiste S, Hernandez M, Jorrin-Novo JV. Evaluation of three different protocols of protein extraction for Arabidopsis thaliana leaf proteome analysis by two-dimensional electrophoresis. J. Proteomics 2008, 461-472.
17. Nandakumar MP, Shen J, Raman B, Marten MR. Solubilization of trichloroacetic acid (TCA) precipitated microbial proteins via naOH for two-dimensional electrophoresis. J. Proteome Res. 2003, 2:89-93.
18. Negri AS, Prinsi B, Scienza A, Morgutti S, Cocucci M, Espen L. Analysis of grape berry cell wall proteome: a comparative evaluation of extraction methods. J. Plant Physiol. 2008, 165:1379-1389.
19. Saravanan RS, Rose JKC. A critical evaluation of sample extraction techniques for enhanced proteomic analysis of recalcitrant plant tissues. Proteomics 2004, 4:2522-2532.
20. Sarry JE, Kuhn L, Ducruix C, Lafaye A, Junot C, Hugouvieux V, Jourdain A, Bastien O, Fievet JB, Vailhen D, Amekraz B, Moulin C, Ezan E, Garin J, Bourguignon J. The early responses of Arabidopsis thaliana cells to cadmium exposure explored by protein and metabolite profiling analyses. Proteomics 2006, 6:2180-2198.
21. Sarry JE, Sommerer N, Sauvage FX, Bergoin A, Rossignol M, Albagnac G, Romieu C. Grape berry biochemistry revisited upon proteomic analysis of the mesocarp. Proteomics 2004, 4:201-215.
22. Shaw M, Riederer BM. Sample preparation for two-dimensional gel electrophoresis. Proteomics 2003, 3:1408-1417.
23. Schuster AM, Davies E. Ribonucleic acid and protein metabolism in pea epicotyls. II. Response to wounding in aged tissue. Plant Physiol. 1983, 73:817-821.
24. Tesnières C, Robin JP. Two-dimensional electrophoresis of the total polypeptides in ripe red grape berries. Electrophoresis 1992, 13:93-96.
25. Vincent D, Wheatley MD, Cramer GR. Optimization of protein extraction and solubilization for mature grape berry clusters. Electrophoresis 2006, 27:1853-1865.
26. Vincent D, Ergul A, Bohlman1 MC, Tattersall EAR, Tillett RL, Wheatley MD, Woolsey R, Quilici DR, Joets J, Schlauch K, Schooley DA, Cushman JC, Cramer GR. Proteomic analysis reveals differences between Vitis vinifera L. cv. Chardonnay and cv. Cabernet Sauvignon and their responses to water deficit and salinity. J. Exp. Bot. 2007, 58:1873-1892.
27. Wang W, Scali M, Vignani R, Spadafora A, Sensi E, Mazzuca S. Protein extraction for two-dimensional electrophoresis from olive leaf, a plant tissue containing high levels of interfering compounds. Electrophoresis 2003, 24:2369-2375.
28. Wu FS, Wang MY, Wu FS, Wang MY. Extraction of proteins for sodium dodecyl sulfate-polyacrylamide gel electrophoresis from protease-rich plant tissues. Anal. Biochem. 1984, 139:100-103.