-
1
-
-
55949129986
-
The multinational arabidopsis steering subcommittee for proteomics assembles the largest proteome database resource for plant systems biology
-
Weckwerth W., Baginsky S., van Wijk K., Heazlewood J.L., Millar H. The multinational arabidopsis steering subcommittee for proteomics assembles the largest proteome database resource for plant systems biology. J Proteome Res 2008, 7(10):4209-4210.
-
(2008)
J Proteome Res
, vol.7
, Issue.10
, pp. 4209-4210
-
-
Weckwerth, W.1
Baginsky, S.2
van Wijk, K.3
Heazlewood, J.L.4
Millar, H.5
-
2
-
-
0035582244
-
An automated multidimensional protein identification technology for shotgun proteomics
-
Wolters D.A., Washburn M.P., Yates J.R. An automated multidimensional protein identification technology for shotgun proteomics. Anal Chem 2001, 73:5683-5690.
-
(2001)
Anal Chem
, vol.73
, pp. 5683-5690
-
-
Wolters, D.A.1
Washburn, M.P.2
Yates, J.R.3
-
3
-
-
59149087245
-
Plant proteomics: concepts, applications, and novel strategies for data interpretation
-
Baginsky S. Plant proteomics: concepts, applications, and novel strategies for data interpretation. Mass Spectrom Rev 2009, 28:93-120.
-
(2009)
Mass Spectrom Rev
, vol.28
, pp. 93-120
-
-
Baginsky, S.1
-
4
-
-
63349097597
-
Plant proteomics update (2007-2008): second-generation proteomic techniques, an appropriate experimental design, and data analysis to fulfill MIAPE standards, increase plant proteome coverage and expand biological knowledge
-
Jorrin-Novo J.V., Maldonado A.M., Echevarria-Zomeno S., Valledor L., Castillejo M.A., Curto M., et al. Plant proteomics update (2007-2008): second-generation proteomic techniques, an appropriate experimental design, and data analysis to fulfill MIAPE standards, increase plant proteome coverage and expand biological knowledge. J Proteomics 2009, 72:285-314.
-
(2009)
J Proteomics
, vol.72
, pp. 285-314
-
-
Jorrin-Novo, J.V.1
Maldonado, A.M.2
Echevarria-Zomeno, S.3
Valledor, L.4
Castillejo, M.A.5
Curto, M.6
-
5
-
-
66149173521
-
Proteome of plant peroxisomes: new perspectives on the role of these organelles in cell biology
-
Palma J.M., Corpas F.J., del Rio L.A. Proteome of plant peroxisomes: new perspectives on the role of these organelles in cell biology. Proteomics 2009, 9:2301-2312.
-
(2009)
Proteomics
, vol.9
, pp. 2301-2312
-
-
Palma, J.M.1
Corpas, F.J.2
del Rio, L.A.3
-
6
-
-
63349084973
-
Advancements in plant proteomics using quantitative mass spectrometry
-
Oeljeklaus S., Meyer H.E., Warscheid B. Advancements in plant proteomics using quantitative mass spectrometry. J Proteomics 2009, 72:545-554.
-
(2009)
J Proteomics
, vol.72
, pp. 545-554
-
-
Oeljeklaus, S.1
Meyer, H.E.2
Warscheid, B.3
-
8
-
-
75949098395
-
Signaling between Chloroplasts and the Nucleus: Can a Systems Biology Approach Bring Clarity to a Complex and Highly Regulated Pathway?
-
Jung H.S., Chory J. Signaling between Chloroplasts and the Nucleus: Can a Systems Biology Approach Bring Clarity to a Complex and Highly Regulated Pathway?. Plant Physiol 2010, 152:453-459.
-
(2010)
Plant Physiol
, vol.152
, pp. 453-459
-
-
Jung, H.S.1
Chory, J.2
-
10
-
-
1842432608
-
The Arabidopsis thaliana chloroplast proteome reveals pathway abundance and novel protein functions
-
Kleffmann T., Russenberger D., von Zychlinski A., Christopher W., Sjolander K., Gruissem W., et al. The Arabidopsis thaliana chloroplast proteome reveals pathway abundance and novel protein functions. Curr Biol 2004, 14:354-362.
-
(2004)
Curr Biol
, vol.14
, pp. 354-362
-
-
Kleffmann, T.1
Russenberger, D.2
von Zychlinski, A.3
Christopher, W.4
Sjolander, K.5
Gruissem, W.6
-
11
-
-
34248531753
-
Locating proteins in the cell using TargetP, SignalP and related tools
-
Emanuelsson O., Brunak S., von Heijne G., Nielsen H. Locating proteins in the cell using TargetP, SignalP and related tools. Nat Protoc 2007, 2:953-971.
-
(2007)
Nat Protoc
, vol.2
, pp. 953-971
-
-
Emanuelsson, O.1
Brunak, S.2
von Heijne, G.3
Nielsen, H.4
-
12
-
-
44349099751
-
Sorting signals, N-terminal modifications and abundance of the chloroplast proteome
-
Zybailov B., Rutschow H., Friso G., Rudella A., Emanuelsson O., Sun Q., et al. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. PLoS ONE 2008, 3:e1994.
-
(2008)
PLoS ONE
, vol.3
-
-
Zybailov, B.1
Rutschow, H.2
Friso, G.3
Rudella, A.4
Emanuelsson, O.5
Sun, Q.6
-
13
-
-
77953149231
-
AT_CHLORO: A comprehensive chloroplast proteome database with subplastidiallocalization and curated information on envelope proteins
-
Ferro M., Brugiere S., Salvi D., Seigneurin-Berny D., Court M., Moyet L., et al. AT_CHLORO: A comprehensive chloroplast proteome database with subplastidiallocalization and curated information on envelope proteins. Mol Cell Proteomics 2010, 9(6):1063-1084.
-
(2010)
Mol Cell Proteomics
, vol.9
, Issue.6
, pp. 1063-1084
-
-
Ferro, M.1
Brugiere, S.2
Salvi, D.3
Seigneurin-Berny, D.4
Court, M.5
Moyet, L.6
-
14
-
-
17444429670
-
Analysis of shotgun proteomics and RNA profiling data from Arabidopsis thaliana chloroplasts
-
Baginsky S., Kleffmann T., von Zychlinski A., Gruissem W. Analysis of shotgun proteomics and RNA profiling data from Arabidopsis thaliana chloroplasts. J Proteome Res 2005, 4:637-640.
-
(2005)
J Proteome Res
, vol.4
, pp. 637-640
-
-
Baginsky, S.1
Kleffmann, T.2
von Zychlinski, A.3
Gruissem, W.4
-
15
-
-
0141453021
-
Enzymes of glycolysis are functionally associated with the mitochondrion in Arabidopsis cells
-
Giege P., Heazlewood J.L., Roessner-Tunali U., Millar A.H., Fernie A.R., Leaver C.J., et al. Enzymes of glycolysis are functionally associated with the mitochondrion in Arabidopsis cells. Plant Cell 2003, 15:2140-2151.
-
(2003)
Plant Cell
, vol.15
, pp. 2140-2151
-
-
Giege, P.1
Heazlewood, J.L.2
Roessner-Tunali, U.3
Millar, A.H.4
Fernie, A.R.5
Leaver, C.J.6
-
16
-
-
71249157340
-
Chloroplast proteins without cleavable transit peptides: rare exceptions or a major constituent of the chloroplast proteome?
-
Armbruster U., Hertle A., Makarenko E., Zuhlke J., Pribil M., Dietzmann A., et al. Chloroplast proteins without cleavable transit peptides: rare exceptions or a major constituent of the chloroplast proteome?. Mol Plant 2009, 2:1325-1335.
-
(2009)
Mol Plant
, vol.2
, pp. 1325-1335
-
-
Armbruster, U.1
Hertle, A.2
Makarenko, E.3
Zuhlke, J.4
Pribil, M.5
Dietzmann, A.6
-
17
-
-
34247183702
-
Proteome dynamics during plastid differentiation in rice
-
Kleffmann T., von Zychlinski A., Russenberger D., Hirsch-Hoffmann M., Gehrig P., Gruissem W., et al. Proteome dynamics during plastid differentiation in rice. Plant Physiol 2007, 143:912-923.
-
(2007)
Plant Physiol
, vol.143
, pp. 912-923
-
-
Kleffmann, T.1
von Zychlinski, A.2
Russenberger, D.3
Hirsch-Hoffmann, M.4
Gehrig, P.5
Gruissem, W.6
-
18
-
-
57749094259
-
Arabidopsis nuclear-encoded plastid transit peptides contain multiple sequence subgroups with distinctive chloroplast-targeting sequence motifs
-
Lee D.W., Kim J.K., Lee S., Choi S., Kim S., Hwang I. Arabidopsis nuclear-encoded plastid transit peptides contain multiple sequence subgroups with distinctive chloroplast-targeting sequence motifs. Plant Cell 2008, 20:1603-1622.
-
(2008)
Plant Cell
, vol.20
, pp. 1603-1622
-
-
Lee, D.W.1
Kim, J.K.2
Lee, S.3
Choi, S.4
Kim, S.5
Hwang, I.6
-
19
-
-
16244398103
-
Mimicking cellular sorting improves prediction of subcellular localization
-
Nair R., Rost B. Mimicking cellular sorting improves prediction of subcellular localization. J Mol Biol 2005, 348:85-100.
-
(2005)
J Mol Biol
, vol.348
, pp. 85-100
-
-
Nair, R.1
Rost, B.2
-
20
-
-
0041733229
-
Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis
-
Froehlich J.E., Wilkerson C.G., Ray W.K., McAndrew R.S., Osteryoung K.W., Gage D.A., et al. Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis. J Proteome Res 2003, 2:413-425.
-
(2003)
J Proteome Res
, vol.2
, pp. 413-425
-
-
Froehlich, J.E.1
Wilkerson, C.G.2
Ray, W.K.3
McAndrew, R.S.4
Osteryoung, K.W.5
Gage, D.A.6
-
21
-
-
55549093447
-
Comparative proteomics of chloroplast envelopes from C3 and C4 plants reveals specific adaptations of the plastid envelope to C4 photosynthesis and candidate proteins required for maintaining C4 metabolite fluxes
-
Brautigam A., Hoffmann-Benning S., Weber A.P. Comparative proteomics of chloroplast envelopes from C3 and C4 plants reveals specific adaptations of the plastid envelope to C4 photosynthesis and candidate proteins required for maintaining C4 metabolite fluxes. Plant Physiol 2008, 148:568-579.
-
(2008)
Plant Physiol
, vol.148
, pp. 568-579
-
-
Brautigam, A.1
Hoffmann-Benning, S.2
Weber, A.P.3
-
22
-
-
28544447361
-
Evidence for a protein transported through the secretory pathway en route to the higher plant chloroplast
-
Villarejo A., Buren S., Larsson S., Dejardin A., Monne M., Rudhe C., et al. Evidence for a protein transported through the secretory pathway en route to the higher plant chloroplast. Nat Cell Biol 2005, 7:1124-1131.
-
(2005)
Nat Cell Biol
, vol.7
, pp. 1124-1131
-
-
Villarejo, A.1
Buren, S.2
Larsson, S.3
Dejardin, A.4
Monne, M.5
Rudhe, C.6
-
23
-
-
70949096336
-
The rice alpha-amylase glycoprotein is targeted from the Golgi apparatus through the secretory pathway to the plastids
-
Kitajima A., Asatsuma S., Okada H., Hamada Y., Kaneko K., Nanjo Y., et al. The rice alpha-amylase glycoprotein is targeted from the Golgi apparatus through the secretory pathway to the plastids. Plant Cell 2009, 21:2844-2858.
-
(2009)
Plant Cell
, vol.21
, pp. 2844-2858
-
-
Kitajima, A.1
Asatsuma, S.2
Okada, H.3
Hamada, Y.4
Kaneko, K.5
Nanjo, Y.6
-
24
-
-
0037033102
-
Non-canonical transit peptide for import into the chloroplast
-
Miras S., Salvi D., Ferro M., Grunwald D., Garin J., Joyard J., et al. Non-canonical transit peptide for import into the chloroplast. J Biol Chem 2002, 277:47770-47778.
-
(2002)
J Biol Chem
, vol.277
, pp. 47770-47778
-
-
Miras, S.1
Salvi, D.2
Ferro, M.3
Grunwald, D.4
Garin, J.5
Joyard, J.6
-
25
-
-
35748972640
-
Toc159- and Toc75-independent import of a transit sequence-less precursor into the inner envelope of chloroplasts
-
Miras S., Salvi D., Piette L., Seigneurin-Berny D., Grunwald D., Reinbothe C., et al. Toc159- and Toc75-independent import of a transit sequence-less precursor into the inner envelope of chloroplasts. J Biol Chem 2007, 282:29482-29492.
-
(2007)
J Biol Chem
, vol.282
, pp. 29482-29492
-
-
Miras, S.1
Salvi, D.2
Piette, L.3
Seigneurin-Berny, D.4
Grunwald, D.5
Reinbothe, C.6
-
26
-
-
33646236590
-
Mapping the Arabidopsis organelle proteome
-
Dunkley T.P., Hester S., Shadforth I.P., Runions J., Weimar T., Hanton S.L., et al. Mapping the Arabidopsis organelle proteome. Proc Natl Acad Sci USA 2006, 103:6518-6523.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 6518-6523
-
-
Dunkley, T.P.1
Hester, S.2
Shadforth, I.P.3
Runions, J.4
Weimar, T.5
Hanton, S.L.6
-
27
-
-
33646473345
-
A mammalian organelle map by protein correlation profiling
-
Foster L.J., de Hoog C.L., Zhang Y., Zhang Y., Xie X., Mootha V.K., et al. A mammalian organelle map by protein correlation profiling. Cell 2006, 125:187-199.
-
(2006)
Cell
, vol.125
, pp. 187-199
-
-
Foster, L.J.1
de Hoog, C.L.2
Zhang, Y.3
Zhang, Y.4
Xie, X.5
Mootha, V.K.6
-
28
-
-
24044498270
-
Proteome analysis of the rice etioplast: metabolic and regulatory networks and novel protein functions
-
von Zychlinski A., Kleffmann T., Krishnamurthy N., Sjolander K., Baginsky S., Gruissem W. Proteome analysis of the rice etioplast: metabolic and regulatory networks and novel protein functions. Mol Cell Proteomics 2005, 4:1072-1084.
-
(2005)
Mol Cell Proteomics
, vol.4
, pp. 1072-1084
-
-
von Zychlinski, A.1
Kleffmann, T.2
Krishnamurthy, N.3
Sjolander, K.4
Baginsky, S.5
Gruissem, W.6
-
29
-
-
35448934538
-
Free-flow electrophoresis for purification of plant mitochondria by surface charge
-
Eubel H., Lee C.P., Kuo J., Meyer E.H., Taylor N.L., Millar A.H. Free-flow electrophoresis for purification of plant mitochondria by surface charge. Plant J 2007, 52:583-594.
-
(2007)
Plant J
, vol.52
, pp. 583-594
-
-
Eubel, H.1
Lee, C.P.2
Kuo, J.3
Meyer, E.H.4
Taylor, N.L.5
Millar, A.H.6
-
30
-
-
33846085927
-
SUBA: the arabidopsis subcellular database
-
Heazlewood J.L., Verboom R.E., Tonti-Filippini J., Small I., Millar A.H. SUBA: the arabidopsis subcellular database. Nucleic Acids Res 2007, 35:D213-D218.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Heazlewood, J.L.1
Verboom, R.E.2
Tonti-Filippini, J.3
Small, I.4
Millar, A.H.5
-
31
-
-
66649127498
-
Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks
-
Reiland S., Messerli G., Baerenfaller K., Gerrits B., Endler A., Grossmann J., et al. Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks. Plant Physiol 2009, 150:889-903.
-
(2009)
Plant Physiol
, vol.150
, pp. 889-903
-
-
Reiland, S.1
Messerli, G.2
Baerenfaller, K.3
Gerrits, B.4
Endler, A.5
Grossmann, J.6
-
32
-
-
53349177756
-
Construction of a chloroplast protein interaction network and functional mining of photosynthetic proteins in Arabidopsis thaliana
-
Yu Q.B., Li G., Wang G., Sun J.C., Wang P.C., Wang C., et al. Construction of a chloroplast protein interaction network and functional mining of photosynthetic proteins in Arabidopsis thaliana. Cell Res 2008, 18:1007-1019.
-
(2008)
Cell Res
, vol.18
, pp. 1007-1019
-
-
Yu, Q.B.1
Li, G.2
Wang, G.3
Sun, J.C.4
Wang, P.C.5
Wang, C.6
-
33
-
-
71249130462
-
The chloroplast kinase network: new insights from large-scale phosphoproteome profiling
-
Baginsky S., Gruissem W. The chloroplast kinase network: new insights from large-scale phosphoproteome profiling. Mol Plant 2009, 2:1141-1153.
-
(2009)
Mol Plant
, vol.2
, pp. 1141-1153
-
-
Baginsky, S.1
Gruissem, W.2
-
34
-
-
58149193219
-
PPDB, the plant proteomics database at Cornell
-
Sun Q., Zybailov B., Majeran W., Friso G., Olinares P.D., van Wijk K.J. PPDB, the plant proteomics database at Cornell. Nucleic Acids Res 2009, 37:D969-D974.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Sun, Q.1
Zybailov, B.2
Majeran, W.3
Friso, G.4
Olinares, P.D.5
van Wijk, K.J.6
-
35
-
-
31644438575
-
The oligomeric stromal proteome of Arabidopsis thaliana chloroplasts
-
Peltier J.B., Cai Y., Sun Q., Zabrouskov V., Giacomelli L., Rudella A., et al. The oligomeric stromal proteome of Arabidopsis thaliana chloroplasts. Mol Cell Proteomics 2006, 5:114-133.
-
(2006)
Mol Cell Proteomics
, vol.5
, pp. 114-133
-
-
Peltier, J.B.1
Cai, Y.2
Sun, Q.3
Zabrouskov, V.4
Giacomelli, L.5
Rudella, A.6
-
36
-
-
33747046042
-
The chloroplast lumen and stromal proteomes of Arabidopsis thaliana show differential sensitivity to short- and long-term exposure to low temperature
-
Goulas E., Schubert M., Kieselbach T., Kleczkowski L.A., Gardestrom P., Schroder W., et al. The chloroplast lumen and stromal proteomes of Arabidopsis thaliana show differential sensitivity to short- and long-term exposure to low temperature. Plant J 2006, 47:720-734.
-
(2006)
Plant J
, vol.47
, pp. 720-734
-
-
Goulas, E.1
Schubert, M.2
Kieselbach, T.3
Kleczkowski, L.A.4
Gardestrom, P.5
Schroder, W.6
-
37
-
-
52549133856
-
A rapid approach for phenotype-screening and database independent detection of cSNP/protein polymorphism using mass accuracy precursor alignment
-
Hoehenwarter W., van Dongen J.T., Wienkoop S., Steinfath M., Hummel J., Erban A., et al. A rapid approach for phenotype-screening and database independent detection of cSNP/protein polymorphism using mass accuracy precursor alignment. Proteomics 2008, 8:4214-4225.
-
(2008)
Proteomics
, vol.8
, pp. 4214-4225
-
-
Hoehenwarter, W.1
van Dongen, J.T.2
Wienkoop, S.3
Steinfath, M.4
Hummel, J.5
Erban, A.6
-
38
-
-
77954297255
-
Comparative analysis of phytohormone-responsive phosphoproteins in Arabidopsis thaliana using TiO-phosphopeptide enrichment and mass accuracy precursor alignment
-
Chen Y., Hoehenwarter W., Weckwerth W. Comparative analysis of phytohormone-responsive phosphoproteins in Arabidopsis thaliana using TiO-phosphopeptide enrichment and mass accuracy precursor alignment. Plant J 2010, 63(1):1-17.
-
(2010)
Plant J
, vol.63
, Issue.1
, pp. 1-17
-
-
Chen, Y.1
Hoehenwarter, W.2
Weckwerth, W.3
-
39
-
-
55249096894
-
Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast
-
de Godoy L.M.F., Olsen J.V., Cox J., Nielsen M.L., Hubner N.C., Frohlich F., et al. Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast. Nature 2008, 455:1251-U60.
-
(2008)
Nature
, vol.455
-
-
de Godoy, L.M.F.1
Olsen, J.V.2
Cox, J.3
Nielsen, M.L.4
Hubner, N.C.5
Frohlich, F.6
-
40
-
-
33846165487
-
Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation
-
Lu P., Vogel C., Wang R., Yao X., Marcotte E.M. Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation. Nat Biotechnol 2007, 25:117-124.
-
(2007)
Nat Biotechnol
, vol.25
, pp. 117-124
-
-
Lu, P.1
Vogel, C.2
Wang, R.3
Yao, X.4
Marcotte, E.M.5
-
41
-
-
38649098761
-
Characterization of global yeast quantitative proteome data generated from the wild-type and glucose repression Saccharomyces cerevisiae strains: the comparison of two quantitative methods
-
Usaite R., Wohlschlegel J., Venable J.D., Park S.K., Nielsen J., Olsson L., et al. Characterization of global yeast quantitative proteome data generated from the wild-type and glucose repression Saccharomyces cerevisiae strains: the comparison of two quantitative methods. J Proteome Res 2008, 7:266-275.
-
(2008)
J Proteome Res
, vol.7
, pp. 266-275
-
-
Usaite, R.1
Wohlschlegel, J.2
Venable, J.D.3
Park, S.K.4
Nielsen, J.5
Olsson, L.6
-
42
-
-
68749094119
-
Full dynamic range proteome analysis of S. cerevisiae by targeted proteomics
-
Picotti P., Bodenmiller B., Mueller L.N., Domon B., Aebersold R. Full dynamic range proteome analysis of S. cerevisiae by targeted proteomics. Cell 2009, 138:795-806.
-
(2009)
Cell
, vol.138
, pp. 795-806
-
-
Picotti, P.1
Bodenmiller, B.2
Mueller, L.N.3
Domon, B.4
Aebersold, R.5
-
43
-
-
51749100872
-
Absolute quantification of Medicago truncatula sucrose synthase isoforms and N-metabolism enzymes in symbiotic root nodules and the detection of novel nodule phosphoproteins by mass spectrometry
-
Wienkoop S., Larrainzar E., Glinski M., Gonzalez E.M., Arrese-Igor C., Weckwerth W. Absolute quantification of Medicago truncatula sucrose synthase isoforms and N-metabolism enzymes in symbiotic root nodules and the detection of novel nodule phosphoproteins by mass spectrometry. J Exp Bot 2008, 59:3307-3315.
-
(2008)
J Exp Bot
, vol.59
, pp. 3307-3315
-
-
Wienkoop, S.1
Larrainzar, E.2
Glinski, M.3
Gonzalez, E.M.4
Arrese-Igor, C.5
Weckwerth, W.6
-
44
-
-
33646251130
-
Relative and absolute quantitative shotgun proteomics: targeting low-abundance proteins in Arabidopsis thaliana
-
Wienkoop S., Weckwerth W. Relative and absolute quantitative shotgun proteomics: targeting low-abundance proteins in Arabidopsis thaliana. J Exp Bot 2006, 57:1529-1535.
-
(2006)
J Exp Bot
, vol.57
, pp. 1529-1535
-
-
Wienkoop, S.1
Weckwerth, W.2
-
45
-
-
51249117296
-
If the antibody fails-a mass western approach
-
Lehmann U., Wienkoop S., Tschoep H., Weckwerth W. If the antibody fails-a mass western approach. Plant J 2008, 55:1039-1046.
-
(2008)
Plant J
, vol.55
, pp. 1039-1046
-
-
Lehmann, U.1
Wienkoop, S.2
Tschoep, H.3
Weckwerth, W.4
-
46
-
-
0037932398
-
Stable isotope labeling of phosphopeptides for multiparallel kinase target analysis and identification of phosphorylation sites
-
Glinski M., Romeis T., Witte C.P., Wienkoop S., Weckwerth W. Stable isotope labeling of phosphopeptides for multiparallel kinase target analysis and identification of phosphorylation sites. Rapid Commun Mass Spectrom 2003, 17:1579-1584.
-
(2003)
Rapid Commun Mass Spectrom
, vol.17
, pp. 1579-1584
-
-
Glinski, M.1
Romeis, T.2
Witte, C.P.3
Wienkoop, S.4
Weckwerth, W.5
-
47
-
-
72949114722
-
Carbon metabolism and bacteroid functioning are involved in the regulation of nitrogen fixation in Medicago truncatula under drought and recovery
-
Larrainzar E., Wienkoop S., Scherling C., Kempa S., Ladrera R., Arrese-Igor C., et al. Carbon metabolism and bacteroid functioning are involved in the regulation of nitrogen fixation in Medicago truncatula under drought and recovery. Mol Plant Microbe Interact 2009, 22:1565-1576.
-
(2009)
Mol Plant Microbe Interact
, vol.22
, pp. 1565-1576
-
-
Larrainzar, E.1
Wienkoop, S.2
Scherling, C.3
Kempa, S.4
Ladrera, R.5
Arrese-Igor, C.6
-
48
-
-
77952528150
-
Targeted proteomics for Chlamydomonas reinhardtii combined with rapid subcellular protein fractionation, metabolomics and metabolic flux analyses
-
Wienkoop S., Weiss J., May P., Kempa S., Irgang S., Recuenco-Munoz L., et al. Targeted proteomics for Chlamydomonas reinhardtii combined with rapid subcellular protein fractionation, metabolomics and metabolic flux analyses. Mol Biosyst 2010, 6(6):1018-1031.
-
(2010)
Mol Biosyst
, vol.6
, Issue.6
, pp. 1018-1031
-
-
Wienkoop, S.1
Weiss, J.2
May, P.3
Kempa, S.4
Irgang, S.5
Recuenco-Munoz, L.6
-
49
-
-
38149106625
-
Integration of metabolomics and proteomics in molecular plant physiology - coping with the complexity by data-dimensionality reduction
-
Weckwerth W. Integration of metabolomics and proteomics in molecular plant physiology - coping with the complexity by data-dimensionality reduction. Physiol Plant 2008, 132:176-189.
-
(2008)
Physiol Plant
, vol.132
, pp. 176-189
-
-
Weckwerth, W.1
-
50
-
-
52049100420
-
Metabolomics- and proteomics-assisted genome annotation and analysis of the draft metabolic network of Chlamydomonas reinhardtii
-
May P., Wienkoop S., Kempa S., Usadel B., Christian N., Rupprecht J., et al. Metabolomics- and proteomics-assisted genome annotation and analysis of the draft metabolic network of Chlamydomonas reinhardtii. Genetics 2008, 179:157-166.
-
(2008)
Genetics
, vol.179
, pp. 157-166
-
-
May, P.1
Wienkoop, S.2
Kempa, S.3
Usadel, B.4
Christian, N.5
Rupprecht, J.6
-
51
-
-
58549101102
-
Discovery and revision of Arabidopsis genes by proteogenomics
-
Castellana N.E., Payne S.H., Shen Z., Stanke M., Bafna V., Briggs S.P. Discovery and revision of Arabidopsis genes by proteogenomics. Proc Natl Acad Sci USA 2008, 105:21034-21038.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 21034-21038
-
-
Castellana, N.E.1
Payne, S.H.2
Shen, Z.3
Stanke, M.4
Bafna, V.5
Briggs, S.P.6
-
52
-
-
44249091879
-
Genome-scale proteomics reveals Arabidopsis thaliana gene models and proteome dynamics
-
Baerenfaller K., Grossmann J., Grobei M.A., Hull R., Hirsch-Hoffmann M., Yalovsky S., et al. Genome-scale proteomics reveals Arabidopsis thaliana gene models and proteome dynamics. Science 2008, 320:938-941.
-
(2008)
Science
, vol.320
, pp. 938-941
-
-
Baerenfaller, K.1
Grossmann, J.2
Grobei, M.A.3
Hull, R.4
Hirsch-Hoffmann, M.5
Yalovsky, S.6
-
53
-
-
57749103865
-
The transcript and metabolite networks affected by the two clades of Arabidopsis glucosinolate biosynthesis regulators
-
Malitsky S., Blum E., Less H., Venger I., Elbaz M., Morin S., et al. The transcript and metabolite networks affected by the two clades of Arabidopsis glucosinolate biosynthesis regulators. Plant Physiol 2008, 148:2021-2049.
-
(2008)
Plant Physiol
, vol.148
, pp. 2021-2049
-
-
Malitsky, S.1
Blum, E.2
Less, H.3
Venger, I.4
Elbaz, M.5
Morin, S.6
-
54
-
-
65249084959
-
AtMyb41 regulates transcriptional and metabolic responses to osmotic stress in Arabidopsis
-
Lippold F., Sanchez D.H., Musialak M., Schlereth A., Scheible W.R., Hincha D.K., et al. AtMyb41 regulates transcriptional and metabolic responses to osmotic stress in Arabidopsis. Plant Physiol 2009, 149:1761-1772.
-
(2009)
Plant Physiol
, vol.149
, pp. 1761-1772
-
-
Lippold, F.1
Sanchez, D.H.2
Musialak, M.3
Schlereth, A.4
Scheible, W.R.5
Hincha, D.K.6
-
55
-
-
66349124175
-
Impact of clock-associated Arabidopsis pseudo-response regulators in metabolic coordination
-
Fukushima A., Kusano M., Nakamichi N., Kobayashi M., Hayashi N., Sakakibara H., et al. Impact of clock-associated Arabidopsis pseudo-response regulators in metabolic coordination. Proc Natl Acad Sci USA 2009, 106:7251-7256.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 7251-7256
-
-
Fukushima, A.1
Kusano, M.2
Nakamichi, N.3
Kobayashi, M.4
Hayashi, N.5
Sakakibara, H.6
-
56
-
-
37249065495
-
Integrative profiling of metabolites and proteins: improving pattern recognition and biomarker selection for systems level approaches
-
Morgenthal K., Wienkoop S., Wolschin F., Weckwerth W. Integrative profiling of metabolites and proteins: improving pattern recognition and biomarker selection for systems level approaches. Methods Mol Biol 2007, 358:57-75.
-
(2007)
Methods Mol Biol
, vol.358
, pp. 57-75
-
-
Morgenthal, K.1
Wienkoop, S.2
Wolschin, F.3
Weckwerth, W.4
-
57
-
-
52649132380
-
Integration of metabolomic and proteomic phenotypes: analysis of data covariance dissects starch and RFO metabolism from low and high temperature compensation response in Arabidopsis thaliana
-
Wienkoop S., Morgenthal K., Wolschin F., Scholz M., Selbig J., Weckwerth W. Integration of metabolomic and proteomic phenotypes: analysis of data covariance dissects starch and RFO metabolism from low and high temperature compensation response in Arabidopsis thaliana. Mol Cell Proteomics 2008, 7:1725-1736.
-
(2008)
Mol Cell Proteomics
, vol.7
, pp. 1725-1736
-
-
Wienkoop, S.1
Morgenthal, K.2
Wolschin, F.3
Scholz, M.4
Selbig, J.5
Weckwerth, W.6
-
59
-
-
57749121603
-
Ascorbate peroxidase 1 plays a key role in the response of Arabidopsis thaliana to stress combination
-
Koussevitzky S., Suzuki N., Huntington S., Armijo L., Sha W., Cortes D., et al. Ascorbate peroxidase 1 plays a key role in the response of Arabidopsis thaliana to stress combination. J Biol Chem 2008, 283:34197-34203.
-
(2008)
J Biol Chem
, vol.283
, pp. 34197-34203
-
-
Koussevitzky, S.1
Suzuki, N.2
Huntington, S.3
Armijo, L.4
Sha, W.5
Cortes, D.6
-
60
-
-
34447637634
-
ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites
-
Hummel J., Niemann M., Wienkoop S., Schulze W., Steinhauser D., Selbig J., et al. ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites. BMC Bioinform 2007, 8:216.
-
(2007)
BMC Bioinform
, vol.8
, pp. 216
-
-
Hummel, J.1
Niemann, M.2
Wienkoop, S.3
Schulze, W.4
Steinhauser, D.5
Selbig, J.6
-
61
-
-
77955463487
-
Protein and gene model reference based on statistical modeling in k-partite graphs
-
Gerster S., Qwli E., Ahrens C.H., Bühlmann P. Protein and gene model reference based on statistical modeling in k-partite graphs. PNAS 2010, 107:12101-12106.
-
(2010)
PNAS
, vol.107
, pp. 12101-12106
-
-
Gerster, S.1
Qwli, E.2
Ahrens, C.H.3
Bühlmann, P.4
|