Amphitropic amphiantarctic disjunctions in Apiaceae subfamily Apioideae

Journal of Biogeography

Volumn 37, Issue 10, 2010, Pages 1977-1994

  Spalik, Krzysztof ^a   Piwczyński, Marcin ^b   Danderson, Clark A ^c   Kurzyna Młynik, Renata ^a   Bone, Tiffany S ^c,d   Downie, Stephen R ^c  

^a UNIVERSITY OF WARSAW   (Poland)

^b NICOLAUS COPERNICUS UNIVERSITY   (Poland)

^c UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

^d NATIONAL CENTER FOR AGRICULTURAL UTILIZATION RESEARCH   (United States)

Author keywords

Aciphylleae; Amphitropic amphiantarctic disjunctions; Apiaceae; Apium; Calibration; Chaerophyllum; Daucus; Lilaeopsis; Phylogeny; RDNA ITS

Indexed keywords

ADAPTIVE RADIATION; ANCESTRY; BAYESIAN ANALYSIS; CALIBRATION; CLADISTICS; DATA SET; DISPERSAL; DIVERGENCE; FOSSIL RECORD; HERB; MAXIMUM LIKELIHOOD ANALYSIS; MIGRATION ROUTE; MOLECULAR ANALYSIS; PALEOBOTANY; PHYLOGENY; PHYLOGEOGRAPHY; POLLEN; POPULATION DISTRIBUTION; SOUTHERN HEMISPHERE; TAXONOMY;

AUSTRALASIA; SOUTH AMERICA;

ACIPHYLLEAE; ACRONEMA; APIACEAE; APIALES; APIOIDEAE; APIUM; CHAEROPHYLLUM; DAUCUS; LILAEOPSIS;

EID: 77957077442     PISSN: 03050270     EISSN: 13652699     Source Type: Journal    
DOI: 10.1111/j.1365-2699.2010.02334.x     Document Type: Article

References (95)

1. Affolter JM. A monograph of the genus Lilaeopsis (Umbelliferae). Systematic Botany Monographs 1985, 6:1-140.
2. Akaike H. A new look at the statistical model identification. IEEE Transactions on Automatic Control 1974, 19:716-723.
3. Anguita F, Hernán F. The Canary Islands origin: a unifying model. Journal of Volcanology and Geothermal Research 2000, 103:1-26.
4. Bleeker W, Weber-Sparenberg C, Hurka H. Chloroplast DNA variation and biogeography in the genus Rorippa Scop. (Brassicaceae). Plant Biology 2002a, 4:104-111.
5. Bleeker W, Franzke A, Pollmann K, Brown AHD, Hurka H. Phylogeny and biogeography of southern hemisphere high-mountain Cardamine species (Brassicaceae). Australian Systematic Botany 2002b, 15:575-581.
6. Brandley MC, Schmitz A, Reeder TW. Partitioned Bayesian analyses, partition choice, and the phylogenetic relationships of scincid lizards. Systematic Biology 2005, 54:373-390.
7. Bremer K, Friis EM, Bremer B. Molecular phylogenetic dating of asterid flowering plants shows Early Cretaceous diversification. Systematic Biology 2004, 53:496-505.
8. Britton NL, Brown A. An illustrated flora of the northern United States, Canada and the British Possessions 1913, C. Scribner, New York
9. Calviño CI, Tilney PM, van Wyk BE, Downie SR. A molecular phylogenetic study of southern African Apiaceae. American Journal of Botany 2006, 93:1828-1847.
10. Calviño CI, Martinez SG, Downie SR. Morphology and biogeography of Apiaceae subfamily Saniculoideae as inferred by phylogenetic analysis of molecular data. American Journal of Botany 2008, 95:196-214.
11. Chung K-F. Inclusion of the South Pacific alpine genus Oreomyrrhis (Apiaceae) in Chaerophyllum based on nuclear and chloroplast DNA sequences. Systematic Botany 2007, 32:671-681.
12. Chung K-F, Peng C-I, Downie SR, Spalik K, Schaal BA. Molecular systematics of the trans-Pacific alpine genus Oreomyrrhis (Apiaceae): phylogenetic affinities and biogeographic implications. American Journal of Botany 2005, 92:2054-2071.
13. Crisp MD, Cook LG, Steane D. Radiation of the Australian flora: what can comparisons of molecular phylogenies across multiple taxa tell us about the evolution of diversity in present-day communities? Philosophical Transactions of the Royal Society B: Biological Sciences 2004, 359:1551-1571.
14. Dawson JW. Relationships of the New Zealand Umbelliferae. The biology and chemistry of the Umbelliferae 1971, 43-61. Heywood VH. ed. by, Academic Press, London
15. Donoghue MJ, Moore BR. Toward an integrative historical biogeography. Integrative and Comparative Biology 2003, 43:261-270.
16. Downie SR, Katz-Downie DS. Phylogenetic analysis of chloroplast rps16 intron sequences reveals relationships within the woody southern African Apiaceae subfamily Apioideae. Canadian Journal of Botany 1999, 77:1120-1135.
17. Downie SR, Katz-Downie DS, Spalik K. A phylogeny of Apiaceae tribe Scandiceae: evidence from nuclear ribosomal DNA internal transcribed spacer sequences. American Journal of Botany 2000a, 87:76-95.
18. Downie SR, Katz-Downie DS, Watson MF. A phylogeny of the flowering plant family Apiaceae based on chloroplast DNA rpl16 and rpoC1 intron sequences: towards a suprageneric classification of subfamily Apioideae. American Journal of Botany 2000b, 87:273-292.
19. Downie SR, Katz-Downie DS, Sun F-J, Lee C-S. Phylogeny and biogeography of Apiaceae tribe Oenantheae inferred from nuclear rDNA ITS and cpDNA psbI-5'trnK(UUU) sequences, with emphasis on the North American Endemics clade. Botany 2008, 86:1039-1064.
20. Downie SR, Spalik K, Katz-Downie DS, Reduron JP. Major clades within Apiaceae subfamily Apioideae as inferred by phylogenetic analysis of nrDNA ITS sequences. Plant Diversity and Evolution (formerly Botanische Jahrbücher) 128.
21. Drummond AJ, Rambaut A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology 2007, 7:214.
22. Drummond AJ, Ho SYW, Phillis MJ, Rambaut A. Relaxed phylogenetics and dating with confidence. PLoS Biology 2006, 4:e88.
23. Ellison NW, Liston A, Steiner JJ, Williams WM, Taylor NL. Molecular phylogenetics of the clover genus (Trifolium- Leguminosae). Molecular Phylogenetics and Evolution 2006, 39:688-705.
24. Escudero M, Valcárcel V, Vargas P, Luceño M. Evolution in Carex L. sect. Spirostachyae (Cyperaceae): a molecular and cytogenetic approach. Organisms, Diversity & Evolution 2008, 7:271-291.
25. Felsenstein J. PHYLIP (Phylogeny Inference Package) version 3.6 2005, http://evolution.genetics.washington.edu/phylip.html, Distributed by the author, Department of Genome Sciences, University of Washington, Seattle, WA,
26. Galley C, Linder HP. Geographical affinities of the Cape flora, South Africa. Journal of Biogeography 2006, 33:236-250.
27. Gardner R. A variant of the native sea-celery, Apium prostratum (Umbelliferae). Journal of the Auckland Botanical Society 2000, 55:81.
28. Glenny D. A revision of the genus Gentianella (Gentianaceae) in New Zealand. New Zealand Journal of Botany 2004, 42:361-530.
29. Gruas-Cavagnetto C, Cerceau-Larrival M-T. Apports des pollens fossiles d'Ombellifères à la connaissance paléoécologique et paléoclimatique de l'Eocène français. Review of Palaeobotany and Palynology 1983/1984, 40:317-345.
30. Guindon S, Gascuel O. A simple, fast and accurate method to estimate large phylogenies by maximum likelihood. Systematic Biology 2003, 52:696-704.
31. Gussarova G, Popp M, Vitek E, Brochmann C. Molecular phylogeny and biogeography of the bipolar Euphrasia (Orobanchaceae): recent radiations in an old genus. Molecular Phylogenetics and Evolution 2008, 48:444-460.
32. von Hagen KB, Kadereit JW. The phylogeny of Gentianella (Gentianaceae) and its colonization of the southern hemisphere as revealed by nuclear and chloroplast DNA sequence variation. Organisms, Diversity & Evolution 2001, 1:61-79.
33. Hardway TM, Spalik K, Watson MF, Katz-Downie DS, Downie SR. Circumscription of Apiaceae tribe Oenantheae. South African Journal of Botany 2004, 70:393-406.
34. Hill AW. Lilaeopsis in Tasmania and New Zealand. Kew Bulletin 1929, 1929:119-121.
35. Ho SYW. Calibrating molecular estimates of substitution rates and divergence times in birds. Journal of Avian Biology 2007, 38:409-414.
36. Hoggard RK, Kores PJ, Molvray M, Hoggard GD, Broughton DA. Molecular systematics and biogeography of the amphibious genus Litorella (Plantaginaceae). American Journal of Botany 2003, 90:429-435.
37. Johow F. Flora de las Islas de Juan Fernández 1896, Cervantes, Santiago de Chile
38. Kass RE, Raftery AE. Bayes factors. Journal of the American Statistical Association 1995, 90:773-795.
39. Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG. Clustal W and Clustal X version 2.0. Bioinformatics 2007, 23:2947-2948.
40. Linder HP. Plant species radiations: where, when, why? Philosophical Transactions of the Royal Society B: Biological Sciences 2008, 363:3097-3105.
41. Maddison WP, Maddison DR. Mesquite: a modular system for evolutionary analysis. Version 2.5 2008, http://mesquiteproject.org, Available at:
42. Martinez S. Apiaceae. Catalogo de las plantas vasculares de la Republica Argentina II 1999, 46-64. Zuloaga FOMorrone O. ed. by, Monographs in Systematic Botany Vol. 74, Missouri Botanical Garden, St Louis, MO
43. Mathias ME, Constance L. The genus Oreomyrrhis (Umbelliferae), a problem in South Pacific distribution. University of California Publications in Botany 1955, 27:347-416.
44. Maticorena C, Quezada M. Catalogo de la flora vascular de Chile. Gayana, Botanica 1985, 42:1-155.
45. Mitchell AD, Webb CJ, Wagstaff SJ. Phylogenetic relationships of species of Gingidia and related genera (Apiaceae, subfamily Apioideae). New Zealand Journal of Botany 1998, 36:417-424.
46. Mukherjee PK, Constance L. Umbelliferae (Apiaceae) of India 1993, American Institute of Indian Studies and Oxford & IBH Publishing, New Delhi
47. Mummenhoff K, Brüggemann H, Bowman JL. Chloroplast DNA phylogeny and biogeography of Lepidium (Brassicaceae). American Journal of Botany 2001, 88:2051-2063.
48. Muñoz J, Felicísimo Á.M., Cabezas F, Burgaz AR, Martínez I. Wind as a long-distance dispersal vehicle in the Southern Hemisphere. Science 2004, 304:1144-1147.
49. Nicolas AN, Plunkett GM. The demise of subfamily Hydrocotyloideae (Apiaceae) and the re-alignment of its genera across the entire order Apiales. Molecular Phylogenetics and Evolution 2009, 53:134-151.
50. Paun O, Lehnebach C, Johansson JT, Lockhart PJ, Hörandl E. Phylogenetic relationships and biogeography of Ranunculus and allied genera (Ranunculaceae) in the Mediterranean region and in the European Alpine System. Taxon 2005, 54:911-930.
51. Petersen G, Affolter JM. A new species of Lilaeopsis (Apiaceae) from Mauritius. Novon 1999, 9:92-94.
52. Plunkett GM, Pimenov MG, Reduron JP, Kljuykov EV, Lee BY, van Wyk BE, Tilney PM, Watson MF, Ostroumova TA, Spalik K, Hart JM, Henwood MJ, Webb CJ, Pu FT, Mitchell AD, Muckensturm B. Apiaceae. The families and genera of vascular plants Kubitzky K, ed. by, Springer, Berlin
53. Posada D. ModelTest: phylogenetic model averaging. Molecular Biology and Evolution 2008, 25:1253-1256.
54. Posada D, Crandall KA. Modeltest: testing the model of DNA substitution. Bioinformatics 1998, 14:817-818.
55. de Queiroz A. The resurrection of oceanic dispersal in historical biogeography. Trends in Ecology and Evolution 2005, 20:68-73.
56. Radford EA, Watson MF, Preston J. Phylogenetic relationships of species of Aciphylla (Apiaceae, subfamily Apioideae) and related genera using molecular, morphological, and combined data sets. New Zealand Journal of Botany 2001, 39:183-208.
57. Rambaut A. FigTree. Tree figure drawing tool version 1.2.2 2009, http://tree.bio.ed.ac.uk, Institute of Evolutionary Biology, University of Edinburgh,
58. Raven PH. Amphitropical relationships in the floras of North and South America. The Quarterly Review of Biology 1963, 38:151-177.
59. Raven PH. Evolution of the subalpine and alpine plant groups in New Zealand. New Zealand Journal of Botany 1973, 11:177-200.
60. Raynal J. Le genre Lilaeopsis (Ombellifères) à Madagascar. Adansonia 1977, 17:151-154.
61. Ree RH, Smith SA. Maximum likelihood inference of geographic range evolution by dispersal, local extinction, and cladogenesis. Systematic Biology 2008, 57:4-14.
62. Ronquist F. DIVA version 1.1 1996, http://www.ebc.uu.se/systzoo/research/diva/diva.html, Computer program and manual available from Uppsala University,
63. Ronquist F. Dispersal-vicariance analysis: a new approach to the quantification of historical biogeography. Systematic Biology 1997, 46:195-203.
64. Ronquist F, Huelsenbeck JP. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19:1572-1574.
65. Rønsted N, Chase MW, Albach DC, Bello MA. Phylogenetic relationships within Plantago (Plantaginaceae): evidence from nuclear ribosomal ITS and plastid trnL-F sequence data. Botanical Journal of the Linnean Society 2002, 139:323-338.
66. Sáenz Laín C. Research on Daucus L. (Umbelliferae). Anales Jardín Botánico de Madrid 1981, 37:481-534.
67. Sang T, Crawford DJ, Kim S-C, Stuessy TF. Radiation of the endemic genus Dendroseris (Asteraceae) on the Juan Fernandez Islands: evidence from sequences of the ITS regions of nuclear ribosomal DNA. American Journal of Botany 1994, 81:1494-1501.
68. Sanmartín I, Ronquist F. Southern Hemisphere biogeography inferred by event-based models: plant versus animal patterns. Systematic Biology 2004, 53:216-243.
69. Sanmartín I, Enghoff H, Ronquist F. Patterns of animal dispersal, vicariance, and diversification in the Holarctic. Biological Journal of the Linnean Society 2001, 73:345-390.
70. Schischkin BK. Chaerophyllum L. Flora SSSR 1950, 94-117. Schischkin BK. Vol. 16 (ed. by, Izdatelstvo Akademii Nauk SSSR, Moskva, Leningrad
71. Schuettpelz E, Hoot SB. Phylogeny and biogeography of Caltha (Ranunculaceae) based on chloroplast and nuclear DNA sequences. American Journal of Botany 2004, 91:247-253.
72. Schuettpelz E, Hoot SB, Samuel R, Ehrendorfer F. Multiple origins of Southern Hemisphere Anemone (Ranunculaceae) based on plastid and nuclear sequence data. Plant Systematics and Evolution 2002, 231:143-151.
73. She M, Pu F, Pan Z, Watson MF, Cannon JFM, Holmes-Smith I, Kljuykov EV, Phillippe LR, Pimenov MG. Apiaceae (Umbelliferae). Flora of China 2005, 1-205. Vol. 14 (ed. by, Missouri Botanical Garden, St Louis, MO
74. Short PS. Apium L. sect. Apium (Umbelliferae) in Australasia. Journal of the Adelaide Botanic Garden 1979, 1:205-235.
75. Smissen RD, Garnock-Jones PJ, Chambers GK. Phylogenetic analysis of ITS sequences suggests a Pliocene origin for the bipolar distribution of Scleranthus (Caryophyllaceae). Australian Systematic Botany 2003, 16:301-315.
76. Spalik K, Downie SR. The utility of morphological characters for inferring phylogeny in Scandiceae subtribe Scandicinae (Apiaceae). Annals of the Missouri Botanical Garden 2001, 88:270-301.
77. Spalik K, Downie SR. The evolutionary history of Sium sensu lato (Apiaceae): dispersal, vicariance, and domestication as inferred from ITS rDNA phylogeny. American Journal of Botany 2006, 93:747-761.
78. Spalik K, Downie SR. Intercontinental disjunctions in Cryptotaenia (Apiaceae, Oenantheae): an appraisal using molecular data. Journal of Biogeography 2007, 34:2039-2054.
79. Spalik K, Downie SR, Watson MF. Generic delimitations within the Sium alliance (Apiaceae tribe Oenantheae) inferred from cpDNA rps16-5'trnK(UUU) and nrDNA ITS sequences. Taxon 2009, 58:735-748.
80. Swofford DL. PAUP*. Phylogenetic analysis using parsimony (*and other methods). Version 4 1998, Sinauer Associates, Sunderland, MA
81. Thomé OW. Flora von Deutschland, Österreich und der Schweiz 1886, F. E. Köhler, Gera
82. Tiffney BH, Manchester SR. The use of geological and paleontological evidence in evaluating plant phylogeographic hypotheses in the Northern Hemisphere Tertiary. International Journal of Plant Sciences 2001, 162:S3-S17.
83. Townsend CC. Umbelliferae. Flora of tropical East Africa 1989, 1-127. Polhill RM. ed. by, AA Balkema, Rotterdam
84. Vijverberg K, Mes THM, Bachmann K. Chloroplast DNA evidence for the evolution of Microseris (Asteraceae) in Australia and New Zealand after long-distance dispersal from western North America. American Journal of Botany 1999, 86:1448-1463.
85. Wagstaff SJ, Bayly MJ, Garnock-Jones PJ, Albach DC. Classification, origin, and diversification of the New Zealand hebes (Scrophulariaceae). Annals of the Missouri Botanical Garden 2002, 89:38-63.
86. Wen J, Zimmer EA. Phylogeny and biogeography of Panax L. (the ginseng genus, Araliaceae): inferences from ITS sequences of nuclear ribosomal DNA. Molecular Phylogenetics and Evolution 1996, 6:167-177.
87. Wen J, Lowry Walck JL, Yoo KO. Phylogenetic and biogeographic diversification in Osmorhiza (Apiaceae). Annals of the Missouri Botanical Garden 2002, 89:414-428.
88. White TJ, Bruns T, Lee S, Taylor J. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. PCR protocols: a guide to methods and applications 1990, 315-322. Innis MA, Gelfand DH, Sninsky JJ, White TJ. ed. by, Academic Press, San Diego, CA
89. Winkworth RC, Wagstaff SJ, Glenny D, Lockhart PJ. Plant dispersal N.E.W.S. from New Zealand. Trends in Ecology and Evolution 2002a, 17:514-520.
90. Winkworth RC, Grau J, Robertson AW, Lockhart PJ. The origin and evolution of the genus Myosotis L. (Boraginaceae). Molecular Phylogenetics and Evolution 2002b, 24:180-193.
91. Winkworth RC, Wagstaff SJ, Glenny D, Lockhart PJ. Evolution of the New Zealand mountain flora: origins, diversification and dispersal. Organisms, Diversity & Evolution 2005, 5:237-247.
92. van Wyk BE, Tilney PM. Diversity of Apiaceae in Africa. South African Journal of Botany 2004, 70:433-445.
93. Yang Z. Computational molecular evolution 2006, Oxford University Press, New York
94. Yokoyama J, Suzuki M, Iwatsuki K, Hasebe M. Molecular phylogeny of Coriaria, with special emphasis on the disjunct distribution. Molecular Phylogenetics and Evolution 2000, 14:11-19.
95. Yuan Y-M, Wohlhauser S, Möller M, Klackenberg J, Callmander MW, Küpfer P. Phylogeny and biogeography of Exacum (Gentianaceae): a disjunctive distribution in the Indian Ocean resulted from long distance dispersal and extensive radiation. Systematic Biology 2005, 54:21-34.