Molecular phylogeny of Coriaria, with special emphasis on the disjunct distribution

Molecular Phylogenetics and Evolution

Volumn 14, Issue 1, 2000, Pages 11-19

  Yokoyama, Jun ^a   Suzuki, Mitsuo ^a   Iwatsuki, Kunio ^b   Hasebe, Mitsuyasu ^c  

^a TOHOKU UNIVERSITY   (Japan)

^b RIKKYO UNIVERSITY   (Japan)

^c NATIONAL INSTITUTE FOR BASIC BIOLOGY   (Japan)

Author keywords

Angiosperm; Biogeography; Coriaria; matK; Molecular systematics; rbcL

Indexed keywords

1,5 BISPHOSPHATE CARBOXYLASE OXYGENASE; CENTRAL AMERICA; CHILE; CORIARIA; GENETIC DIVERSITY; GENETIC DRIFT; GEOGRAPHIC DISTRIBUTION; MATURASE K GENE; NEW ZEALAND; PAPUA NEW GUINEA; PHYLOGENY; RBCL GENE; SOUTH AMERICA;

EID: 0033936738     PISSN: 10557903     EISSN: None     Source Type: Journal    
DOI: 10.1006/mpev.1999.0672     Document Type: Article

References (57)

1. Airy Shaw H. K. J. C. Willis' A Dictionary of the Flowering Plants and Ferns. 1973;Cambridge Univ. Press, Cambridge.
2. Albert V. A., Chase M. W., Mishler B. D. Character-state weighting for cladistic analysis of protein-coding DNA sequences. Ann. Missouri Bot. Gard. 80:1993;752-766.
3. Allan H. H. Coriariaceae. Moore L. B. Flora of New Zealand. 1961;300-305 Government printer, Wellington.
4. Axelrod D. I. The evolution of flowering plants. Tax S. The Evolution of Life. 1960;227-305 Univ. of Chicago Press, Chicago.
5. Bohm B. A., Ornduff R. Leaf flavonoids and ordinal affinities of Coriariaceae. Syst. Bot. 6:1981;15-26.
6. Bousquet J., Strauss S. H., Doerksen A. H., Price R. A. Extensive variation in evolutionary rate of rbcL gene sequences among seed plants. Proc. Natl. Acad. Sci. USA. 89:1992;7844-7848.
7. Bremer K. The limits of amino acid sequence data in angiosperm phylogenetic reconstruction. Evolution. 42:1988;795-803.
8. Briggs J. C. Biogeography and Plate Tectonics. 1987;Elsevier.
9. Chase M. W., Soltis D. E., Olmstead R. G., Morgan D., Les D. H., Mishler B. D., Duvall M. R., Price R. A., Hills H. G., Qiu Y.-L., Kron K. A., Rettig J. H., Conti E., Palmer J. D., Manhart J. R., Sytsma K. J., Michaels H. J., Kress W. J., Karol K. G., Clark W. D., Hedroen M., Gaut B. S., Jansen R. K., Kim K.-J., Wimpee C. F., Smith J. F., Furnier G. R., Strauss S. H., Xiang Q.-Y., Plunkett G. M., Soltis P. S., Swensen S. M., Williams S. E., Gadek P. A., Quinn C. J., Eguiarte L. E., Golenberg E., Learn G. H. Jr., Graham S. W., Barrett S. C., Dayanandan S., Albert V. A. Phylogenetics of seed plants: An analysis of nucleotide sequences from the plastid gene rbcL. Ann. Missouri Bot. Gard. 80:1993;528-580.
10. Chaney R. W. Tertiary centers and migration routes. Ecol. Monogr. 17:1947;140-148.
11. Corner E. J. H. The Seeds of Dicotyledons. 1976;Cambridge Univ. Press, Cambridge.
12. Croizat L. Manual of Phytogeography: An Account of Plant Dispersal throughout the World. 1952;Junk, The Hague.
13. Cronquist A. Coriariaceae. An Integrated System of Classification of Flowering Plants. 1981;Columbia Univ. Press, New York. p. 136-139.
14. Dahlgren R. M. T. A revised system of classification of the angiosperms. Bot. J. Linn. Soc. 80:1980;91-124.
15. Felsenstein J. Evolutionary trees from DNA sequences: A maximum likelihood approach. J. Mol. Evol. 17:1981;368-376.
16. Felsenstein J. Confidence limits on phylogenies: An approach using the bootstrap. Evolution. 39:1985;783-791.
17. Felsenstein, J. 1995, PHYLIP: Phylogeny Inference Package, version 3.572c, Univ. of Washington, Seattle.
18. Garg M. Pollen morphology and systematic position of Coriaria. Phytomorphology. 30:1981;5-10.
19. Good R. D. O. The geography of the genus Coriaria. New Phytol. 29:1930;170-198.
20. Gregor H.-J. Seeds of the genus Coriaria Linne (Coriariaceae) in the European Neogene. Tert. Res. 3:1980;61-69.
21. Hasebe M., Iwatsuki K. Adiantum capillus-veneris chloroplast DNA clone bank: Useful heterologous probes in the systematics of the leptosporangiate ferns. Am. Fern J. 80:1990;20-25.
22. Hasebe M., Omori T., Nakazawa M., Sano T., Kato M., Iwatsuki K. RbcL gene sequences provide evidence for the evolutionary lineages of leptosporangiate ferns. Proc. Natl. Acad. Sci. USA. 91:1994;5730-5734.
23. Hasebe M., Ando T., Iwatsuki K. Intrageneric relationships of maple trees based on the chloroplast DNA restriction fragment length polymorphisms. J. Plant Res. 111:1998;441-451.
24. Hotta M. History and Geography of Plants. 1974;Sanseido, Tokyo.
25. Hughes N. F. The Enigma of Angiosperm Origins. 1994;Cambridge Univ. Press, Cambridge.
26. Ina Y. New methods for estimating the numbers of synonymous and nonsynonymous substitutions. J. Mol. Evol. 40:1995;190-226.
27. Johnson L. A., Soltis D. E. Phylogenetic inference in Saxifragaceae sensu stricto and Gilia (Polemoniaceae) using matK sequences. Ann. Missouri Bot. Gard. 82:1995;149-175.
28. Kimura M. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:1980;110-120.
29. Kobayashi T., Shikama T. The climatic history of the Far East. Nairn A. E. M. Descriptive Palaeoclimatology. 1961;292-306 Interscience, New York.
30. Li W.-H. So, what about the molecular clock hypothesis. Curr. Opin. Genet. Dev. 3:1993;896-901.
31. Maddison D. R. Discovery and importance of multiple islands of most-parsimonious trees. Syst. Zool. 40:1991;315-328.
32. Melville R. Continental drift, Mesozoic continents and the migrations of the angiosperms. Nature. 211:1966;116-120.
33. Melville R. Vicarious plant distributions and paleogeography of the pacific region. Nelson G., Rosen D. E. Vicariance Biogeography. 1981;413-435 Columbia Univ. Press.
34. Mickevich M. F., Farris J. S. The implications of congruence in Menidia. Syst. Zool. 30:1981;351-370.
35. Muller J. Fossil pollen records of extant angiosperms. Bot. Rev. 47:1981;1-142.
36. Olsen G., Matsuda H., Hagstrom R., Overbeek R. fastDNAml: A tool for construction of phylogenetic trees of DNA sequences using maximum likelihood. CABIOS. 10:1994;41-48.
37. Ooi K., Endo Y., Yokoyama J., Murakami N. Useful primer designs to amplify DNA fragments of the plastid gene matK from angiosperm plants. J. Jap. Bot. 70:1995;328-331.
38. Ozaki K. Late Miocene and Pliocene Floras in Central Honshu. 1991;Kanagawa Pref. Mus. Yokohama.
39. Praglowski J. Coriariaceae. Erdtman G. World Pollen Flora. 1970;15-22 Scandinavian Univ. Books, Copenhagen.
40. Saitou N., Nei M. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:1987;406-425.
41. de Saporta G. Etudes sur la vegetation du Sud-Est de la France a l'epoque tertiare, 2 (3). Ann. Sci. Nat. Bot., Ser. 5. 3:1865;212-217.
42. Scholz H. Sapindales. Melchior H. A. Engler's Syllabus der Pflanzenfamilien. 1964;277-288 Borntraeger.
43. Schuster R. M. Plate tectonics and its bearing on the geographical origin and dispersal of angiosperms. Beck C. B. Origin and Early Evolution of Angiosperms. 1976;48-138 Columbia Univ. Press.
44. Sharma V. K. Floral morphology, anatomy, and embryology of Coriaria nepalensis Wall. with a discussion on the interrelationships of the family Coriariaceae. Phytomorphology. 18:1968;143-153.
45. Shinozaki K., Ohme M., Tanaka M., Wakasugi T., Hayashida N., Matsubayashi T., Zaita N., Chunwongse J., Obokata J., Yamaguchi-Shinozaki K., Ohta C., Torazawa K., Meng B. Y., Sugita M., Deno H., Kamagashira T., Yamada K., Kusuda J., Takaiwa F., Kato A., Tohdoh N., Shimada H., Sugiura M. The complete nucleotide sequence of the tobacco chloroplast genome: Its gene organization and expression. EMBO J. 5:1986;2043-2049.
46. Skog L. E. The genus Coriaria (Coriariaceae) in the Western Hemisphere. Rhodora. 74:1972;242-253.
47. Smith A. G., Briden J. C. Mesozoic and Cenozoic Paleocontinental Maps. 1977;Cambridge Univ. Press, Cambridge.
48. Steele K. P., Vilgalys R. Phylogenetic analyses of Polemoniaceae using nucleotide sequences of the plastid gene matK. Syst. Bot. 19:1994;126-142.
49. Lys(UUU) gene contains a 2.5-kilo base-pair intron: An open reading frame and a conserved boundary sequence in the intron. Proc. Natl. Acad. Sci. USA. 82:1985;3557-3561.
50. Swensen S. M., Mullin B. C., Chase M. W. Phylogenetic affinities of Datiscaceae based on an analysis of nucleotide sequences from the plastid rbcL gene. Syst. Bot. 19:1994;157-168.
51. Swensen S. M. The evolution of actinorhizal symbioses: Evidence for multiple origins of the symbiotic association. Am. J. Bot. 83:1996;1503-1512.
52. Swofford, D. L. 1993, Phylogenetic analysis using parsimony, version 3.1.1, Illinois Natural History Survey, Champaign, IL.
53. Takhtajan A. L. Outline of the classification of flowering plants (Magnoliophyta). Bot. Rev. 46:1980;225-359.
54. Thorne R. F. Proposed new realignments in the angiosperms. Nord. J. Bot. 3:1983;85-117.
55. Woldstedt P. Die Allgemeinen Erscheinungen des Eiszeitalters. 1954;Ferdinand Enke, Stuttgart.
56. Wolfe K. H., Gouy M., Yang Y.-W., Sharp P. M., Li W.-H. Date of the monocot-dicot divergence estimated from chloroplast DNA sequence data. Proc. Natl. Acad. Sci. USA. 86:1989;6201-6205.
57. Wu C.-I., Li W.-H. Evidence for higher rates of nucleotide substitution in rodents than in man. Proc. Natl. Acad. Sci. USA. 82:1985;1741-1745.