메뉴 건너뛰기




Volumn 37, Issue 7, 2010, Pages 3081-3087

Prediction and validation of conservative microRNAs of Solanum tuberosum L.

Author keywords

miRNA; Prediction; Solanum tuberosum; Stem loop real time RT PCR

Indexed keywords

MICRORNA; MICRORNA 159; MICRORNA 162; MICRORNA 164; MICRORNA 166; MICRORNA 167; MICRORNA 168; MICRORNA 171; RNA 18S; UNCLASSIFIED DRUG;

EID: 77956966608     PISSN: 03014851     EISSN: 15734978     Source Type: Journal    
DOI: 10.1007/s11033-009-9881-z     Document Type: Article
Times cited : (36)

References (33)
  • 1
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: Genomics, Biogenesis, Mechanism, and Function
    • DOI 10.1016/S0092-8674(04)00045-5
    • DP Bartel 2004 MicroRNAs: genomics, biogenesis, mechanism, and function Cell 116 281 297 1:CAS:528:DC%2BD2cXhtVals7o%3D 10.1016/S0092-8674(04)00045-5 14744438 (Pubitemid 38167318)
    • (2004) Cell , vol.116 , Issue.2 , pp. 281-297
    • Bartel, D.P.1
  • 2
    • 0037162702 scopus 로고    scopus 로고
    • Prediction of plant microRNA targets
    • DOI 10.1016/S0092-8674(02)00863-2
    • MW Rhoades BJ Reinhart LP Lim CB Burge B Bartel DP Bartel 2002 Prediction of plant microRNA targets Cell 110 513 520 1:CAS:528:DC%2BD38Xmslyjt7s%3D 10.1016/S0092-8674(02)00863-2 12202040 (Pubitemid 35232294)
    • (2002) Cell , vol.110 , Issue.4 , pp. 513-520
    • Rhoades, M.W.1    Reinhart, B.J.2    Lim, L.P.3    Burge, C.B.4    Bartel, B.5    Bartel, D.P.6
  • 3
    • 0042346346 scopus 로고    scopus 로고
    • miSSING LINKS: miRNAs and plant development
    • DOI 10.1016/S0959-437X(03)00081-9
    • C Hunter RS Poethig 2003 miSSING LINKS: miRNAs and plant development Curr Opin Genet Dev 13 372 378 1:CAS:528:DC%2BD3sXlvVGjsL0%3D 10.1016/S0959-437X(03) 00081-9 12888010 (Pubitemid 36897800)
    • (2003) Current Opinion in Genetics and Development , vol.13 , Issue.4 , pp. 372-378
    • Hunter, C.1    Poethig, R.S.2
  • 4
    • 7744223490 scopus 로고    scopus 로고
    • MicroRNA binding sites in Arabidopsis class III HD-ZIP mRNAs are required for methylation of the template chromosome
    • DOI 10.1016/j.devcel.2004.10.003, PII S153458070400365X
    • N Bao KW Lye MK Barton 2004 MicroRNA binding sites in Arabidopsis class III HD-ZIP mRNAs are required for methylation of the template chromosome Dev Cell 7 653 662 1:CAS:528:DC%2BD2cXhtVWgsLnL 10.1016/j.devcel.2004.10.003 15525527 (Pubitemid 39462686)
    • (2004) Developmental Cell , vol.7 , Issue.5 , pp. 653-662
    • Bao, N.1    Lye, K.-W.2    Barton, M.K.3
  • 5
    • 4644311028 scopus 로고    scopus 로고
    • Class III HD-Zip gene regulation, the golden fleece of ARGONAUTE activity?
    • DOI 10.1002/bies.20103
    • JL Bowman 2004 Class III HD-Zip gene regulation, the golden fleece of ARGONAUTE activity? Bioessays 26 938 942 1:CAS:528:DC%2BD2cXnvFWlt7w%3D 10.1002/bies.20103 15351964 (Pubitemid 39273067)
    • (2004) BioEssays , vol.26 , Issue.9 , pp. 938-942
    • Bowman, J.L.1
  • 6
    • 0142072737 scopus 로고    scopus 로고
    • Radial Patterning of Arabidopsis Shoots by Class III HD-ZIP and KANADI Genes
    • DOI 10.1016/j.cub.2003.09.035
    • JF Emery SK Floyd J Alvarez Y Eshed NP Hawker A Izhaki SF Baum JL Bowman 2003 Radial patterning of Arabidopsis shoots by class III HD-ZIP and KANADI genes Curr Biol 13 1768 1774 1:CAS:528:DC%2BD3sXot12itbg%3D 10.1016/j.cub.2003. 09.035 14561401 (Pubitemid 37269117)
    • (2003) Current Biology , vol.13 , Issue.20 , pp. 1768-1774
    • Emery, J.F.1    Floyd, S.K.2    Alvarez, J.3    Eshed, Y.4    Hawker, N.P.5    Izhaki, A.6    Baum, S.F.7    Bowman, J.L.8
  • 7
    • 1542317414 scopus 로고    scopus 로고
    • microRNA-mediated repression of rolled leaf1 specifies maize leaf polarity
    • DOI 10.1038/nature02363
    • MT Juarez JS Kui J Thomas BA Heller MC Timmermans 2004 microRNA-mediated repression of rolled leaf1 specifies maize leaf polarity Nature 428 84 88 1:CAS:528:DC%2BD2cXhslCnsL8%3D 10.1038/nature02363 14999285 (Pubitemid 38332362)
    • (2004) Nature , vol.428 , Issue.6978 , pp. 84-88
    • Juarez, M.T.1    Kui, J.S.2    Thomas, J.3    Heller, B.A.4    Timmermans, M.C.P.5
  • 8
    • 20144387641 scopus 로고    scopus 로고
    • MicroRNA-Directed cleavage of ATHB15 mRNA regulates vascular development in Arabidopsis inflorescence stems
    • 1:CAS:528:DC%2BD2MXjtlOnt70%3D 10.1111/j.1365-313X.2005.02354.x 15773855
    • J Kim JH Jung JL Reyes YS Kim SY Kim KS Chung JA Kim M Lee Y Lee V Narry Kim NH Chua CM Park 2005 microRNA-Directed cleavage of ATHB15 mRNA regulates vascular development in Arabidopsis inflorescence stems Plant J 42 84 94 1:CAS:528:DC%2BD2MXjtlOnt70%3D 10.1111/j.1365-313X.2005.02354.x 15773855
    • (2005) Plant J , vol.42 , pp. 84-94
    • Kim, J.1    Jung, J.H.2    Reyes, J.L.3    Kim, Y.S.4    Kim, S.Y.5    Chung, K.S.6    Kim, J.A.7    Lee, M.8    Lee, Y.9    Narry Kim, V.10    Chua, N.H.11    Park, C.M.12
  • 9
    • 4444363152 scopus 로고    scopus 로고
    • MicroRNA control of PHABULOSA in leaf development: Importance of pairing to the microRNA 5′ region
    • DOI 10.1038/sj.emboj.7600340
    • AC Mallory BJ Reinhart MW Jones-Rhoades G Tang PD Zamore MK Barton DP Bartel 2004 MicroRNA control of PHABULOSA in leaf development: importance of pairing to the microRNA 5′ region EMBO J 23 3356 3364 1:CAS:528: DC%2BD2cXmslWhtL8%3D 10.1038/sj.emboj.7600340 15282547 (Pubitemid 39209159)
    • (2004) EMBO Journal , vol.23 , Issue.16 , pp. 3356-3364
    • Mallory, A.C.1    Reinhart, B.J.2    Jones-Rhoades, M.W.3    Tang, G.4    Zamore, P.D.5    Barton, M.K.6    Bartel, D.P.7
  • 10
    • 2342449276 scopus 로고    scopus 로고
    • Amphivasal vascular bundle 1, a gain-of-function mutation of the IFL1/REV gene, is associated with alterations in the polarity of leaves, stems and carpels
    • DOI 10.1093/pcp/pch051
    • R Zhong ZH Ye 2004 Amphivasal vascular bundle 1, a gain-of-function mutation of the IFL1/REV gene, is associated with alterations in the polarity of leaves, stems and carpels Plant Cell Physiol 45 369 385 1:CAS:528: DC%2BD2cXjsFKhtLw%3D 10.1093/pcp/pch051 15111711 (Pubitemid 38592363)
    • (2004) Plant and Cell Physiology , vol.45 , Issue.4 , pp. 369-385
    • Zhong, R.1    Ye, Z.-H.2
  • 11
    • 0242361521 scopus 로고    scopus 로고
    • Regulation of Flowering Time and Floral Organ Identity by a MicroRNA and lts APETALA2-Like Target Genes
    • DOI 10.1105/tpc.016238
    • MJ Aukerman H Sakai 2003 Regulation of flowering time and floral organ identity by a MicroRNA and its APETALA2-like target genes Plant Cell 15 2730 2741 1:CAS:528:DC%2BD3sXpt1OrurY%3D 10.1105/tpc.016238 14555699 (Pubitemid 37470672)
    • (2003) Plant Cell , vol.15 , Issue.11 , pp. 2730-2741
    • Aukerman, M.J.1    Sakai, H.2
  • 12
    • 1642366133 scopus 로고    scopus 로고
    • A MicroRNA as a Translational Repressor of APETALA2 in Arabidopsis Flower Development
    • DOI 10.1126/science.1088060
    • X Chen 2004 A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development Science 303 2022 2025 1:CAS:528: DC%2BD2cXisVGlt7g%3D 10.1126/science.1088060 12893888 (Pubitemid 38393278)
    • (2004) Science , vol.303 , Issue.5666 , pp. 2022-2025
    • Chen, X.1
  • 13
    • 24944510549 scopus 로고    scopus 로고
    • MicroRNA directs mRNA cleavage of the transcription factor NAC1 to downregulate auxin signals for Arabidopsis lateral root development
    • DOI 10.1105/tpc.105.030841
    • HS Guo Q Xie JF Fei NH Chua 2005 MicroRNA directs mRNA cleavage of the transcription factor NAC1 to downregulate auxin signals for arabidopsis lateral root development Plant Cell 17 1376 1386 1:CAS:528:DC%2BD2MXksVKksrk%3D 10.1105/tpc.105.030841 15829603 (Pubitemid 43138191)
    • (2005) Plant Cell , vol.17 , Issue.5 , pp. 1376-1386
    • Guo, H.-S.1    Xie, Q.2    Fei, J.-F.3    Chua, N.-H.4
  • 14
    • 4444275405 scopus 로고    scopus 로고
    • MicroRNA regulation of the CUC genes is required for boundary size control in Arabidopsis meristems
    • DOI 10.1242/dev.01320
    • P Laufs A Peaucelle H Morin J Traas 2004 MicroRNA regulation of the CUC genes is required for boundary size control in Arabidopsis meristems Development 131 4311 4322 1:CAS:528:DC%2BD2cXotVyisr0%3D 10.1242/dev.01320 15294871 (Pubitemid 39276198)
    • (2004) Development , vol.131 , Issue.17 , pp. 4311-4322
    • Laufs, P.1    Peaucelle, A.2    Morin, H.3    Traas, J.4
  • 15
    • 2942697259 scopus 로고    scopus 로고
    • MicroRNA regulation of NAC-domain targets is required for proper formation and separation of adjacent embryonic, vegetative, and floral organs
    • DOI 10.1016/j.cub.2004.06.022, PII S0960982204004269
    • AC Mallory DV Dugas DP Bartel B Bartel 2004 MicroRNA regulation of NAC-domain targets is required for proper formation and separation of adjacent embryonic, vegetative, and floral organs Curr Biol 14 1035 1046 1:CAS:528:DC%2BD2cXltVOgtLg%3D 10.1016/j.cub.2004.06.022 15202996 (Pubitemid 38791565)
    • (2004) Current Biology , vol.14 , Issue.12 , pp. 1035-1046
    • Mallory, A.C.1    Dugas, D.V.2    Bartel, D.P.3    Bartel, B.4
  • 16
    • 1842484780 scopus 로고    scopus 로고
    • Ancient microRNA target sequences in plants
    • DOI 10.1038/428485a
    • SK Floyd JL Bowman 2004 Gene regulation: ancient microRNA target sequences in plants Nature 428 485 486 1:CAS:528:DC%2BD2cXis1Gksr0%3D 10.1038/428485a 15057819 (Pubitemid 38480526)
    • (2004) Nature , vol.428 , Issue.6982 , pp. 485-486
    • Floyd, S.K.1    Bowman, J.L.2
  • 17
    • 4243111895 scopus 로고    scopus 로고
    • Modulation of floral development by a gibberellin-regulated microRNA
    • DOI 10.1242/dev.01206
    • P Achard A Herr DC Baulcombe NP Harberd 2004 Modulation of floral development by a gibberellin-regulated microRNA Development 131 3357 3365 1:CAS:528:DC%2BD2cXmvVKmsb8%3D 10.1242/dev.01206 15226253 (Pubitemid 39139882)
    • (2004) Development , vol.131 , Issue.14 , pp. 3357-3365
    • Achard, P.1    Herr, A.2    Baulcombe, D.C.3    Harberd, N.P.4
  • 19
    • 56649120500 scopus 로고    scopus 로고
    • Identification of soybean microRNAs and their targets
    • 1:CAS:528:DC%2BD1cXhtl2qur%2FJ 10.1007/s00425-008-0818-x 18815805
    • B Zhang X Pan EJ Stellwag 2008 Identification of soybean microRNAs and their targets Planta 229 161 182 1:CAS:528:DC%2BD1cXhtl2qur%2FJ 10.1007/s00425-008-0818-x 18815805
    • (2008) Planta , vol.229 , pp. 161-182
    • Zhang, B.1    Pan, X.2    Stellwag, E.J.3
  • 20
    • 58049192548 scopus 로고    scopus 로고
    • Genomic resources and tools for gene function analysis in potato
    • 19107214
    • GJ Bryan I Hein 2008 Genomic resources and tools for gene function analysis in potato Int J Plant Genomics 2008 216513 19107214
    • (2008) Int J Plant Genomics , vol.2008 , pp. 216513
    • Bryan, G.J.1    Hein, I.2
  • 21
    • 26944498633 scopus 로고    scopus 로고
    • Prediction and validation of microRNAs and their targets
    • DOI 10.1016/j.febslet.2005.09.040, PII S0014579305011543, RNAi: Mechanisms, Biology and Applications
    • I Bentwich 2005 Prediction and validation of microRNAs and their targets FEBS Lett 579 5904 5910 1:CAS:528:DC%2BD2MXhtFKmtbjE 10.1016/j.febslet.2005.09. 040 16214134 (Pubitemid 41484136)
    • (2005) FEBS Letters , vol.579 , Issue.26 , pp. 5904-5910
    • Bentwich, I.1
  • 23
    • 63649146109 scopus 로고    scopus 로고
    • The quantification of tomato microRNAs response to viral infection by stem-loop real-time RT-PCR
    • 1:CAS:528:DC%2BD1MXktlGjsbc%3D 10.1016/j.gene.2009.01.017 19374024
    • J Feng K Wang X Liu S Chen J Chen 2009 The quantification of tomato microRNAs response to viral infection by stem-loop real-time RT-PCR Gene 437 14 21 1:CAS:528:DC%2BD1MXktlGjsbc%3D 10.1016/j.gene.2009.01.017 19374024
    • (2009) Gene , vol.437 , pp. 14-21
    • Feng, J.1    Wang, K.2    Liu, X.3    Chen, S.4    Chen, J.5
  • 24
    • 57749175110 scopus 로고    scopus 로고
    • Computational identification of 48 potato microRNAs and their targets
    • Zhang W, Luo Y, Gong X, Zeng W, Li S (2009) Computational identification of 48 potato microRNAs and their targets. Comput Biol Chem 33:84-93
    • (2009) Comput Biol Chem , vol.33 , pp. 84-93
    • Zhang, W.1    Luo, Y.2    Gong, X.3    Zeng, W.4    Li, S.5
  • 25
    • 33846218312 scopus 로고    scopus 로고
    • Functional diversity of miRNA in plants
    • DOI 10.1016/j.plantsci.2006.10.009, PII S0168945206002986
    • T Yang L Xue L An 2007 Functional diversity of miRNA in plants Plant Sci 172 423 432 1:CAS:528:DC%2BD2sXnslGhsw%3D%3D 10.1016/j.plantsci.2006.10.009 (Pubitemid 46109073)
    • (2007) Plant Science , vol.172 , Issue.3 , pp. 423-432
    • Yang, T.1    Xue, L.2    An, L.3
  • 26
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • DOI 10.1093/nar/25.17.3389
    • SF Altschul TL Madden AA Schaffer J Zhang Z Zhang W Miller DJ Lipman 1997 Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucleic Acids Res 25 3389 3402 1:CAS:528:DyaK2sXlvFyhu7w%3D 10.1093/nar/25.17.3389 9254694 (Pubitemid 27359211)
    • (1997) Nucleic Acids Research , vol.25 , Issue.17 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3    Zhang, J.4    Zhang, Z.5    Miller, W.6    Lipman, D.J.7
  • 27
    • 41949100147 scopus 로고    scopus 로고
    • Identification of conserved microRNAs and their target genes in tomato (Lycopersicon esculentum)
    • 1:CAS:528:DC%2BD1cXkvVegurY%3D 10.1016/j.gene.2008.02.007 18387754
    • Z Yin C Li X Han F Shen 2008 Identification of conserved microRNAs and their target genes in tomato (Lycopersicon esculentum) Gene 414 60 66 1:CAS:528:DC%2BD1cXkvVegurY%3D 10.1016/j.gene.2008.02.007 18387754
    • (2008) Gene , vol.414 , pp. 60-66
    • Yin, Z.1    Li, C.2    Han, X.3    Shen, F.4
  • 30
    • 22144457368 scopus 로고    scopus 로고
    • Antiquity of microRNAs and their targets in land plants
    • 1:CAS:528:DC%2BD2MXlsVygu7o%3D 10.1105/tpc.105.032185 15849273
    • MJ Axtell DP Bartel 2005 Antiquity of microRNAs and their targets in land plants Plant Cell 17 1658 1673 1:CAS:528:DC%2BD2MXlsVygu7o%3D 10.1105/tpc.105.032185 15849273
    • (2005) Plant Cell , vol.17 , pp. 1658-1673
    • Axtell, M.J.1    Bartel, D.P.2
  • 31
    • 33646830110 scopus 로고    scopus 로고
    • Conservation and divergence of plant microRNA genes
    • DOI 10.1111/j.1365-313X.2006.02697.x
    • B Zhang X Pan CH Cannon GP Cobb TA Anderson 2006 Conservation and divergence of plant microRNA genes Plant J 46 243 259 1:CAS:528: DC%2BD28XksVWntrk%3D 10.1111/j.1365-313X.2006.02697.x 16623887 (Pubitemid 43773564)
    • (2006) Plant Journal , vol.46 , Issue.2 , pp. 243-259
    • Zhang, B.1    Pan, X.2    Cannon, C.H.3    Cobb, G.P.4    Anderson, T.A.5
  • 33
    • 0037320231 scopus 로고    scopus 로고
    • P1/HC-Pro, a viral suppressor of RNA silencing, interferes with Arabidopsis development and miRNA function
    • DOI 10.1016/S1534-5807(03)00025-X, PII S153458070300025X
    • KD Kasschau Z Xie E Allen C Llave EJ Chapman KA Krizan JC Carrington 2003 P1/HC-Pro, a viral suppressor of RNA silencing, interferes with Arabidopsis development and miRNA unction Dev Cell 4 205 217 1:CAS:528:DC%2BD3sXhsFKntr0%3D 10.1016/S1534-5807(03)00025-X 12586064 (Pubitemid 36221797)
    • (2003) Developmental Cell , vol.4 , Issue.2 , pp. 205-217
    • Kasschau, K.D.1    Xie, Z.2    Allen, E.3    Llave, C.4    Chapman, E.J.5    Krizan, K.A.6    Carrington, J.C.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.