Experimental evidence that source genetic variation drives pathogen emergence

Proceedings of the Royal Society B: Biological Sciences

Volumn 277, Issue 1697, 2010, Pages 3113-3121

  Dennehy, John J ^a   Friedenberg, Nicholas A ^b   McBride, Robert C ^c   Holt, Robert D ^d   Turner, Paul E ^c  

^a CITY UNIVERSITY OF NEW YORK   (United States)

^b STONY BROOK UNIVERSITY   (United States)

^c YALE UNIVERSITY   (United States)

^d UNIVERSITY OF FLORIDA   (United States)

Author keywords

Emergence; Experimental evolution; Host shift; Migration; Pseudomonas; Virus

Indexed keywords

ADAPTIVE RADIATION; BACTERIOPHAGE; BACTERIUM; EMERGENCE; EXPERIMENTAL STUDY; FITNESS; GENETIC VARIATION; GENOTYPE; HABITAT TYPE; HOST SELECTION; HYPOTHESIS TESTING; IMMIGRATION; MUTATION; NATURAL SELECTION; PATHOGENICITY; PERFORMANCE ASSESSMENT; POPULATION DECLINE; POPULATION STRUCTURE; RANGE EXPANSION; TRADE-OFF;

BACTERIA (MICROORGANISMS); PSEUDOMONAS;

EID: 77956934819     PISSN: 09628452     EISSN: 14712970     Source Type: Journal    
DOI: 10.1098/rspb.2010.0342     Document Type: Conference Paper

References (43)

1. André, J. B. & Day, T. 2005 The effect of disease life history on the evolutionary emergence of novel pathogens. Proc. R. Soc. B 272, 1949-1956. (doi:10.1098/rspb.2005.3170) (Pubitemid 41414647)
2. Andre, J. B. & Hochberg, M. E. 2005 Virulence evolution in emerging infectious diseases. Evolution 59, 1406-1412.
3. Antia, R., Regoes, R. R., Koella, J. C. & Bergstrom, C. T. 2003 The role of evolution in the emergence of infectious diseases. Nature 426, 658-661. (doi:10.1038/nature02104) (Pubitemid 38009372)
4. Antonovics, J. 1976 Nature of limits to natural selection. Ann. Mo. Bot. Gard. 63, 224-247. (doi:10.2307/2395303)
5. Chao, L. 1990 Fitness of RNA virus decreased by Muller's Ratchet. Nature 348, 454-455. (doi:10.1038/348454a0)
6. Chattopadhyay, S., Feldgarden, M., Weissman, S. J., Dykhuizen, D. E., van Belle, G. & Sokurenko, E. V. 2007 Haplotype diversity in 'source-sink' dynamics of Escherichia coli urovirulence. J. Mol. Evol. 64, 204-214. (doi:10.1007/s00239-006-0063-5) (Pubitemid 46147044)
7. Cooper, V. & Lenski, R. 2000 The population genetics of ecological specialization in evolving Escherichia coli populations. Nature 407, 736-739. (doi:10.1038/35037572)
8. Crill, W. D., Wichman, H. A. & Bull, J. J. 2000 Evolutionary reversals during viral adaptation to alternating hosts. Genetics 154, 27-37.
9. Cuevas, J. M., Moya, A. & Elena, S. F. 2003 Evolution of RNA virus in spatially structured heterogeneous environments. J. Evol. Biol. 16, 456-466. (doi:10.1046/ j.1420-9101.2003.00547.x) (Pubitemid 36567976)
10. Dennehy, J. J. 2009 Bacteriophages as model organisms for virus emergence research. Trends Microbiol. 17, 450-457. (doi:10.1016/j.tim.2009.07.006)
11. Dennehy, J. J., Friedenberg, N. A., Holt, R. D. & Turner, P. E. 2006 Viral ecology and the maintenance of novel host use. Am. Nat. 167, 429-439.
12. Duffy, S., Turner, P. E. & Burch, C. L. 2006 Pleiotropic costs of niche expansion in the RNA bacteriophage F6. Genetics 172, 751-757. (doi:10.1534/genetics.105. 051136) (Pubitemid 43345415)
13. Duffy, S., Burch, C. L. & Turner, P. E. 2007 Evolution of host specificity drives reproductive isolation among RNA viruses. Evolution 61, 2614-2622. (doi:10.1111/j. 1558-5646.2007.00226.x) (Pubitemid 350045557)
14. Ferris, M. T., Joyce, P. & Burch, C. L. 2007 High frequency of mutations that expand the host range of an RNA virus. Genetics 176, 1013-1022. (doi:10.1534/genetics.106. 064634) (Pubitemid 46961103)
15. Froissart, R., Wilke, C. O., Montville, R., Remold, S. K., Chao, L. & Turner, P. E. 2004 Co-infection weakens selection against epistatic mutations in RNA viruses. Genetics 168, 9-19. (doi:10.1534/genetics.104.030205) (Pubitemid 39346575)
16. Gomulkiewicz, R., Holt, R. D. & Barfield, M. 1999 The effects of density dependence and immigration on local adaptation and niche evolution in a black-hole sink environment. Theor. Popul. Biol. 55, 283-296. (doi:10. 1006/tpbi.1998.1405)
17. Holt, R. D. 1985 Population dynamics in 2-patch environments-some anomalous consequences of an optimal habitat distribution. Theor. Popul. Biol. 28, 181-208. (doi:10.1016/0040-5809(85)90027-9)
18. Holt, R. D. & Gomulkiewicz, R. 1997 How does immigration influence local adaptation? A reexamination of a familiar paradigm. Am. Nat. 149, 563-572.
19. Holt, R. D. & Hochberg, M. E. (eds) 2002 Virulence on the edge: a source-sink perspective. In Adaptive dynamics of infectious diseases: in pursuit of virulence management. (eds U. Dieckmann, J. A. J. Metz, M. W. Sabelis & K. Sigmund), pp. 197-209. Cambridge, UK: Cambridge University Press.
20. Holt, R. D., Dobson, A. P., Begon, M., Bowers, R. G. & Schauber, E. M. 2003a Parasite establishment in host communities. Ecol. Lett. 6, 837-842. (doi:10.1046/j. 1461-0248.2003.00501.x) (Pubitemid 37105914)
21. Holt, R. D., Gomulkiewicz, R. & Barfield, M. 2003b The phenomology of niche evolution via quantitive traits in a 'black-hole' sink. Proc. R. Soc. Lond. B 270, 215-224. (doi:10.1098/rspb.2002.2219) (Pubitemid 36143376)
22. Holt, R. D., Barfield, M. & Gomulkiewicz, R. 2004 Temporal variation can facilitate niche evolution in harsh sink environments. Am. Nat. 164, 187-200.
23. Holt, R. D., Barfield, M. & Gomulkiewicz, R. 2005 Theories of niche conservatism and evolution: could exotic species be potential tests? In Species invasions: insights into ecology, evolution, and biogeography (eds J. S. D. Sax & S. D. Gaines), pp. 259-290. Sunderland, MA: Sinauer Associates.
24. Kawecki, T. J. 2000 Adaptation to marginal habitats: contrasting influence of the dispersal rate on the fate of alleles with small and large effects. Proc. R. Soc. Lond. B 267, 1315-1320. (doi:10.1098/rspb.2000.1144)
25. Kawecki, T. J. & Ebert, D. 2004 Conceptual issues in local adaptation. Ecol. Lett. 7, 1225-1241. (doi:10.1111/j. 1461-0248.2004.00684.x)
26. Kirkpatrick, M. & Barton, N. H. 1997 Evolution of a species' range. Am. Nat. 150, 1-23.
27. Lenski, R. E., Rose, M. R., Simpson, S. C. & Tadler, S. C. 1991 Long-term experimental evolution in Escherichia coli. I. Adaptation and divergence during 2,000 generations. Am. Nat. 138, 1315-1341.
28. Lenormand, T. 2002 Gene flow and the limits to natural selection. Trends Ecol. Evol. 17, 183-189. (doi:10.1016/ S0169-5347(02)02497-7)
29. Mindich, L. 2004 Packaging, replication and recombination of the segmented genomes of bacteriophage F6 and its relatives. Virus Res. 101, 83-92. (doi:10.1016/j.virusres. 2003.12.008) (Pubitemid 38317111)
30. Miralles, R., Moya, A. & Elena, S. F. 1999 Effect of population patchiness and migration rates on the adaptation and divergence of vesicular stomatitis virus quasispecies populations. J. Gen. Virol. 80, 2051-2059.
31. Perron, G. G., Gonzalez, A. & Buckling, A. 2007 Source-sink dynamics shape the evolution of antibiotic resistance and its pleiotropic fitness cost. Proc. R. Soc. B 274, 2351-2356. (doi:10.1098/rspb.2007.0640) (Pubitemid 47372890)
32. Plowright, R. K., Sokolow, S. H., Gorman, M. E., Daszak, P. & Foley, J. E. 2008 Causal inference in disease ecology: investigating ecological drivers of disease emergence. Front. Ecol. Environ. 6, 420-429. (doi:10.1890/070086)
33. Power, A. G. & Mitchell, C. E. 2004 Pathogen spillover in disease epidemics. Am. Nat. 164, S79-S89.
34. Pulliam, H. R. 1988 Sources, sinks and population regulation. Am. Nat. 132, 652-661.
35. Rambaut, A., Pybus, O. G., Nelson, M. I., Viboud, C., Taubenberger, J. K. & Holmes, E. C. 2008 The genomic and epidemiological dynamics of human influenza A virus. Nature 453, 615-619. (doi:10.1038/nature06945) (Pubitemid 351769300)
36. Ronce, O. & Kirkpatrick, M. 2001 When sources become sinks: migrational meltdown in heterogeneous habitats. Evolution 55, 1520-1531.
37. Russell, C. A. et al. 2008 The global circulation of seasonal influenza A (H3N2) viruses. Science 320, 340-346. (doi:10.1126/science.1154137) (Pubitemid 351555652)
38. Semancik, J. S., Vidaver, A. K. & Van Etten, J. L. 1973 Characterization of a segmented double helical RNA from bacteriophage phi6. J. Mol. Biol. 78, 617. (doi:10. 1016/0022-2836(73)90283-0)
39. Sokurenko, E. V., Gomulkiewicz, R. & Dykhuizen, D. E. 2006 Opinion-source-sink dynamics of virulence evolution. Nat. Rev. Microbiol. 4, 548-555. (doi:10.1038/ nrmicro1446)
40. Turner, P. E. & Chao, L. 1998 Sex and the evolution of intrahost competition in RNA virus phi 6. Genetics 150, 523-532.
41. Turner, P. E., Burch, C. L., Hanley, K. A. & Chao, L. 1999 Hybrid frequencies confirm limit to coinfection in the RNA bacteriophage phi 6. J. Virol. 73, 2420-2424.
42. Vidaver, A. K., Koski, R. K. & Vanetten, J. L. 1973 Bacterio-phage F6-lipid containing virus of Pseudomonas phaseolicola. J. Virol. 11, 799-805.
43. Yates, A., Antia, R. & Regoes, R. R. 2006 How do pathogen evolution and host heterogeneity interact in disease emergence? Proc. R. Soc. B 273, 3075-3083. (doi:10.1098/ rspb.2006.3681)