Evolution of host specificity drives reproductive isolation among RNA viruses

Evolution

Volumn 61, Issue 11, 2007, Pages 2614-2622

  Duffy, Siobain ^a,b   Burch, Christina L ^b   Turner, Paul E ^a  

^a YALE UNIVERSITY   (United States)

^b UNIVERSITY OF NORTH CAROLINA   (United States)

Author keywords

Assortative mating; Bacteriophage; Experimental evolution; Host shift; Parapatry

Indexed keywords

ADAPTATION; ALLOPATRY; ASSORTATIVE MATING; BACTERIOPHAGE; HOST RANGE; HOST SPECIFICITY; INSECT; LABORATORY METHOD; NATURAL SELECTION; PARAPATRY; PLEIOTROPY; REPRODUCTIVE ISOLATION; RNA;

ADAPTATION; ANIMAL; ARTICLE; CLASSIFICATION; ECOSYSTEM; EVOLUTION; GENETICS; GENOME; HOST PARASITE INTERACTION; INSECT; PARASITOLOGY; PHENOTYPE; PHYSIOLOGY; PLANT; POPULATION DYNAMICS; REPRODUCTION; RNA PHAGE; RNA VIRUS; SPECIES DIFFERENCE;

ADAPTATION, PHYSIOLOGICAL; ANIMALS; ECOSYSTEM; EVOLUTION; GENOME; HOST-PARASITE INTERACTIONS; INSECTS; PHENOTYPE; PLANTS; POPULATION DYNAMICS; REPRODUCTION; RNA PHAGES; RNA VIRUSES; SPECIES SPECIFICITY;

HEXAPODA; PSEUDOMONAS PHAGE PHI-6; RNA VIRUSES;

EID: 35748942245     PISSN: 00143820     EISSN: 15585646     Source Type: Journal    
DOI: 10.1111/j.1558-5646.2007.00226.x     Document Type: Article

References (62)

1. Aytay, S., and I. T. Schulze. 1991. Single amino acid substitutions in the hemagglutinin can alter the host range and receptor binding properties of H1 strains of Influenza A virus. J. Virol. 65 : 3022 3028.
2. Baranowski, E., C. M. Ruiz-Jarabo, and E. Domingo. 2001. Evolution of cell recognition by viruses. Science. 292 : 1102 1105.
3. Bennett, A. F., K. M. Dao, and R. E. Lenski. 1990. Rapid evolution in response to high-temperature selection. Nature. 346 : 79 81.
4. Bull, J. J., M. R. Badgett, H. A. Wichman, J. P. Huelsenbeck, D. M. Hillis, A. Gulati, C. Ho, and I. J. Molineux. 1997. Exceptional convergent evolution in a virus. Genetics 147 : 1497 1507.
5. Burch, C. L., and L. Chao. 2000. Evolvability of an RNA virus is determined by its mutational neighborhood. Nature. 406 : 625 628.
6. Chao, L., T. Tran, and C. Matthews. 1992. Muller's ratchet and the advantages of sex in the RNA virus φ6. Evolution. 46 : 289 299.
7. Coyne, J. A., and H. A. Orr. 2004. Speciation. Sinauer Associates, Sunderland, MA.
8. Crill, W. D., H. A. Wichmann, and J. J. Bull. 2000. Evolutionary reversals during viral adaptation to alternating hosts. Genetics. 154 : 27 37.
9. Cuevas, J. M., A. Moya, and S. F. Elena. 2003. Evolution of RNA virus in spatially structured heterogeneous environments. J. Evol. Biol. 16 : 456 466.
10. Darwin, C. 1859. On the origin of species by means of natural selection, or the preservation of favoured races in the struggle for life. John Murray, London.
11. Delbrück, M., and W. T. Bailey Jr. 1946. Induced mutations in bacterial viruses. Cold Spring Harb. Symp. Quant. Biol. 11 : 33 37.
12. Dobzhansky, T. 1937. Genetics and the origin of species. Columbia Univ. Press, New York.
13. Doebeli, M., U. Dieckmann, J. A. J. Metz, and D. Tautz. 2005. What we have also learned: adaptive speciation is theoretically possible. Evolution. 59 : 691 695.
14. Drake, J. W. 1993. Rates of spontaneous mutation among RNA viruses. Proc. Natl. Acad. Sci. USA 90 : 4171 4175.
15. Drummond, A. J., O. G. Pybus, A. Rambaut, R. Forsberg, and A. G. Rodrigo. 2003. Measurably evolving populations. Trends Ecol. Evol. 18 : 481 488.
16. Duffy, S., P. E. Turner, and C. L. Burch. 2006. Pleiotropic costs of niche expansion in the RNA bacteriophage φ6. Genetics. 172 : 1 7.
17. Ebert, D. 2000. Experimental evidence for rapid parasite adaptation and its consequences for the evolution of virulence. Pp. 163 184 in R. Poulin, S. Morand, and A. Skorping, eds. Evolutionary biology of host-parasite relationships: theory meets reality. Elsevier Science, Amsterdam.
18. Feder, J. L., S. H. Berlocher, and S. B. Opp. 1998. Sympatric host-race formation and speciation in Rhagoletis (dipetera: terphritidae): a tale of two species for Charles D. Pp. 408 441 in S. Mopper, and S. Strauss, eds. Genetic structure in natural insect populations: effects of ecology, life history and behavior. Chapman and Hall, New York.
19. Feder, J. L., J. B. Roethele, K. Filchak, J. Niedbalski, and J. Romero-Severson. 2003. Evidence for inversion polymorphism related to sympatric host race formation in the apple maggot fly, Rhagoletics pomonella. Genetics. 163 : 939 953.
20. Fenner, F., and J. Cairns. 1959. Variation in virulence in relation to adaptation to new hosts. Pp. 225 249 in F. M. Burnet, and W. M. Stanley, eds. The viruses: biochemical, biological and biophysical properties. Academic Press, New York.
21. Filchak, K. E., J. B. Roethele, and J. L. Feder. 2000. Natural selection and sympatric divergence in the apple maggot Rhagoletis pomonella. Nature. 407 : 739 742.
22. Friesen, M. L., G. Saxer, M. Travisano, and M. Doebeli. 2004. Experimental evidence for sympatric ecological diversification due to frequency-dependent competition in Escherichia coli. Evolution. 58 : 245 260.
23. Fu, Y.-X. 2001. Estimating mutation rate and generation time from longitudinal samples of DNA sequences. Mol. Biol. Evol. 18 : 620 626.
24. Garcia-Arenal, F., and B. A. McDonald. 2003. An analysis of the durability of resistance to plant viruses. Phytopathology. 93 : 941 952.
25. Hawthorne, D. J., and S. Via. 2001. Genetic linkage of ecological specialization and reproductive isolation in pea aphids. Nature. 412 : 904 907.
26. Hay, A. J., A. Gregory, A. R. Douglas, and Y. P. Lin. 2001. The evolution of human influenza viruses. Philos. Trans. R. Soc. Lond. B. 356 : 1861 1870.
27. Holmes, E. C. 2004. The phylogeography of human viruses. Mol. Ecol. 13 : 745 756.
28. Kawecki, T. J., and D. Ebert. 2004. Conceptual issues in local adaptation. Ecol. Lett. 7 : 1225 1241.
29. Kuiken, T., E. C. Holmes, J. McCauley, G. F. Rimmelzwaan, C. S. Williams, and B. T. Grenfell. 2006. Host species barriers to influenza virus infections. Science. 312 : 394 397.
30. Leu, J.-Y., and A. W. Murray. 2006. Experimental evolution of mating discrimination in budding yeast. Curr. Biol. 16 : 280 286.
31. Lively, C. M. 1999. Migration, virulence and the geographic mosaic of adaptation by parasites. Am. Nat. 153 : S34 S47.
32. MacLean, R. C. 2005. Adaptive radiation in microbial microcosms. J. Evol. Biol. 18 : 1376 1386.
33. Malmberg, R. L. 1977. The evolution of epistasis and the advantage of recombination in populations of bacteriophage T4. Genetics 86 : 607 621.
34. Marchette, N. J., D. R. Dubois, L. K. Larsen, P. L. Summers, E. G. Kraiselburd, D. J. Gubler, and K. H. Eckels. 1990. Preparation of an attenuated dengue 4 (341750 Carib) virus vaccine. I. Am. J. Trop. Med. Hyg. 43 : 212 218.
35. Mayr, E. 1942. Systematics and the origin of species. Columbia Univ. Press, New York.
36. Mindich, L. 2006. Phages with segmented double-stranded RNA genomes. Pp. 197 207 in R. Calendar, and S. T. Abedon, eds. The bacteriophages. Oxford Univ. Press, New York.
37. Mindich, L., J. F. Sinclair, D. Levine, and J. Cohen. 1976. Genetic studies of temperature-sensitive and nonsense mutants of bacteriophage phi6. Virology 75 : 218 223.
38. Morgan, A. D., S. Gandon, and A. Buckling. 2005. The effect of migration on local adaptation in a coevolving host-parasite system. Nature 437 : 253 256.
39. Muller, H. J. 1939. Reversibility in evolution considered from the standpoint of genetics. Biol. Rev. Camb. Phil. Soc. 14 : 261 280.
40. - - -. 1940. Bearing of the Drosophila work on systematics. Pp. 185 268. in J. S. Huxley, ed. The new systematics. Clarendon Press, Oxford.
41. - - -. 1942. Isolating mechanisms, evolution and temperature. Biol. Symp. 6 : 71 125.
42. Nosil, P., C. P. Sandoval, and B. J. Crespi. 2006. The evolution of host preference in allopatric vs. parapatric populations of Timeme cristinae walking sticks. J. Evol. Biol. 19 : 929 942.
43. Orr, H. A. 2005. The probability of parallel evolution. Evolution. 59 : 216 220.
44. Parrish, C. R., and Y. Kawaoka. 2005. The origins of new pandemic viruses: the acquisition of new host ranges by canine parvovirus and influenza A viruses. Annu. Rev. Microbiol. 59 : 553 586.
45. Poon, L. L. M., C. S. W. Leung, K. H., K. Y. Yuen, Y. Guan, and J. S. M. Peiris. 2005. Recurrent mutations associated with isolation and passage of SARS coronavirus in cells from non-human primates. J. Med. Virol. 76 : 435 440.
46. Rainey, G. J. A., A. Natonson, L. F. Maxfield, and J. M. Coffin. 2003. Mechanisms of avian retrovial host range extension. J. Virol. 77 : 6709 6719.
47. Reddy, D. V. R., and L. M. Black. 1974. Deletion mutations of the genome segments of wound tumor virus. Virology. 61 : 458 473.
48. Rice, W. R. 1987. Speciation via habitat selection: the evolution of reproductive isolation as a correlated character. Evol. Ecol. 1 : 301 314.
49. Rice, W. R., and E. E. Hostert. 1993. Laboratory experiments on speciation: what have we learned in 40 years Evolution. 47 : 1637 1653.
50. Rice, W. R., and G. W. Salt. 1990. The evolution of reproductive isolation as a correlated character under sympatric conditions: experimental evidence. Evolution 44 : 1140 1152.
51. Rozen, D. E., D. Schneider, and R. E. Lenski. 2005. Long-term experimental evolution in Escherichia coli. XIII. phylogenetic history of a balanced polymorphism. J. Mol. Evol. 61 : 171 180.
52. Schemske, D. W. 2000. Understanding the origin of species. Evolution. 54 : 1069 1073.
53. Schluter, D. 2001. Ecology and the origin of species. Trends Ecol. Evol. 16 : 372 380.
54. Shackelton, L. A., C. R. Parrish, U. Truyen, and E. C. Holmes. 2005. High rate of viral evolution associated with the emergence of canine parvovirus. Proc. Natl. Acad. Sci. USA 102 : 379 384.
55. Templeton, A. R. 1980. The theory of speciation via the founder principle. Genetics. 94 : 1011 1038.
56. Turner, P. E., and L. Chao. 1998. Sex and the evolution of intrahost competition in RNA virus φ6. Genetics. 150 : 523 532.
57. Via, S., and D. J. Hawthorne. 2002. The genetic architecture of ecological specialization: correlated gene effects on host use and habitat choice in pea aphids. Am. Nat. 159 : S76 S88.
58. Vines, T. H., and D. Schluter. 2006. Strong assortative mating between allopatric sticklebacks as a by-product of adaptation to different environments. Proc. R. Soc. Lond. B. 273 : 911 916.
59. Wichman, H. A., M. R. Badgett, L. A. Scott, C. M. Boilianne, and J. J. Bull. 1999. Different trajectories of parallel evolution during viral adaptation. Science. 285 : 422 424.
60. Wilson, R. A. 2004. Test cases, resolvability and group selection: a critical examination of the myxoma case. Phil. Sci. 71 : 380 401.
61. Zárate, S, and I. S. Novella. 2004. Vesicular stomatitis virus evolution during alternation between persistent infection in insect cells and acute infection in mammalian cells is dominated by the persistence phase. J. Virol. 78 : 12236 12242.
62. Zarling, D. A., A. G. Mosser, and H. M. Temin. 1977. Spontaneous mutations affecting the host range of the B77 strain of avian sarcoma virus involve type-specific changes in the virion envelope antigen. J. Virol. 21 : 105 112.