Design of a fluorescent DNA IMPLICATION logic gate and detection of Ag+ and cysteine with triphenylmethane dye/G-quadruplex complexes

Biosensors and Bioelectronics

Volumn 26, Issue 2, 2010, Pages 327-332

  Guo, Jun Hong ^a   Kong, De Ming ^a   Shen, Han Xi ^a  

^a NANKAI UNIVERSITY   (China)

Author keywords

Ag+; Cysteine; DNA logic gate; G quadruplex; Triphenylmethane (TPM) dye

Indexed keywords

AG+; CYSTEINE; DYE FLUORESCENCES; ENHANCED FLUORESCENCE; FLUORESCENCE INTENSITIES; FLUORESCENCE SIGNALS; FLUORESCENCE SYSTEM; G-QUADRUPLEX STRUCTURE; G-QUADRUPLEXES; GATE OPERATION; LABEL FREE; NONDESTRUCTIVE READOUT; OUTPUT SIGNAL; TRIPHENYLMETHANE (TPM) DYE;

DNA; GENES; LOGIC GATES; SILVER; THERMOELECTRIC POWER;

FLUORESCENCE;

CYSTEINE; DNA; GUANINE QUADRUPLEX; MALACHITE GREEN; METHYL GREEN; SILVER; TRIPHENYLMETHANE DERIVATIVE;

ARTICLE; CONTROLLED STUDY; DNA DETERMINATION; DNA STRUCTURE; FLUORESCENCE ANALYSIS; RELIABILITY; SIGNAL PROCESSING;

COMPUTERS, MOLECULAR; CYSTEINE; EQUIPMENT DESIGN; EQUIPMENT FAILURE ANALYSIS; FLUORESCENT DYES; G-QUADRUPLEXES; SIGNAL PROCESSING, COMPUTER-ASSISTED; SILVER; SPECTROMETRY, FLUORESCENCE; TRITYL COMPOUNDS;

EID: 77956926841     PISSN: 09565663     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bios.2010.08.020     Document Type: Article

References (40)

1. Bhasikuttan A.C., Mohanty J., Pal H. Angew. Chem. Int. Ed. 2007, 46:4120-4122.
2. Elbaz J., Wang Z.-G., Orbach R., Willner I. Nano Lett. 2009, 9:4510-4514.
3. Feng X.L., Duan X.R., Liu L.B., Feng F.D., Wang S., Li Y.L., Zhu D.B. Angew. Chem. Int. Ed. 2009, 48:5316-5321.
4. Freeman R., Finder T., Willner I. Angew. Chem. 2009, 121:7958-7961.
5. Frezza B.M., Cockroft S.L., Ghadiri M.R. J. Am. Chem. Soc. 2007, 129:14875-14879.
6. Guo J.H., Zhu L.N., Kong D.M., Shen H.X. Talanta 2009, 80:607-613.
7. Gruen L.C. Biochim. Biophys. Acta 1975, 386:270-274.
8. Kong D.M., Guo J.H., Yang W., Ma Y.E., Shen H.X. Biosens. Bioelectron. 2009, 25:88-93.
9. Kong D.M., Ma Y.E., Guo J.H., Yang W., Shen H.X. Anal. Chem. 2009, 81:2678-2684.
10. Kong D.M., Ma Y.E., Wu J., Shen H.X. Chem. Eur. J. 2009, 15:901-909.
11. Kong D.M., Xu J., Shen H.X. Anal. Chem. 2010, 82:6148-6153.
12. Konry T., Walt D.R. J. Am. Chem. Soc. 2009, 131:13232-13233.
13. Li T., Dong S.J., Wang E.K. Anal. Chem. 2009, 81:2144-2149.
14. Li T., Li B.L., Wang E.K., Dong S.J. Chem. Commun. 2009, 3551-3553.
15. Li T., Shi L.L., Wang E.K., Dong S.J. Chem. Eur. J. 2009, 15:3347-3350.
16. Li T., Wang E.K., Dong S.J. J. Am. Chem. Soc. 2009, 131:15082-15083.
17. Margulies D., Hamilton A.D. J. Am. Chem. Soc. 2009, 131:9142-9143.
18. McDonnel G., Russell A.D. Clin. Microbiol. Rev. 1999, 12:147-179.
19. Mergny J.L., Riou J.F., Mailliet P., Teulade-Fichou M.P., Gilson E. Nucleic Acids Res. 2002, 30:839-865.
20. Miyoshi D., Inoue M., Sugimoto N. Angew. Chem. 2006, 118:7880-7883.
21. Moshe M., Elbaz J., Willner I. Nano Lett. 2009, 9:1196-1200.
22. Neidle S., Parkinson G. Nat. Rev. Drug Des. 2002, 1:383-393.
23. Ogasawara S., Kyoi Y., Fujimoto K. ChemBioChem 2007, 8:1520-1525.
24. Palumbo S.L., Memmott R.M., Uribe D.J., Krotova-Khan Y., Hurley L.H., Ebbinghaus S.W. Nucleic Acids Res. 2008, 36:1755-1769.
25. Park H.-J., Kim J.Y., Kim J., Lee J.-H., Hahn J.-S., Gu M.B., Yoon J. Water Res. 2009, 43:1027-1032.
26. Phan A.T., Kuryavyi V.D., Patel J. Curr. Opin. Struct. Biol. 2006, 16:288-298.
27. Prasanna de Silva A., McClenaghan N.D. Chem. Eur. J. 2002, 8:4935-4945.
28. Rurack K., Trieflinger C., Koval'chuck A., Daub J. Chem. Eur. J. 2007, 13:8998-9003.
29. Seenisamy J., Rezler E.M., Powell T.J., Tye D., Gokhale V., Joshi C.S., Siddiqui Jain A., Hurley L.H. J. Am. Chem. Soc. 2004, 126:8702-8709.
30. Shlyahovsky B., Li Y., Lioubashevski O., Elbaz J., Willner I. ACS Nano 2009, 3:1831-1843.
31. Siddiqui-Jain A., Grand C.L., Bearss D.J., Hurley L.H. Proc. Natl. Acad. Sci. U.S.A. 2002, 99:11593-11598.
32. Stojanovic M.N., Mitchell T.E., Stefanovic D. J. Am. Chem. Soc. 2002, 124:3555-3561.
33. Stojanovic M.N., Semova S., Kolpashchikov D., Macdonald J., Morgan C., Stefanovic D. J. Am. Chem. Soc. 2005, 127:6914-6915.
34. Urso A.D., Mammana A., Balaz M., Holmes A.E., Berova N., Lauceri R., Purrello R. J. Am. Chem. Soc. 2009, 131:2046-2047.
35. Voelcker N.H., Guckian K.M., Saghatelian A., Ghadiri M.R. Small 2008, 4:427-431.
36. Willner I., Shlyahovsky B., Zayats M., Willner B. Chem. Soc. Rev. 2008, 37:1153-1165.
37. Yoshidaab W., Yokobayashi Y. Chem. Commun. 2007, 195-197.
38. Zahler A.M., Williamson J.R., Cech T.R., Prescott D.M. Nature 1991, 350:718-720.
39. Zhang C., Yang J., Xu J. Langmuir 2010, 26:1416-1419.
40. Zhou X.H., Kong D.M., Shen H.X. Anal. Chem. 2010, 82:789-793.