Fluorescence logic-signal-based multiplex detection of nucleases with the assembly of a cationic conjugated polymer and branched DNA

Angewandte Chemie - International Edition

Volumn 48, Issue 29, 2009, Pages 5316-5321

  Feng, Xuli ^a   Duan, Xinrui ^a   Liu, Libing ^a   Feng, Fude ^a   Wang, Shu ^a   Li, Yuliang ^a   Zhu, Daoben ^a  

^a INSTITUTE OF CHEMISTRY   (China)

Author keywords

Biosensors; Conjugated polymers; DNA cleavage; FRET; Nucleases

Indexed keywords

BRANCHED DNA; CATIONIC CONJUGATED POLYMER; DNA CLEAVAGE; EMISSION WAVELENGTH; FLUORESCENCE INTENSITIES; FLUORESCENCE RESONANCE ENERGY TRANSFER; FRET; MULTI-STEP; NUCLEASES;

BIOSENSORS; DNA; DYES; ENERGY TRANSFER; FLUORESCENCE; GENES; MULTIPLEXING; NUCLEIC ACIDS; POLYMERS;

CONJUGATED POLYMERS;

CATION; DNA; FLUORESCENT DYE; POLYMER; RESTRICTION ENDONUCLEASE;

CHEMISTRY; CONFORMATION; FLUORESCENCE RESONANCE ENERGY TRANSFER; GENETIC PROCEDURES; PROCEDURES;

BIOSENSING TECHNIQUES; CATIONS; DNA; DNA RESTRICTION ENZYMES; FLUORESCENCE RESONANCE ENERGY TRANSFER; FLUORESCENT DYES; NUCLEIC ACID CONFORMATION; POLYMERS;

EID: 70349784862     PISSN: 14337851     EISSN: None     Source Type: Journal    
DOI: 10.1002/anie.200901555     Document Type: Article

References (58)

1. a) S. M. Linn, R. S. Lloyd, R. J. Roberts, Nucleases, 2nd ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, 1993;
2. b) R. J. Roberts, Nucleic Acids Res. 1990, 18, 2331.
3. a) J. Sambrook, E. F. Fritsch, T. Maniatis, Molecular Cloning: A Laboratory Manual, 2nd ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, 1989;
4. b) M. Ma, L. Benimetskaya, I. Ebedeva, J. Dignam, G. Takle, C. A. Stein, Nat. Biotechnol. 2000, 18, 58.
5. a) S. Halford, A. Goodall, Biochemistry 1988, 27, 1771;
6. b) A. Fliess, H. Wolfes, A. Rosenthal, K. Schwellnus, H. Blöcker, R. Frank, A. Pingoud, Nucleic Acids Res. 1986, 14, 3463;
7. c) S. P. Lee, M. K. Han, Methods Enzymol. 1997, 278, 343.
8. a) J. B. Biggins, J. R. Prudents, D. J. Marshall, M. Ruppen, J. S. Thorson, Proc. Natl. Acad. Sci. USA 2000, 97, 13537;
9. b) J. J. Li, R. Geyer, W. Tan, Nucleic Acids Res. 2000, 28, 52e;
10. c) S. S. Ghosh, P. S. Eis, K. Blumeyer, K. Fearon, D. P. Millar, Nucleic Acids Res. 1994, 22, 3155;
11. d) U. Kettling, A. Koltermann, P. Schwille, M. Eigen, Proc. Natl. Acad. Sci. USA 1998, 95, 1416.
12. G. Liu, Y. Yin, S. Kunchakarra, B. Mukherjee, D. Gerion, S. D. Jett, D. G. Bear, J. W. Gray, A. P. Alivisatos, L. P. Lee, F. F. Chen, Nat. Nanotechnol. 2006, 1, 47.
13. a) S. W. Thomas III, G. D. Joly, T. M. Swager, Chem. Rev. 2007, 107, 1339;
14. b) J. H. Wosnick, C. M. Mello, T. M. Swager, J. Am. Chem. Soc. 2005, 127, 3400;
15. c) J. Li, T. M. Swager, Chem. Commun. 2004, 2798.
16. a) B. Liu, G. C. Bazan, Chem. Mater. 2004, 16, 4467;
17. b) B. S. Gaylord, A. J. Heeger, G. C. Bazan, Proc. Natl. Acad. Sci. USA 2002, 99, 10954.
18. a) L. H. Chen, D. W. McBranch, H. L. Wang, R. Helgeouson, F. Wudl, D. G Whitten, Proc. Natl. Acad. Sci. USA 1999, 96, 12287;
19. b) S. Kumaraswamy, T. S. Bergstedt, X. Shi, F. Rininsland, S. A. Kushon, W. Xia, K. D. Ley, K. E. Achyuthan, D. McBranch, D. G Whitten, Proc. Natl. Acad. Sci. USA 2004, 101, 7511.
20. a) U. H. F. Bunz, Chem. Rev. 2000, 100, 1605;
21. b) I. B. Kim, B. Erdogan, J. N Wilson, U. H. F. Bunz, Chem. Eur. J. 2004, 10, 6247.
22. a) C. Y J. Yang, M. R. Pinto, K. S. Schanze, W. H. Tan, Angew. Chem. 2005, 117, 2628;
23. Angew. Chem. Int. Ed. 2005, 44, 2572;
24. b) M. R. Pinto, K. S. Schanze, Proc. Natl. Acad. Sci. USA 2004, 101, 7505.
25. a) H. Xu, H. Wu, F. Huang, S. Song, W. Li, Y. Cao, C. Fan, Nucleic Acids Res. 2005, 33, e83;
26. b) C. Fan, K. W Plaxco, A. J. Heeger, J. Am. Chem. Soc. 2002, 124, 5642.
27. a) K. Lee, J.-M. Rouillard, T. Pham, E. Gulari, J. Kim, Angew. Chem. 2007, 119, 4751;
28. Angew. Chem. Int. Ed. 2007, 46, 4667;
29. b) K. Lee, L. K. Povlich, J. Kim, Adv. Funct. Mater. 2007, 17, 2580.
30. a) H. A. Ho, A. Najari, M. Leclerc, Acc. Chem. Res. 2008, 41, 168;
31. b) H. A. Ho, M. Boissinot, M. G Bergeron, G. Corbeil, K. Doré, D. Boudreau, M. Leclerc, Angew. Chem. 2002, 114, 1618;
32. Angew. Chem. Int. Ed. 2002, 41, 1548;
33. c) M. B. Abérem, A. Najari, H. A. Ho, J.-F. Gravel, P. Nobert, D. Boudreau, M. Leclerc, Adv. Mater. 2006, 18, 2703.
34. a) K. P. R. Nilsson, O. Inganäs, Nat. Mater. 2003, 2, 419;
35. b) K. P. R. Nilsson, J. Rydberg, L. Baltzer, O. Inganäs, Proc. Natl. Acad. Sci. USA 2003, 100, 10170;
36. c) C. J. Sigurdson, K. P. R. Nilsson, S. Hornemann, G. Manco, M. Polymenidou, P. Schwarz, M. Leclerc, P. Hammarström, K. Wüthrich, A. Aguzzi, Nat. Methods 2007, 4, 1023.
37. C. Li, M. Numata, M. Takeuchi, S. Shinkai, Angew. Chem. 2005, 117, 6529;
38. Angew. Chem. Int. Ed. 2005, 44, 6371.
39. a) E Feng, F. He, L. An, S. Wang, Y. Li, D. Zhu, Adv. Mater. 2008, 20, 2959;
40. b) F. Feng, Y. Tang, S. Wang, Y. Li, D. Zhu, Angew. Chem. 2007, 119, 8028;
41. Angew. Chem. Int. Ed. 2007, 46, 7882.
42. Y. Tang, F. Feng, F. He, S. Wang, Y. Li, D. Zhu, J. Am. Chem. Soc. 2006, 128, 14972.
43. F. Feng, Y. Tang, F. He, M. Yu, X. Duan, S. Wang, Y. Li, D. Zhu, Adv. Mater. 2007, 19, 3490.
44. a) Y Li, Y. T. Hong, D. Luo, Nat. Biotechnol. 2005, 23, 885;
45. b) Y. Li, Y. D. Tseng, S. Y Kwon, L. D'Espaux, J. S. Bunch, P. L. McEuen, D. Luo, Nat. Mater. 2004, 3, 38.
46. Y. Tang, F. He, S. Wang, Y. Li, D. Zhu, G. C. Bazan, Adv. Mater. 2006, 18, 2105.
47. X. Duan, S. Wang, Z. Li, Chem. Commun. 2008, 1302.
48. J. R. Lakowicz, Principles of Fluorescence Spectroscopy, Kluwer Academic/Plenum, New York, 1999.
49. B. Liu, G. C. Bazan, J. Am. Chem. Soc. 2006, 128, 1188.
50. a) Molecular Switches (Ed.; B. L. Feringa), Wiley-VCH, Weinheim, 2001;
51. b) Molecular Devices and Machines: A Journey into the Nanoworld (Eds.; V. Balzani, M. Venturi, A. Credi), Wiley-VCH, Weinheim, 2003.
52. The concentrations of PFP and DNAs were very low for the experiment. Upon adding PFP to the assay solutions, emission spectra were recorded immediately, no precipitate was observed, and the FRET remained operative under these circumstances.
53. a) EM. Raymo, Adv. Mater. 2002, 14, 401;
54. b) V. Balzani, Photochem. Photobiol. Sci. 2003, 2, 459;
55. c) P. Ball, Nature 2000, 406, 118;
56. d) A. P. de Silva, D. P. Fox, A. J. M. Huxley, T. S. Moody, Coord. Chem. Rev. 2000, 205, 41;
57. e) T. Niazov, R. Baron, E. Katz, O. Lioubashevski, I. Willner, Proc. Natl. Acad. Sci. USA 2006, 103, 17160.
58. A. P. de Silva, H. Q. N. Gunaratne, C. P. McCoy, Nature 1993, 364, 42.