-
1
-
-
22244489084
-
The microbes online web site for comparative genomics
-
Alm E.J., Huang K.H., Price M.N., Koche R.P., Keller K., Dubchak I.L., Arkin A.P. The microbes online web site for comparative genomics. Genome Res. 2005, 15:1015-1022.
-
(2005)
Genome Res.
, vol.15
, pp. 1015-1022
-
-
Alm, E.J.1
Huang, K.H.2
Price, M.N.3
Koche, R.P.4
Keller, K.5
Dubchak, I.L.6
Arkin, A.P.7
-
2
-
-
0034043778
-
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
-
Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol. Biol. Evol. 2000, 17:540-552.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 540-552
-
-
Castresana, J.1
-
3
-
-
0001872693
-
Chemical analysis
-
ASM Press, Washington, DC, A.P. Gerhardt, R.G.E. Murray, W.A. Wood, N.R. Krieg (Eds.)
-
Daniels L., Handson R.S., Phillips J.A. Chemical analysis. Methods for General and Molecular Bacteriology 1994, 512-554. ASM Press, Washington, DC. A.P. Gerhardt, R.G.E. Murray, W.A. Wood, N.R. Krieg (Eds.).
-
(1994)
Methods for General and Molecular Bacteriology
, pp. 512-554
-
-
Daniels, L.1
Handson, R.S.2
Phillips, J.A.3
-
4
-
-
0032960267
-
Identification of Rhizobium leguminosarum and Rhizobium sp. (Cicer) strains using a custum fatty acid methyl ester (FAME) profile library
-
Dunfield K.E., Xavier L.J.C., Germida J.J. Identification of Rhizobium leguminosarum and Rhizobium sp. (Cicer) strains using a custum fatty acid methyl ester (FAME) profile library. J. Appl. Microbiol. 1999, 86:78-86.
-
(1999)
J. Appl. Microbiol.
, vol.86
, pp. 78-86
-
-
Dunfield, K.E.1
Xavier, L.J.C.2
Germida, J.J.3
-
5
-
-
33748887108
-
Bioremediation of a beach affected by the heavy oil spill of the Prestige
-
Fernández-Álvarez P., Vila J., Garrido-Fernández J.M., Grifoll M., Lema J.M. Bioremediation of a beach affected by the heavy oil spill of the Prestige. J. Hazard. Mater. 2006, 137:1523-1531.
-
(2006)
J. Hazard. Mater.
, vol.137
, pp. 1523-1531
-
-
Fernández-Álvarez, P.1
Vila, J.2
Garrido-Fernández, J.M.3
Grifoll, M.4
Lema, J.M.5
-
6
-
-
34547174259
-
Evaluation of biodiesel as bioremediation agent for the treatment of the shore affected by the heavy oil spill of the Prestige
-
Fernández-Álvarez P., Vila J., Garrido J.M., Feijoo G., Grifoll M., Lema J.M. Evaluation of biodiesel as bioremediation agent for the treatment of the shore affected by the heavy oil spill of the Prestige. J. Hazard. Mater. 2007, 147:914-922.
-
(2007)
J. Hazard. Mater.
, vol.147
, pp. 914-922
-
-
Fernández-Álvarez, P.1
Vila, J.2
Garrido, J.M.3
Feijoo, G.4
Grifoll, M.5
Lema, J.M.6
-
7
-
-
0002051540
-
BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
-
Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 1999, 41:95-98.
-
(1999)
Nucleic Acids Symp. Ser.
, vol.41
, pp. 95-98
-
-
Hall, T.A.1
-
8
-
-
40449094546
-
Cohaesibacter gelatinilyticus gen. nov. sp. nov., a marine bacterium that forms a distinct branch in the order Rhizobiales, and proposal of Cohaesibacteraceae fam. nov
-
Hwang C.Y., Cho B.C. Cohaesibacter gelatinilyticus gen. nov. sp. nov., a marine bacterium that forms a distinct branch in the order Rhizobiales, and proposal of Cohaesibacteraceae fam. nov. Int. J. Syst. Evol. Microbiol. 2008, 58:267-277.
-
(2008)
Int. J. Syst. Evol. Microbiol.
, vol.58
, pp. 267-277
-
-
Hwang, C.Y.1
Cho, B.C.2
-
9
-
-
0030464477
-
Identification of Agrobacterium and Rhizobium species based on cellular fatty acid composition
-
Jarvis B.D.W., Sivakumaran S., Tighe S.W., Gillis M. Identification of Agrobacterium and Rhizobium species based on cellular fatty acid composition. Plant Soil 1996, 184:143-158.
-
(1996)
Plant Soil
, vol.184
, pp. 143-158
-
-
Jarvis, B.D.W.1
Sivakumaran, S.2
Tighe, S.W.3
Gillis, M.4
-
10
-
-
84886453373
-
MALDI-TOF MS for microbial identification: years of experimental development to an established protocol
-
John Wiley & Sons, London, H.N. Shah, S.E. Gharbia, V. Encheva (Eds.)
-
Kallow W., Erhard M., Shah H.N., Raptakis E., Welker M. MALDI-TOF MS for microbial identification: years of experimental development to an established protocol. Mass Spectrometry for Microbial Proteomics 2010, John Wiley & Sons, London. H.N. Shah, S.E. Gharbia, V. Encheva (Eds.).
-
(2010)
Mass Spectrometry for Microbial Proteomics
-
-
Kallow, W.1
Erhard, M.2
Shah, H.N.3
Raptakis, E.4
Welker, M.5
-
11
-
-
0029799185
-
Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa
-
Kämpfer P., Kroppenstedt R.M. Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can. J. Microbiol. 1996, 42:989-1005.
-
(1996)
Can. J. Microbiol.
, vol.42
, pp. 989-1005
-
-
Kämpfer, P.1
Kroppenstedt, R.M.2
-
12
-
-
0023752959
-
Fatty acids, antibiotic resistance, and deoxyribonucleic acid homology groups of Bradyrhizobium japonicum
-
Kuykendal L.D., Roy M.A., O'Neil J.J., Devine T.E. Fatty acids, antibiotic resistance, and deoxyribonucleic acid homology groups of Bradyrhizobium japonicum. Int. J. Syst. Bacteriol. 1988, 38:358-361.
-
(1988)
Int. J. Syst. Bacteriol.
, vol.38
, pp. 358-361
-
-
Kuykendal, L.D.1
Roy, M.A.2
O'Neil, J.J.3
Devine, T.E.4
-
13
-
-
36349011895
-
Order VI. Rhizobiales ord. nov
-
Springer, NY, D.J. Brenner, N.R. Krieg, J.T. Staley, G.M. Garrity (Eds.)
-
Kuykendal L.D. Order VI. Rhizobiales ord. nov. Bergey's Manual of Systematic Bacteriology, 2nd ed. vol. 2, part C 2005, 324-574. Springer, NY. D.J. Brenner, N.R. Krieg, J.T. Staley, G.M. Garrity (Eds.).
-
(2005)
Bergey's Manual of Systematic Bacteriology, 2nd ed. vol. 2, part C
, pp. 324-574
-
-
Kuykendal, L.D.1
-
14
-
-
2542523843
-
ARB: a software environment for sequence data
-
Ludwig W., Strunk O., Westram R., Richter L., Meier H., Yadhukumar, Buchner A., Lai T., Steppi S., Jobb G., Förster W., Brettske I., Gerber S., Ginhart A.W., Gross O., Grumann S., Hermann S., Jost R., König A., Liss T., Lüßmann R., May M., Nonhoff B., Reichel B., Strehlow R., Stamatakis A., Stuckmann N., Vilbig A., Lenke M., Ludwig T., Bode A., Schleifer K.-H. ARB: a software environment for sequence data. Nucleic Acids Res. 2004, 32:1363-1371.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1363-1371
-
-
Ludwig, W.1
Strunk, O.2
Westram, R.3
Richter, L.4
Meier, H.5
Yadhukumar6
Buchner, A.7
Lai, T.8
Steppi, S.9
Jobb, G.10
Förster, W.11
Brettske, I.12
Gerber, S.13
Ginhart, A.W.14
Gross, O.15
Grumann, S.16
Hermann, S.17
Jost, R.18
König, A.19
Liss, T.20
Lüßmann, R.21
May, M.22
Nonhoff, B.23
Reichel, B.24
Strehlow, R.25
Stamatakis, A.26
Stuckmann, N.27
Vilbig, A.28
Lenke, M.29
Ludwig, T.30
Bode, A.31
Schleifer, K.-H.32
more..
-
15
-
-
0019982011
-
Single derivatization method for routine analysis of bacterial whole-cell fatty acid methyl esters, including hydroxy acids
-
Miller L.T. Single derivatization method for routine analysis of bacterial whole-cell fatty acid methyl esters, including hydroxy acids. J. Clin. Microbiol. 1982, 16:584-586.
-
(1982)
J. Clin. Microbiol.
, vol.16
, pp. 584-586
-
-
Miller, L.T.1
-
16
-
-
0000198211
-
Precise measurement of the G+C content of deoxyribonucleic acid by high performance liquid chromatography
-
Mesbah M., Premachandran U., Whitman W. Precise measurement of the G+C content of deoxyribonucleic acid by high performance liquid chromatography. Int. J. Syst. Bacteriol. 1989, 39:159-167.
-
(1989)
Int. J. Syst. Bacteriol.
, vol.39
, pp. 159-167
-
-
Mesbah, M.1
Premachandran, U.2
Whitman, W.3
-
17
-
-
0025340708
-
Brucella abortus 16S rRNA and lipid A reveal a phylogenetic relationship with members of the alfa-2 subdivision of class Proteobacteria
-
Moreno E., Stackebrandt E., Dorsch M., Wolters J., Busch M., Mayer H. Brucella abortus 16S rRNA and lipid A reveal a phylogenetic relationship with members of the alfa-2 subdivision of class Proteobacteria. J. Bacteriol. 1990, 172:3569-3576.
-
(1990)
J. Bacteriol.
, vol.172
, pp. 3569-3576
-
-
Moreno, E.1
Stackebrandt, E.2
Dorsch, M.3
Wolters, J.4
Busch, M.5
Mayer, H.6
-
18
-
-
18644367450
-
Intraspecific comparative analysis of the species Salinibacter ruber
-
Peña A., Valends M., Santos F., Buczolits S., Antón J., Kämpfer P., Busse H.J., Amann R., Rosselló-Mora R. Intraspecific comparative analysis of the species Salinibacter ruber. Extremophiles 2005, 9:151-161.
-
(2005)
Extremophiles
, vol.9
, pp. 151-161
-
-
Peña, A.1
Valends, M.2
Santos, F.3
Buczolits, S.4
Antón, J.5
Kämpfer, P.6
Busse, H.J.7
Amann, R.8
Rosselló-Mora, R.9
-
19
-
-
66349124987
-
-
ASM Press
-
Reddy C.A., Beveridge T.J., Breznak J.A., Marzluf G., Schmidt T.M., Snyder L.R. Methods for General and Molecular Microbiology 2007, ASM Press. 3rd ed.
-
(2007)
Methods for General and Molecular Microbiology
-
-
Reddy, C.A.1
Beveridge, T.J.2
Breznak, J.A.3
Marzluf, G.4
Schmidt, T.M.5
Snyder, L.R.6
-
20
-
-
73149098333
-
Shifting the genomic gold standard for the prokaryotic species definition
-
Richter M., Rosselló-Móra R. Shifting the genomic gold standard for the prokaryotic species definition. Proc. Natl. Acad. Sci. U.S.A. 2009, 106:19126-19131.
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 19126-19131
-
-
Richter, M.1
Rosselló-Móra, R.2
-
21
-
-
0000612080
-
Phenotypic characterization
-
American Society for Microbiology, Washington, DC, P. Gerhardt, R.G.E. Murray, W.A. Wood, N.R. Krieg (Eds.)
-
Smibert R.M., Krieg N.R. Phenotypic characterization. Methods for General and Molecular Bacteriology 1994, 607-654. American Society for Microbiology, Washington, DC. P. Gerhardt, R.G.E. Murray, W.A. Wood, N.R. Krieg (Eds.).
-
(1994)
Methods for General and Molecular Bacteriology
, pp. 607-654
-
-
Smibert, R.M.1
Krieg, N.R.2
-
22
-
-
33750403801
-
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of data and mixed models
-
Stamatakis A. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of data and mixed models. Bioinformatics 2006, 22:2688-2690.
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
23
-
-
0021715576
-
Determination of DNA base composition by reverse-phase high-performance liquid chromatography
-
Tamaoka J., Komagata K. Determination of DNA base composition by reverse-phase high-performance liquid chromatography. FEMS Microbiol. Lett. 1984, 25:125-128.
-
(1984)
FEMS Microbiol. Lett.
, vol.25
, pp. 125-128
-
-
Tamaoka, J.1
Komagata, K.2
-
24
-
-
0031574072
-
The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., Higgins D.G. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 1997, 24:4876-4882.
-
(1997)
Nucleic Acids Res.
, vol.24
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
25
-
-
0034023713
-
Analysis of cellular fatty acids and phenotypic relationships of Agrobacterium, Bradyrhizobium, Mesorhizobium, Rhizobium, and Sinorhyzobium species using the Sherlock Microbial Identification System
-
Tighe S.W., de Lajudie P., Dipietro K., Lindström K., Nick G., Jarvis D.D.W. Analysis of cellular fatty acids and phenotypic relationships of Agrobacterium, Bradyrhizobium, Mesorhizobium, Rhizobium, and Sinorhyzobium species using the Sherlock Microbial Identification System. Int. J. Syst. Evol. Microbiol. 2000, 50:787-801.
-
(2000)
Int. J. Syst. Evol. Microbiol.
, vol.50
, pp. 787-801
-
-
Tighe, S.W.1
de Lajudie, P.2
Dipietro, K.3
Lindström, K.4
Nick, G.5
Jarvis, D.D.W.6
-
26
-
-
0025098748
-
Lipid composition of Halobacterium lacusprofundi
-
Tindall B.J. Lipid composition of Halobacterium lacusprofundi. FEMS Microbiol. Lett. 1990, 66:199-202.
-
(1990)
FEMS Microbiol. Lett.
, vol.66
, pp. 199-202
-
-
Tindall, B.J.1
-
27
-
-
0344968671
-
Respiratory lipoquinones as biomarkers
-
Kluwer, Dordrecht, The Netherlands, A. Akkermans, F. de Bruijn, D. van Elsas (Eds.)
-
Tindall B.J. Respiratory lipoquinones as biomarkers. Molecular Microbial Ecology Manual, Sect 4. 1. 5, Suppl. 1 1996, Kluwer, Dordrecht, The Netherlands. 2nd ed. A. Akkermans, F. de Bruijn, D. van Elsas (Eds.).
-
(1996)
Molecular Microbial Ecology Manual, Sect 4. 1. 5, Suppl. 1
-
-
Tindall, B.J.1
-
28
-
-
53149143854
-
Reclassification of Rhodobium marinum and Rhodobium pfennigii as Afifella marina gen. nov. comb. nov. and Afifella pfennigii comb. nov., a new genus of photoheterotrophic Alphaproteobacteria and emended descriptions of Rhodobium, Rhodobium orientis and Rhodobium gokarnense
-
Urdiain M., López-López A., Gonzalo C., Busse H.-J., Langer S., Kämpfer P., Rosselló-Móra R. Reclassification of Rhodobium marinum and Rhodobium pfennigii as Afifella marina gen. nov. comb. nov. and Afifella pfennigii comb. nov., a new genus of photoheterotrophic Alphaproteobacteria and emended descriptions of Rhodobium, Rhodobium orientis and Rhodobium gokarnense. Syst. Appl. Microbiol. 2008, 31:339-351.
-
(2008)
Syst. Appl. Microbiol.
, vol.31
, pp. 339-351
-
-
Urdiain, M.1
López-López, A.2
Gonzalo, C.3
Busse, H.-J.4
Langer, S.5
Kämpfer, P.6
Rosselló-Móra, R.7
-
29
-
-
0035653255
-
Identification of a novel metabolite in the degradation of pyrene by Mycobacterium sp. strain AP1. Actions of the isolate on two- and three-ring polycyclic aromatic hydrocarbons
-
Vila J., López Z., Sabaté J., Minguillón C., Solanas A.M., Grifoll M. Identification of a novel metabolite in the degradation of pyrene by Mycobacterium sp. strain AP1. Actions of the isolate on two- and three-ring polycyclic aromatic hydrocarbons. Appl. Environ. Microbiol. 2001, 67:5497-5505.
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 5497-5505
-
-
Vila, J.1
López, Z.2
Sabaté, J.3
Minguillón, C.4
Solanas, A.M.5
Grifoll, M.6
-
30
-
-
77954405374
-
Microbial community structure of a heavy fuel oil-degrading marine consortium. Linking microbial dynamics with PAH utilization
-
Vila J., Nieto J.M., Mertens J., Springael D., Grifoll M. Microbial community structure of a heavy fuel oil-degrading marine consortium. Linking microbial dynamics with PAH utilization. FEMS Microbiol. Ecol. 2010, 73:349-362.
-
(2010)
FEMS Microbiol. Ecol.
, vol.73
, pp. 349-362
-
-
Vila, J.1
Nieto, J.M.2
Mertens, J.3
Springael, D.4
Grifoll, M.5
-
31
-
-
0026067797
-
16S ribosomal DNA amplification for phylogenetic study
-
Weisburg W.G., Barns S.M., Pelletier D.A., Lane D.J. 16S ribosomal DNA amplification for phylogenetic study. J. Bacteriol. 1991, 173:697-703.
-
(1991)
J. Bacteriol.
, vol.173
, pp. 697-703
-
-
Weisburg, W.G.1
Barns, S.M.2
Pelletier, D.A.3
Lane, D.J.4
-
32
-
-
0000420475
-
Gram-negative bacteria
-
Academic Press, NY
-
Wilkinson S.G. Gram-negative bacteria. Microbial Lipids 1988, vol. 1:299-487. Academic Press, NY.
-
(1988)
Microbial Lipids
, vol.1
, pp. 299-487
-
-
Wilkinson, S.G.1
-
33
-
-
52149085893
-
The all-species living tree project: a 16S rRNA-based phylogenetic tree of all sequenced type strains
-
Yarza P., Richter M., Peplies J., Euzéby J., Amann R., Schleifer K.-H., Ludwig W., Glöckner F.O., Rosselló-Móra R. The all-species living tree project: a 16S rRNA-based phylogenetic tree of all sequenced type strains. Syst. Appl. Microbiol. 2008, 31:241-250.
-
(2008)
Syst. Appl. Microbiol.
, vol.31
, pp. 241-250
-
-
Yarza, P.1
Richter, M.2
Peplies, J.3
Euzéby, J.4
Amann, R.5
Schleifer, K.-H.6
Ludwig, W.7
Glöckner, F.O.8
Rosselló-Móra, R.9
|