Empirical Versus N On Empirical Evaluation Of Secondary Structure Of Fibrous And Membrane Proteins By Solid-State Nmr: A Practical Approach

Annual Reports on NMR Spectroscopy

Volumn 36, Issue C, 1998, Pages 79-121

  Saitô, Hazime ^a   Tuzi, Satoru ^a   Naito, Akira ^a  

^a UNIVERSITY OF HYOGO   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 77956739241     PISSN: 00664103     EISSN: None     Source Type: Book Series    
DOI: 10.1016/S0066-4103(08)60006-X     Document Type: Article

References (105)

1. Opella S.J., Stuart P.L., and Valentine K.G. Q. Rev. Biophys. 91 (1987) 7
2. Smith S.O., and Griffin R.G. Annu. Rev. Phys. Chem. 39 (1988) 511
3. Chirlian L.E., and Opella S.J. Adv. Magn. Reson. 14 (1990) 183
4. Opella S.J. Annu. Rev. Phys. Chem. 45 (1994) 659
5. Smith S.O., and Peersen O.B. Annu. Rev. Biophys. Biomol. Struct 21 (1992) 25
6. Cross T.A. Annu. Rep. NMR Spectrosc 21 (1994) 123
7. Saitô H., Tabeta R., Shoji A., Ozaki T., Ando I., and Asakura T. In: Govil G., Kheterapal C.L., and Saran A. (Eds). Magnetic Resonance in Biology and Medicine (1985), Tata McGraw-Hill, New Delhi 195
8. Saitô H. Magn. Reson. Chem. 24 (1986) 835
9. Saitô H., and Ando I. Annu. Rep. NMR Spectrosc 21 (1989) 209
10. Naito A., Kamihira M., Tuzi S., and Saitô H. J. Phys. Chem. 99 (1995) 12041
11. M. Kamihira, A. Naito, K. Nishimura. S. Tuzi and H. Saitô, J Phys. Chem., submitted.
12. Saitô H., Tabeta R., Shoji A., Ozaki T., and Ando I. Macromolecules 16 (1983) 1050
13. Shoji A., Ozaki T., Saitô H., Tabeta R., and Ando I. Macromolecules 17 (1984) 1472
14. Saitô H., Tabeta R., Shoji A., Ozaki T., Ando I., and Miyata T. Biopolymers 23 (1984) 2279
15. Saitô H., Tabeta R., Asakura T., Iwanaga Y., Shoji A., Ozaki T., and Ando I. Macromolecules 17 (1984) 1405
16. Saitô H., Ishida M., Yokoi M., and Asakura T. Macromolecules 23 (1990) 83
17. Ishida M., Asakura T., Yokoi M., and Saitô H. Macromolecules 23 (1990) 88
18. Saitô H., and Yokoi M. J Biochem. (Tokyo) 111 (1992) 376
19. Spera S., and Bax A. J Am. Chem. Soc 113 (1981) 5490
20. Wishart D.S., and Sykes B.D. Methods Enzymoi 239 (1994) 363
21. Tuzi S., Naito A., and Saitô H. Eur. J. Biochem. 218 (1993) 837
22. Tuzi S., Naito A., and Saitô H. Biochemistry 33 (1994) 15046
23. Tuzi S., Yamaguchi S., Naito A., Needleman R., Lanyi J.K., and Saitô H. Biochemistry 35 (1996) 7520
24. Tuzi S., Naito A., and Saitô H. Eur. J. Biochem. 239 (1996) 294
25. Gullion T., and Schaefer J. J Magn. Reson. 81 (1989) 196
26. Raleigh D.P., Levitt M.H., and Griffin R.G. Chem. Phys. Lett. 146 (1988) 71
27. Wishart D.S., Bigam C.G., Holm A., Hodges R.S., and Sykes B.D. J Biomol. NMR 5 (1995) 67
28. Ando I., Saitô H., Tabeta R., Shoji A., and Ozaki T. Macromolecules 17 (1984) 457
29. Asakawa N., Kurosu H., and Ando I. J. Mol. Struct 323 (1994) 279
30. de Dios A.C., Pearson J.G., and Oldfield E. Science 260 (1993) 1491
31. Jiao D., Barfield M., and Hruby V.J. J Am. Chem. Soc 115 (1993) 10883
32. de Dios and A.C., and Oldfield E. J. Am. Chem. Soc 116 (1994) 537
33. Krimm S., and Dwivedi A.M. Science 216 (1982) 407
34. Parrish Jr. J.R., and Blout E.R. Biopolymers 11 (1972) 1001
35. Vogel H., and Gartner W. J Biol. Chem. 262 (1987) 11464
36. Gibson N.J., and Cassim J.Y. Biochemistry 28 (1989) 2134
37. Asakura T., Kuzuhara A., Tabeta R., and Saitô H. Macromolecules 18 (1985) 1841
38. Naito A., Nishimura K., Kimura S., Tuzi S., Aida M., Yasuoka N., and Saitô H. J Phys. Chem. 100 (1996) 14995
39. Aida M., Naito A., and Saitô H. J Mol. Struct. Theochem. 388 (1996) 187
40. Naito A., Nishimura K., Tuzi S., and Saitô H. Chem. Phys. Lett. 229 (1994) 506
41. Kummerlen J., van Beek J.D., Vollrath F., and Meier B.H. Macromolecules 29 (1996) 2920
42. Hijirida D.H., Do K.G., Michal C., Wong S., Zax D., and Jelinski L.W. Biophys. L 71 (1996) 3442
43. Rothwell W.P., and Waugh J.S. J Chem. Phys. 74 (1981) 2721
44. Naito A., Tuzi S., and Saitô H. Eur. J. Biochem. 224 (1994) 729
45. Shoji A., Ando S., Kuroki S., Ando I., and Webb G.A. Annu. Rep. NMR Spectrosc 26 (1993) 55
46. Tuzi S., Shinzawa-Itoh K., Erata T., Naito A., Yoshikawa S., and Saitô H. Eur. J. Biochem. 208 (1992) 713
47. Tsukihara T., Aoyama H., Yamashita E., Tomizaki T., Yamaguchi H., Shinzawa-Itoh K., Nakashima R., Yaono R., and Yoshikawa S. Science 269 (1995) 1069
48. Tsukihara T., Aoyama H., Yamashita E., Tomizaki T., Yamaguchi H., Shinzawa-Itoh K., Nakashima R., Yaono R., and Yoshikawa S. Science 272 (1996) 1136
49. Stoeckenius W., and Bogomolni R.A. Annu. Rev. Biochem. 52 (1982) 587
50. Lanyi J.K. Biochim. Biophys. Acta 1183 (1993) 241
51. Savarese T.M., and Fraser C.M. Biochem. J. 283 (1992) 1
52. Henderson R., Baldwin J.M., Ceska T.A., Zemlin F., Beckmann E., and Downing K.H. J. Mol. Biol. 213 (1990) 899
53. Grigorieff N., Ceska T.A., Downing K.H., Baldwin J.M., and Henderson R.H. J. Mol. Biol. 259 (1996) 393
54. T. Tuzi, A. Naito and H. Saitô, unpublished.
55. Bowers J.L., and Oldfield E. Biochemistry 27 (1988) 5156
56. Keniry M.A., Gutowsky H.S., and Oldfield E. Nature 307 (1984) 383
57. Lewis B.L., Harbison G.S., Herzfeld J., and Griffin R.G. Biochemistry 24 (1985) 4671
58. Herzfeld J., Mulliken C.M., Siminovitch D.J., and Griffin R.G. Biophys. J. 52 (1987) 855
59. Yamaguchi S., Tuzi S., Seki T., Tanio M., Needleman R., Lanyi J.K., Naito A., and Saitô H. J Biochem. (Tokyo) 123 (1998) 79
60. T. Tuzi, K. Yokota, A. Naito and H. Saitô, unpublished.
61. Naito A., Kimura S., Tuzi S., and Saitô H. In: Kitada C. (Ed). Peptide Chemistry 1996 (1997), Protein Research Foundation, Osaka 369
62. Engelhard M., Finkler S., Metz G., and Siebert F. Eur. J. Biochem. 235 (1996) 526
63. Renthal R., Dawson N., Tuley J., and Horowitz P. Biochemistry 22 (1983) 5
64. M. Tanio, S. Tuzi, S. Yamaguchi, H. Konishi, A. Naito, R. Needleman, J. K. Lanyi and H. Saitô, submitted.
65. Metz G., Siebert F., and Engelhard M. FEBS Lett 303 (1992) 237
66. Zheng L., and Herzfeld J. J Bioenerg. Biomembrane 24 (1992) 139
67. Engelhard M., and Bechinger B. Israel J. Chem. 35 (1995) 273
68. Grigorieff N., Beckmann E., and Zemlin F. J Mol Biol 254 (1995) 404
69. Vonck J. Biochemistry 35 (1996) 5870
70. Steinhoff H.-J., Mollaaghababa R., Atenbach C., Hideg K., Krebs M., Khorana H.G., and Hubbell W.L. Science 266 (1994) 105
71. Gullion T., and Schaefer J. Adv. Magn. Reson. 13 (1989) 57
72. Bennett E., Griffin R.G., and Vega S. NMR 33 (1994) 1
73. Levitt M.H., Raleigh D.P., Creuzet F., and Griffin R.G. J. Chem. Phys. 92 (1990) 6347
74. Hing A.W., Vega S., and Schaefer J. J Magn. Reson. 96 (1992) 205
75. Tycko R., and Dabbagh G. Chem. Phys. Lett. 173 (1990) 461
76. Sun B.-Q., Costa P.R., Kocisko D., Lansbury Jr. P.T., and Griffin R.G. J. Chem. Phys. 102 (1995) 702
77. Gullion T., and Vega S. Chem. Phys. Lett 194 (1992) 423
78. Bennett A.E., Ok J.H., Griffin R.G., and Vega S. J. Chem. Phys. 96 (1992) 8624
79. Gullion T., and Schaefer J. J. Magn. Reson. 92 (1991) 439
80. Pan Y., Gullion T., and Schaefer J. J Magn. Reson. 90 (1990) 330
81. Suwelack D., Rothwell W.P., and Waugh J.S. J. Chem. Phys. 73 (1980) 2559
82. Rothwell W.P., and Waugh J.S. J. Chem. Phys. 74 (1981) 2721
83. Naito A., Fukutani A., Uitdehaag M., Tuzi S., and Saitô H. J Mol. Struc (1997) in press.
84. Peersen O.B., Groesbeek M., Aimoto S., and Smith S.O. J. Am. Chem. Soc 117 (1995) 7728
85. Marshall G.R., Beusen D.D., Kociolek K., Redlinski A.S., Leplawy M.T., and Schaefer J. J. Am. Chem. Soc 112 (1990) 963
86. Holl S.M., Marshall G.R., Beusen D.D., Kociolek K., Redlinski A.S., Leplawy M.T., Makey R.A., Vega S., and Schaefer J. J. Am. Chem. Soc 114 (1992) 4830
87. Hing A.W., and Schaefer J. Biochemistry 32 (1993) 7593
88. Hirsh D.J., Hammer J., Maloy W.L., Blazyk J., and Schaefer J. Biochemistry 35 (1996) 12733
89. Garbow J.R., and McWherter C.A. J Am. Chem. Soc 115 (1993) 238
90. Garbow J.R., Breslav M., Antohi O., and Naider F. Biochemistry 33 (1994) 10094
91. Anderson R.C., Gullion T., Joers J.M., Shapiro M., Villhauer E.B., and Weber H.P. J Am. Chem. Soc 117 (1995) 10546
92. Brahmachari S.K., Bhat T.N., Sudhakar V., Vijayan M., Rapaka R.S., Bhatnagar R.S., and Aranthanarayanan V.S. J Am. Chem. Soc 103 (1981) 1703
93. von Siemion I.Z., Wieland T., and Pook K.-H. Angew. Chem. 87 (1975) 712
94. K. Nishimura, A. Naito, C. Hashimoto, S. Tuzi and H. Saitô, manuscript in preparation.
95. Lansbury Jr. P.T., Costa P.R., Griffiths J.M., Simon E.J., Auger M., Halverson K.J., Kocisko D.A., Hendsch Z.S., Ashburn T.T., Spencer R.G.S., Tidor B., and Griffin R.G. Nature, Struct. Biol 2 (1995) 990
96. Griffiths J.M., Ashburn T.T., Auger M., Costa P.R., Griffin R.G., and Lansbury Jr. P.T. J Am. Chem. Soc 117 (1995) 3539
97. Hing A.W., Tjandra N., Cottam P.F., Schaefer J., and Ho C. Biochemistry 33 (1994) 8651
98. Christensen A.M., and Schaefer J. Biochemistry 32 (1993) 2868
99. McDowell L.M., Schmidt A., Cohen E.R., Studelska D.R., and Schaefer J. J. Mol. Biol 256 (1996) 160
100. McDowell L.M., Klug C.A., Beusen D.D., and Schaefer J. Biochemistry 35 (1996) 5395
101. Li Y., Appleyard R.J., Shuttleworth W.A., and Evans J.N.S. J Am. Chem. Soc 116 (1994) 10799
102. Li Y., Krekel F., Ramilo C.A., Amrhein N., and Evans J.N.S. FEBS Lett 377 (1995) 208
103. Thompsom L.K., McDermott A.E., Raap J., Van der Wielen C.M., Lugtenburg J., Herzfeld J., and Griffin R.G. Biochemistry 31 (1992) 7931
104. Lakshmi K.V., Auger M., Raap J., Lugtenburg J., Griffin R.G., and Hetzfeld J. J Am. Chem. Soc 115 (1993) 8515
105. Lakshmi K.V., Farrar M.R., Raap J., Lugtenburg J., Griffin R.G., and Herzfeld J. Biochemistry 33 (1994) 8853